| Previous changeset 9:56713cdcff48 (2022-05-17) Next changeset 11:d4af9796b682 (2022-05-17) |
|
Commit message:
Uploaded |
|
added:
btyper-3.2.0/btyper.xml |
|
removed:
btyper-2.0.3/btyper btyper-2.0.3/btyper.xml btyper-2.0.3/seq_16s_db/b_cereus_group_16s_db.fasta btyper-2.0.3/seq_16s_db/bacillus_cereus_rdp.fa btyper-2.0.3/seq_amr_db/argannot_clus80.fasta btyper-2.0.3/seq_amr_db/megares_grouped.fasta btyper-2.0.3/seq_mlst_db/b_cereus_mlst_db.txt btyper-2.0.3/seq_mlst_db/glp.fas btyper-2.0.3/seq_mlst_db/gmk.fas btyper-2.0.3/seq_mlst_db/ilv.fas btyper-2.0.3/seq_mlst_db/pta.fas btyper-2.0.3/seq_mlst_db/pur.fas btyper-2.0.3/seq_mlst_db/pyc.fas btyper-2.0.3/seq_mlst_db/tpi.fas btyper-2.0.3/seq_panC_db/panC.fasta btyper-2.0.3/seq_rpoB_db/rpobdatabase08122015.fa btyper-2.0.3/seq_virulence_db/bc_virul_nt.fasta btyper-2.0.3/seq_virulence_db/btyper.xml btyper-2.0.3/seq_virulence_db/headers.txt btyper-2.0.3/seq_virulence_db/virul_aa_db.fasta |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/btyper --- a/btyper-2.0.3/btyper Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| b'@@ -1,905 +0,0 @@\n-#!/usr/bin/env python\n-\n-# BTyper version 2.0.3\n-# Created by Laura Carroll\n-# lmc297@cornell.edu\n-\n-# import required packages\n-import argparse, sys, os, re, glob, collections\n-\t\n-\n-# parse arguments\n-parser = argparse.ArgumentParser(usage=\'btyper -i </path/to/input/file.extension> -o </path/to/desired/output_directory/> -t [input data format (seq, pe, se, sra, or sra-get)] [-other options]\')\n-parser.add_argument(\'-i\',\'--input\', nargs=\'+\', help=\'Enter the path to the Bacillus cereus group sequence data you would like to input, or enter an SRA accession number\',required=True)\n-parser.add_argument(\'-o\', \'--output\', nargs=\'+\', help=\'Specify a path to your desired output directory\',required=True)\n-parser.add_argument(\'-t\', \'--type\', nargs=\'+\', help=\'Specify your type of data: seq for genomes or contigs in fasta format, pe for paired-end Illumina reads, se for single-end Illumina reads, sra for a sra file, or sra-get with an SRA accession number\',required=True)\n-parser.add_argument(\'--draft_genome\', action=\'store_true\', default=False, help=\'Optional argument for use with contigs in fasta format; concatenates draft genome contigs into pseudochromosome\')\n-parser.add_argument(\'-v\', \'--virulence\', nargs=\'?\', default=True, help=\'Optional argument, True or False; perform virulence gene typing; default=True\')\n-parser.add_argument(\'-m\', \'--mlst\', nargs=\'?\', default=True, help=\'Optional argument, True or False; perform MLST using Bacillus cereus MLST database; default=True\')\n-parser.add_argument(\'-r\', \'--rpoB\', nargs=\'?\', default=True, help=\'Optional argument, True or False; perform rpoB typing; default=True\')\n-parser.add_argument(\'-p\', \'--panC\', nargs=\'?\', default=True, help=\'Optional argument, True or False; perform panC typing; default=True\')\n-parser.add_argument(\'-s\', nargs=\'?\', default=False, help=\'Optional argument, True or False; BLAST 16s DNA sequence; not recommended for inferring species or pathogenicity; default=False\')\n-parser.add_argument(\'--spades_m\', nargs=\'?\', default=250, help=\'Optional argument for use with Illumina reads; integer; set SPAdes memory limit -m/--memory option in Gb; default is 250 Gb, the default for SPAdes\')\n-parser.add_argument(\'--spades_t\', nargs=\'?\', default=16, help=\'Optional argument for use with Illumina reads; integer; set number of threads to use for SPAdes -t/--threads option; default is 16, the default for SPAdes\')\n-parser.add_argument(\'--spades_k\', nargs=\'?\', default=77, help=\'Optional argument for use with Illumina reads; comma-separated list of integers; set k-mer sizes to use with SPAdes -k option; default is 77\')\n-parser.add_argument(\'-v_db\', \'--virulence_database\', nargs=\'?\', default="aa", help=\'Optional argument for use with -v/--virulence option; specify virulence database to be used: nuc for nucleotide database or aa for amino acid database; default=aa\')\n-parser.add_argument(\'-nuc_p\', \'--nucleotide_p\', nargs=\'?\',default=75, help=\'Optional argument for use with -v/--virulence option and nucleotide database -v_db nuc option; integer between 0 and 100; minimum percent nucleotide identity for virulence gene detection; default=75\')\n-parser.add_argument(\'-nuc_q\',\'--nucleotide_q\', nargs=\'?\',default=90, help=\'Optional argument for use with -v/--virulence option and nucleotide database -v_db nuc option; integer between 0 and 100; minimum percent coverage for virulence gene detection; default=90\')\n-parser.add_argument(\'-aa_p\',\'--amino_acid_p\',nargs=\'?\',default=50, help=\'Optional argument for use with -v/--virulence option and amino acid database -v_db aa option; integer between 0 and 100; minimum percent amino acid identity for virulence gene detection; default=50\')\n-parser.add_argument(\'-aa_q\',\'--amino_acid_q\', nargs=\'?\',default=70, help=\'Optional argument for use with -v/--virulence option and amino acid database -v_db aa option; integer between 0 and 100; minimum percent coverage for virulence gene detection; default=70\')\n-parser.add_argument(\'-e\', \'--evalue\', nargs=\'?\', def'..b't_xml(newseq=dictionaries,argdict=mydb,query_path=query_path,task=task,shorttask=shorttask,evalue_thresh=evalue_thresh,pident_thresh=pident_thresh,qcov_thresh=qcov_thresh)\n-\t\t\tfor f in glob.glob(oarg+"btyper_final_results/*_final_results.txt"):\n-\t\t\t\tbetween_sections(finalfile_string=f)\n-\t\texcept UnboundLocalError:\n-\t\t\tprint "No sequences found for "+shorttask\n-\t\n-\t# if performing mlst:\t\n-\tif marg=="True":\n-\t\tmlst_genes=["glp.fas","gmk.fas","ilv.fas","pta.fas","pur.fas","pyc.fas","tpi.fas"]\n-\t\t# get best-matching AT for each MLST gene\n-\t\tfor mlst in mlst_genes:\n-\t\t\tquery_path=btyper_path+"seq_mlst_db/"+mlst\n-\t\t\tmydb=dbparse(query_path)\n-\t\t\ttask="Predicted MLST Profile:"\n-\t\t\tshorttask="mlst"\n-\t\t\tevalue_thresh=float(earg)\n-\t\t\tpident_thresh=0\n-\t\t\tqcov_thresh=0\n-\t\t\t# run AT for each gene, if sequence deteced\n-\t\t\ttry:\n-\t\t\t\tmake_blast_xml(newseq=dictionaries,argdict=mydb,query_path=query_path,task=task,shorttask=shorttask,evalue_thresh=evalue_thresh,pident_thresh=pident_thresh,qcov_thresh=qcov_thresh)\n-\t\t\texcept UnboundLocalError:\n-\t\t\t\tprint "No sequences found for "+mlst\n-\t\t# loop through isolatefiles\n-\t\tfor root, dirs, files in os.walk(oarg+"btyper_final_results/isolatefiles/"):\n-\t\t\tfor d in dirs:\n-\t\t\t\tdirroot=d.split("_results")[0]\n-\t\t\t\t# open mlst results file, and get ST from ATs\n-\t\t\t\ttry:\t\n-\t\t\t\t\tnewf=open(oarg+"btyper_final_results/isolatefiles/"+d+"/"+dirroot.strip()+"_mlst_results.txt","r")\n-\t\t\t\t\tfinalfile_string=oarg+"btyper_final_results/"+dirroot.strip()+"_final_results.txt"\n-\t\t\t\t\tff=open(finalfile_string,"r")\n-\t\t\t\t\tflines=ff.readlines()\t\n-\t\t\t\t\tif not any("Predicted MLST Profile" in fl.strip() for fl in flines):\n-\t\t\t\t\t\tget_st(mlst_infile=newf,st_file=btyper_path+"seq_mlst_db/b_cereus_mlst_db.txt",finalfile_string=finalfile_string,mlst_genes=mlst_genes)\n-\t\t\t\texcept IOError:\n-\t\t\t\t\tprint "No sequences found for "+shorttask\n-\n-\t# if performing rpoB typing:\n-\tif rarg=="True":\n-\t\t# define database\n-\t\tquery_path=btyper_path+"seq_rpoB_db/rpobdatabase08122015.fa"\n-\t\tmydb=dbparse(query_path)\n-\t\ttask="Predicted rpoB Allelic Type:"\n-\t\tshorttask="rpoB"\n-\t\tevalue_thresh=float(earg)\n-\t\tpident_thresh=0\n-\t\tqcov_thresh=0\n-\t\t# perform rpoB typing, if gene is present\n-\t\ttry:\n-\t\t\tmake_blast_xml(newseq=dictionaries,argdict=mydb,query_path=query_path,task=task,shorttask=shorttask,evalue_thresh=evalue_thresh,pident_thresh=pident_thresh,qcov_thresh=qcov_thresh)\n-\t\t\tfor f in glob.glob(oarg+"btyper_final_results/*_final_results.txt"):\n-\t\t\t\tbetween_sections(finalfile_string=f)\n-\t\texcept UnboundLocalError:\n-\t\t\tprint "No sequences found for "+shorttask\n-\t\n-\t# if performing 16s typing:\n-\tif sarg=="True":\n-\t\t# define database\n-\t\tquery_path=btyper_path+"seq_16s_db/b_cereus_group_16s_db.fasta"\n-\t\tmydb=dbparse(query_path)\n-\t\ttask="Predicted 16s Type"\n-\t\tshorttask="16s"\n-\t\tevalue_thresh=float(earg)\n-\t\tpident_thresh=0\n-\t\tqcov_thresh=0\n-\t\t# perform 16s typing, if gene is present\n-\t\ttry:\n-\t\t\tmake_blast_xml(newseq=dictionaries,argdict=mydb,query_path=query_path,task=task,shorttask=shorttask,evalue_thresh=evalue_thresh,pident_thresh=pident_thresh,qcov_thresh=qcov_thresh)\n-\t\t\tfor f in glob.glob(oarg+"btyper_final_results/*_final_results.txt"):\n-\t\t\t\tbetween_sections(finalfile_string=f)\n-\t\texcept UnboundLocalError:\n-\t\t\tprint "No sequences found for "+shorttask\n-\n-print "Typing complete...how neat is that?"\n-print ""\n-print "Thank you for using BTyper! For more fun, take your output files to BMiner, BTyper\'s companion application for data aggregation and visualization."\n-print ""\n-print "To cite BTyper and/or BMiner, please use the following:"\n-print "Carroll, Laura M., Jasna Kovac, Rachel A. Miller, Martin Wiedmann. 2017. Rapid, high-throughput identification of anthrax-causing and emetic Bacillus cereus group genome assemblies using BTyper, a computational tool for virulence-based classification of Bacillus cereus group isolates using nucleotide sequencing data. Applied and Environmental Microbiology 2017 Jun 16. pii: AEM.01096-17. doi: 10.1128/AEM.01096-17."\n-\n-\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/btyper.xml --- a/btyper-2.0.3/btyper.xml Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| @@ -1,57 +0,0 @@ -<tool id="btyper" name="BTyper" version="2.0.3"> - <requirements> - <requirement type="package" version="2.7">python</requirement> - <requirement type="package">biopython</requirement> - <requirement type="package">blast</requirement> - </requirements> - <command detect_errors="exit_code"><![CDATA[ - - python $__tool_directory__/btyper - -t seq - #if $jobtype.select == "seq" - -i $jobtype.asm - #else if $jobtype.select == "draft" - -i $jobtype.draft --draft_genome - #end if - - -o "./"; cat btyper_final_results/*.txt > results.txt; - - ]]></command> - <inputs> - <conditional name="jobtype"> - <param name="select" type="select" label="Assembly or FASTQ Reads?"> - <option value="draft">Draft Genome</option> - <option value="seq">Complete Genome</option> - </param> - <when value="seq"> - <param name="asm" type="data" format="fasta" label="FASTA" /> - </when> - <when value="draft"> - <param name="draft" type="data" format="fasta" label="FASTA" /> - </when> - </conditional> - - </inputs> - <outputs> - <data format="tabular" label="BTyper Results" name="results" from_work_dir="*.txt"/> - </outputs> - <help><![CDATA[ - BTyper is a that employs a combination of (i) virulence gene-based typing, (ii) multi-locus sequence typing (MLST), (iii) panC clade typing, and (iv) rpoB allelic typing to rapidly classify B. cereus group isolates using nucleotide sequencing data. - - The Draft Genome option concatenates contigs in a single fasta file and produces a single report. The Complete Genome option assumes a single chromosome, and plasmids if present, and the report contains a section for each fasta header in the input file. - - ]]></help> - <citations> - <citation type="bibtex"> - @misc{carrol_kovac_miller_wiedman_2017, - title={Rapid, high-throughput identification of anthrax-causing and emetic Bacillus cereus group genome assemblies using BTyper, a computational tool for virulence-based classification of Bacillus cereus group isolates using nucleotide sequencing data.}, - url={http://aem.asm.org/content/early/2017/06/12/AEM.01096-17}, - journal={Applied and Environmental Microbiology}, publisher={ASM}, - author={Carroll, Laura M., Jasna Kovac, Rachel A. Miller, Martin Wiedmann}, - year={2017}, month={Jun}} , - }</citation> - </citations> - - - -</tool> |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_16s_db/b_cereus_group_16s_db.fasta --- a/btyper-2.0.3/seq_16s_db/b_cereus_group_16s_db.fasta Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,18 +0,0 @@\n->16s_CP006863_1_Bacillus_toyonensis_BCT_7112\n-TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATGGATTGAGAGCTTGCTCTCAAGAAGTTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACTGCATGGTTCGAAATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGACTTTCTGGTCTGTAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGAAGTTAACGCATTAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGAAAACCCTAGAGATAGGGCTTCTCCTTCGGGAGCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGGTGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCTTTTTGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTT\n->16s_NC_004722_1_Bacillus_cereus_ATCC_14579\n-TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATGGATTAAGAGCTTGCTCTTATGAAGTTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTTCGAAATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGACTTTCTGGTCTGTAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGAAGTTAACGCATTAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGAAAACCCTAGAGATAGGGCTTCTCCTTCGGGAGCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGGTGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCTTTTTGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTT\n->16s_NZ_CM000742_1_Bacillus_mycoides_DSM_2048\n-TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATGGATTAAGAGCTTGCTCTTATGAAGTTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTACCCATAAGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATAATATTTTGAACTGCATAGTTCGAAATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGC'..b'GACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGAAGTTAACGCATTAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGAAAACCCTAGAGATAGGGCTTCTCCTTCGGGAGCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGGTGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCTTTTTGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTT\n->16s_FSL_W8_0169_N711_S502_Bacillus_wiedmannii\n-TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATGGATTAAGAGCTTGCTCTTATGAAGTTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACTGCATGGTTCGAAATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGACTTTCTGGTCTGTAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGAAGTTAACGCATTAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGAAAACCCTAGAGATAGGGCTTCTCCTTCGGGAGCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGGTGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCTTTATGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTT\n->16s_NZ_CP007666_1_Bacillus_anthracis_str_Vollum\n-TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATGGATTAAGAGCTTGCTCTTATGAAGTTAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTCCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTTCGAAATTGAAAGGCGGCTTCGGCTGTCACTTATGGATGGACCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGACTTTCTGGTCTGTAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGAAGTTAACGCATTAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGACAACCCTAGAGATAGGGCTTCTCCTTCGGGAGCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCATCATTTAGTTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGGTGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCTTTTTGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTT\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_16s_db/bacillus_cereus_rdp.fa --- a/btyper-2.0.3/seq_16s_db/bacillus_cereus_rdp.fa Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,21 +0,0 @@ ->S002287574 Bacillus cereus (T); ATCC 14579; AE016877 -TTATTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGaatggattaaga -gcttgctcttatgaagttAGCGGCGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACTCCGGGAA -ACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTTCGAAATtGAAAGGcggcttcggctgTCACTTATGGATGGA -CCCGCGTCGCATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCC -ACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGG -AGCAACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAGGGAAGAacaagtgctagttgaataagc -tggcacctTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGT -TATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGG -GTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGG -AGGAACACCAGTGGCGAAGGCGACTTTCTGGTCTGTAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAG -ATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGggtttccgccCTTTAGTGCTGAAGTTAACGCAT -TAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT -GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGAAAACCCTAGAGATAGGGCTtctcctt -cgggagCAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCA -ACCCTTGATCTTAGTTGCCATCAttaagtTGGGCACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGA -CGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGACGGTACAAAGAGCTGCAAGACCGCGAGG -TGGAGCTAATCTCATAAAACCGTTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGCTAGTAAT -CGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCC -GAAGTCGGTggggtaacctttttggagccaGCCGCCTAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAAGGTAGCC -GTATCGGAAGGTGCGGCTGGATCACCTCCTTT |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_amr_db/argannot_clus80.fasta --- a/btyper-2.0.3/seq_amr_db/argannot_clus80.fasta Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b"@@ -1,3616 +0,0 @@\n->438amr___(AGly)Aac|AJ628983|1985-2539|555\n-ATGCCCTCCCACGATCATCCTGTCACCTTGCGGCTTATGACGGAGCAAGACCTGCCTATGCTCCATGAATGGCTGAATCGGCCGCACATAGTCGAGTGGTGGGGCGGTGAAGAGCAACGTCCGACACTGGCGGATGTACTGGAACACTACAGGCCCAGAATCTTGGCGCACGAGTCGGTCACTCCATACATCGCCATGCTGGGCGAAGAACCAATCGGATATGCGCAGTCGTACGTCGCGCTCGGAAGCGGCGATGGATGGTGGGAAGAGGAAACCGACCCAGGAGTACGAGGAATCGATCAGTCGTTGGCGAATCCTACGCAGTTGAACATGGGCCTGGGAACAGAGCTTGTGCGAGCGCTGGTTGATCGGTTGTTCTCCGACCCAACGGTGACAAAGATCCAGACTGATCCGGCCCCAAACAATCGCCGCGCGATCCGCTGCTACGAGAAGGCGGGCTTTGTGCAGGAGAGAGTCATCACGACACCCGACGGGCAGGCCGTCTACATGACCCAATCTAGGCAAGCCTACGAGCGTGCGCGCGGTGCTGCCTAA\n->450amr___(AGly)Aac2-Ia|L06156|264-800|537\n-ATGGGCATAGAATACCGCAGTCTGCATACCAGCCAATTGACACTGAGTGAAAAAGAAGCGCTTTACGATTTATTAATTGAAGGTTTTGAAGGCGATTTTTCGCATGACGATTTCGCGCACACTTTAGGTGGAATGCACGTCATGGCTTTTGATCAACAAAAATTGGTTGGTCATGTTGCAATTATTCAACGCCATATGGCCCTAGATAATACGCCTATCTCTGTAGGGTATGTTGAAGCGATGGTAGTTGAACAAAGTTATCGTCGCCAAGGTATTGGGCGGCAATTGATGCTGCAAACCAATAAAATTATAGCTTCGTGTTATCAATTAGGGCTGCTGTCGGCTTCAGATGATGGACAAAAATTGTATCATTCGGTTGGATGGCAAATCTGGAAAGGTAAGTTGTTTGAATTGAAACAAGGGAGCTATATCCGTTCTATTGAAGAAGAAGGCGGAGTCATGGGCTGGAAAGCGGATGGTGAGGTTGATTTTACCGCTTCGCTTTACTGTGATTTTCGTGGCGGTGATCAGTGGTAA\n->426amr___(AGly)Aac2-Ib|U41471|266-822|588\n-GTGCCTTTCCAGGATGTCAGCGCGCCCGTTCGAGGCGGGATCCTGCACACCGCTCGACTCGTCCACACCTCCGATCTCGATCAGGAGACTCGAGAGGGCGCCCGCCGCATGGTCATCGAGGCGTTCGAGGGTGATTTCAGCGACGCCGACTGGGAGCACGCGCTCGGTGGCATGCACGCCTTCATCTGTCACCACGGCGCTCTGATCGCGCATGCCGCGGTGGTCCAGCGCCGGCTGCTCTACCGCGACACCGCGCTGCGCTGCGGGTACGTGGAAGCCGTGGCGGTGCGCGAAGATTGGCGCGGCCAAGGCCTGGCCACCGCCGTCATGGACGCGGTCGAACAGGTGCTGCGCGGCGCCTACCAGCTCGGCGCCCTCAGTGCGTCCGACACAGCCAGAGGCATGTACCTCTCTCGCGGGTGGCTGCCGTGGCAGGGGCCGACCTCGGTGCTGCAGCCGGCCGGCGTGACGCGTACACCCGAGGACGACGAGGGACTGTTCGTGCTGCCCGTCGGTCTCCCGGCGGGAATGGAACTCGACACCACAGCCGAGATCACCTGCGACTGGCGCGACGGGGACGTCTGGTAA\n->446amr___(AGly)Aac2-Ic|U72714|373-918|546\n-GTGCACACCCAGGTACACACGGCCCGCCTGGTCCACACCGCCGATCTTGACAGCGAGACCCGCCAGGACATCCGTCAGATGGTCACCGGCGCGTTTGCCGGTGACTTCACCGAGACCGACTGGGAGCACACGCTGGGTGGGATGCACGCCCTGATCTGGCATCACGGGGCGATCATCGCGCATGCCGCGGTGATCCAGCGGCGACTGATCTACCGCGGCAACGCGCTGCGCTGCGGGTACGTCGAAGGCGTTGCGGTGCGGGCGGACTGGCGGGGCCAACGCCTGGTGAGCGCGCTGTTGGACGCCGTCGAGCAGGTGATGCGCGGCGCTTACCAGCTCGGAGCGCTCAGTTCCTCGGCGCGGGCCCGCAGACTGTACGCCTCACGCGGCTGGCTGCCCTGGCACGGCCCGACATCGGTACTGGCACCAACCGGTCCAGTCCGTACACCCGATGACGACGGAACGGTGTTCGTCCTGCCCATCGACATCAGCCTGGACACCTCGGCGGAGCTGATGTGCGATTGGCGCGCGGGCGACGTCTGGTAA\n->411amr___(AGly)Aac(2')-Id|U72743|386-1018|533\n-GTGCTCACCCAGCATGTCAGTGAGGCTCGCACGCGCGGTGCGATCCACACCGCGCGTCTGATCCACACCTCCGATCTGGACCAGGAAACCCGCGACGGCGCGCGCCGCATGGTGATCGAGGCGTTCCGCGATCCGTCCGGAGACAGTGATTTCACCGACGATTTCACCGACGACGACTGGGACCACGCGCTCGGCGGCATGCACGCGCTGATCTCTCACCACGGTGCGCTCATCGCGCACGGCGCCGTCGTCCAACGTCGGTTGATGTACCGGGGACCCGACGGTAGAGGTCACGCGCTGCGCTGCGGTTACGTCGAGGCCGTCGCGGTGCGCGAGGACCGGCGGGGCGACGGTCTGGGCACCGCCGTGCTCGACGCGCTCGAGCAGGTGATCCGCGGCGCCTATCAGATCGGCGCGCTGAGCGCGTCGGACATCGCCCGGCCGATGTACATTGCCAGGGGCTGGCTGTCGTGGGAGGGTCCGACATCGGTGCTGACCCCCACCGAGGGCATCGTTCGCACCCCTGAGGACGACCGGTCGCTGTTCGTCCTGCCGGTCGATCTCCCGGACGGCCTCGAGTTGGACACCGCGCGCGAGATCACGTGCGACTGGCGCTCCGGCGACCCCTGGTGA\n->443amr___(AGly)Aac2-Ie|NC_011896|3039059-3039607|549\n-ATGGATACCCACCACGTACATACCGCCCGCCTGGTTCATACCGCCGATCTCGACGGCGAGACTCTCCGGCGCCTCCAGCAGATGGTCACCGACGCTTTCGCCGGAGACTTCGACGAGACCGACTGGGAACACGCATTGGGCGGGATGCACGCCCTGATCTGGCGGCACGGCACAATCATTGCGCACGCCGCGGTCGTTCAGCGGCGACTATTCTACCACGGCAACGCGTTGCGTTGCGGTTACCTCGAAGGTGTCGCGGTACGGAAGGACTGCCGGGGCCGCGGACTTGTACATGCGCTGCTGGACGCTATCGAGCAAGTGATACGCGGCGCCTATCAATTCGGTGCCTTGAGTTCCTCGGACCGAGCCCGTCGGGTGTATATGTCGCGCGGGTGGTTACCATGGCTCGGCCCGACGTCAGTGCTGGCTCCTACCGGTGTGATCCGTACGCCCGATGATGACGGCTCGGTGTTTGTCCTTCCGGTCGGCATCAACCCGGACACCTCCTCGGGGTTGATGTGCGATTGGCGCGCAGGCAACGTGTGGTAA\n->452amr___(AGly)Aac3-I|AJ877225|5293-5757|465\n-ATGGGCATCATTCGCACATGTAGGCTCGGTCCGGACCAAGTGCAATCCATGCGGGCTGCTCTTGATCTCTTCGGTCGTGAGTTCGGAGACGTAGCCAGCTACTCCCAACATCAGCCGGACTCCGATTACCTCGCGAAATTGCTCCACAGCAGGACATTCATCGCGCTTGCCGCGTTCGACCAAGAATCGGTTGTTGGCGCTCTTGCCGCCTACGTTTTGCCAAAGTTTGAGCA"..b'TTCCAGAAGTGAATTATGAGGAATGGAATGAGGTATTTGCCCAAAAAGGGATAAAGAATGATAAAAATCCGTATAACTACTATTTTCATGTATATGAAAGAAAAAACTTATTGAGTTAA\n->459amr___(Tmt)DfrK|FM207105|2788-3279|492\n-ATGAAAGTTTCTTTAATTGCTGCGATGGATAAGAACAGGGTAATAGGTAAAGAGAATGACATACCTTGGAGAATCCCAGAGGATTGGGAGTATGTTAAAAATACTACAAAGGGATATCCAATTATATTAGGAAGGAAGAATCTTGAATCAATCGGAAGAGCATTACCTGGAAGAAGGAATATTATTCTGACAAGAGATAAGGGGTTCAGCTTTAATGGTTGTGAAATCGTCCATTCAATAGAAGATGTTTTTGAGTTATGTAATAGCGAAGAGGAAATTTTCATTTTCGGGGGAGAACAAATTTATAATTTGTTTCTACCATATGTTGAGAAAATGTACATTACAAAAATTCATTACGAATTTGAAGGAGATACATTCTTTCCAGAAGTGAATTATGAAGAGTGGAACGAAGTATCTGTTACACAAGGAATAACAAATGAAAAAAATCCTTATACATATTATTTTCATATTTATGAGCGAAAAGCTTCTTGA\n->30amr___(Col)MCR-1|KP347127|22413-24038|1626\n-ATGATGCAGCATACTTCTGTGTGGTACCGACGCTCGGTCAGTCCGTTTGTTCTTGTGGCGAGTGTTGCCGTTTTCTTGACCGCGACCGCCAATCTTACCTTTTTTGATAAAATCAGCCAAACCTATCCCATCGCGGACAATCTCGGCTTTGTGCTGACGATCGCTGTCGTGCTCTTTGGCGCGATGCTACTGATCACCACGCTGTTATCATCGTATCGCTATGTGCTAAAGCCTGTGTTGATTTTGCTATTAATCATGGGCGCGGTGACCAGTTATTTTACTGACACTTATGGCACGGTCTATGATACGACCATGCTCCAAAATGCCCTACAGACCGACCAAGCCGAGACCAAGGATCTATTAAACGCAGCGTTTATCATGCGTATCATTGGTTTGGGTGTGCTACCAAGTTTGCTTGTGGCTTTTGTTAAGGTGGATTATCCGACTTGGGGCAAGGGTTTGATGCGCCGATTGGGCTTGATCGTGGCAAGTCTTGCGCTGATTTTACTGCCTGTGGTGGCGTTCAGCAGTCATTATGCCAGTTTCTTTCGCGTGCATAAGCCGCTGCGTAGCTATGTCAATCCGATCATGCCAATCTACTCGGTGGGTAAGCTTGCCAGTATTGAGTATAAAAAAGCCAGTGCGCCAAAAGATACCATTTATCACGCCAAAGACGCGGTACAAGCAACCAAGCCTGATATGCGTAAGCCACGCCTAGTGGTGTTCGTCGTCGGTGAGACGGCACGCGCCGATCATGTCAGCTTCAATGGCTATGAGCGCGATACTTTCCCACAGCTTGCCAAGATCGATGGCGTGACCAATTTTAGCAATGTCACATCGTGCGGCACATCGACGGCGTATTCTGTGCCGTGTATGTTCAGCTATCTGGGCGCGGATGAGTATGATGTCGATACCGCCAAATACCAAGAAAATGTGCTGGATACGCTGGATCGCTTGGGCGTAAGTATCTTGTGGCGTGATAATAATTCGGACTCAAAAGGCGTGATGGATAAGCTGCCAAAAGCGCAATTTGCCGATTATAAATCCGCGACCAACAACGCCATCTGCAACACCAATCCTTATAACGAATGCCGCGATGTCGGTATGCTCGTTGGCTTAGATGACTTTGTCGCTGCCAATAACGGCAAAGATATGCTGATCATGCTGCACCAAATGGGCAATCACGGGCCTGCGTATTTTAAGCGATATGATGAAAAGTTTGCCAAATTCACGCCAGTGTGTGAAGGTAATGAGCTTGCCAAGTGCGAACATCAGTCCTTGATCAATGCTTATGACAATGCCTTGCTTGCCACCGATGATTTCATCGCTCAAAGTATCCAGTGGCTGCAGACGCACAGCAATGCCTATGATGTCTCAATGCTGTATGTCAGCGATCATGGCGAAAGTCTGGGTGAGAACGGTGTCTATCTACATGGTATGCCAAATGCCTTTGCACCAAAAGAACAGCGCAGTGTGCCTGCATTTTTCTGGACGGATAAGCAAACTGGCATCACGCCAATGGCAACCGATACCGTCCTGACCCATGACGCGATCACGCCGACATTATTAAAGCTGTTTGATGTCACCGCGGACAAAGTCAAAGACCGCACCGCATTCATCCGCTGA\n->32amr___(Col)MCR-2|LT598652|26779-28395|1617\n-ATGACATCACATCACTCTTGGTATCGCTATTCTATCAATCCTTTTGTGCTGATGGGTTTGGTGGCGTTATTTTTGGCAGCGACAGCGAACCTGACATTTTTTGAAAAAGCGATGGCGGTCTATCCTGTATCGGATAACTTAGGCTTTATCATCTCAATGGCGGTGGCGGTGATGGGTGCTATGCTACTGATTGTCGTGCTGTTATCCTATCGCTATGTGCTAAAGCCTGTCCTGATTTTGCTACTGATTATGGGTGCGGTGACGAGCTATTTTACCGATACTTATGGCACGGTCTATGACACCACCATGCTCCAAAATGCCATGCAAACCGACCAAGCCGAGTCTAAGGACTTGATGAATTTGGCGTTTTTTGTGCGAATTATCGGGCTTGGCGTGTTGCCAAGTGTGTTGGTCGCAGTTGCCAAAGTCAATTATCCAACATGGGGCAAAGGTCTGATTCAGCGTGCGATGACATGGGGTGTCAGCCTTGTGCTGTTGCTTGTGCCGATTGGACTATTTAGCAGTCAGTATGCGAGTTTCTTTCGGGTGCATAAGCCAGTGCGTTTTTATATCAACCCGATTACGCCGATTTATTCGGTGGGTAAGCTTGCCAGTATCGAGTACAAAAAAGCCACTGCGCCAACAGACACCATCTATCATGCCAAAGACGCCGTGCAGACCACCAAGCCGAGCGAGCGTAAGCCACGCCTAGTGGTGTTCGTCGTCGGTGAGACGGCGCGTGCTGACCATGTGCAGTTCAATGGCTATGGCCGTGAGACTTTCCCGCAGCTTGCCAAAGTTGATGGCTTGGCGAATTTTAGCCAAGTGACATCGTGTGGCACATCGACGGCGTATTCTGTGCCGTGTATGTTCAGCTATTTGGGTCAAGATGACTATGATGTCGATACCGCCAAATACCAAGAAAATGTGCTAGATACGCTTGACCGCTTGGGTGTGGGTATCTTGTGGCGTGATAATAATTCAGACTCAAAAGGCGTGATGGATAAGCTACCTGCCACGCAGTATTTTGATTATAAATCAGCAACCAACAATACCATCTGTAACACCAATCCCTATAACGAATGCCGTGATGTCGGTATGCTTGTCGGGCTAGATGACTATGTCAGCGCCAATAATGGCAAAGATATGCTCATCATGCTACACCAAATGGGCAATCATGGGCCGGCGTACTTTAAGCGTTATGATGAGCAATTTGCCAAATTCACCCCCGTGTGCGAAGGCAACGAGCTTGCCAAATGCGAACACCAATCACTCATCAATGCCTATGACAATGCGCTACTTGCGACTGATGATTTTATCGCCAAAAGCATCGATTGGCTAAAAACGCATGAAGCGAACTACGATGTCGCCATGCTCTATGTCAGTGACCACGGCGAGAGCTTGGGCGAAAATGGTGTCTATCTGCATGGTATGCCAAATGCCTTTGCACCAAAAGAACAGCGAGCTGTGCCTGCGTTTTTTTGGTCAAATAATACGACATTCAAGCCAACTGCCAGCGATACTGTGCTGACGCATGATGCGATTACGCCAACACTGCTTAAGCTGTTTGATGTCACAGCGGGCAAGGTCAAAGACCGCGCGGCATTTATCCAGTAA\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_amr_db/megares_grouped.fasta --- a/btyper-2.0.3/seq_amr_db/megares_grouped.fasta Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,6854 +0,0 @@\n->1amr___(betalactams)BLAZ|CARD|phgb|NC_010066|9682-10528|ARO:3000621|PC1|betalactams|Class_A_betalactamases|BLAZ\n-TTAAAATTCCTTCATTACACTCTTGGCGGTTTCACTTATCAACTTATCATTTGGCTTATCACTTTTATTGTCTTTATTCGTAAAAATGACTAAAACAATAGGTTCAGATTGGCCCTTAGGATAAACAAAAGCAACATCATTTCTAGAAGCATATGTTATTGCTTGACCACTTTTATCAGCAACTTTATAGTCTTTTGGAATACCATCTTTAATTAAAGTGTCTCCGTTTTTATTATTTAACATTAAATCAAGTAAGAAATTTTTATTTTTTTTGCTTAATTTTCCATTTGCGATAAGTTTATTTAAAGTCTTGCCGAAAGCAGCAGGCGTTGAAGTATCTTTTTTGCTCTTTGGTGAATAGTAATTTAATTCTATTTCATATCTAACTGGATTTGTTACTTTATCTCCCAATTTTTTTAAACGTTTTTTAATTTTTTTGATTCCACCGATTTCGTTTATAATTTTATTGTTTGCTGTATTATCACTGTACTTCATTGAAGCCTCAATAAGTTCTTTTAAAGCGATATCTTTTCCTACATATTTTTCTAAAATAGGAGAATAAGCAACTATATCATCTTTGTTAATATGTACTTTTTTATTTAACTTATTATAAGGTACTTGTTCTAACAAAATAGCACTATTTATCGCTTTTGAAGTCGAAGCATAGGCAAATCTCTTATCTGAATTAAATTTTACTTCCTTACCACTTTTAGTATCTAAAGCATAAACACCAATATGAGCATTATATTTTTTTTCTAAATCATTTAACTCTTTGGCATGTGAACTGTTTGAATTACATGCACTTAAAACTAAAGCAATTACAATTAAAAATATTAACTTTTTCAAA\n->1amr___(betalactams)BLAZ|Bla|BlaZ|AB245469|2235-3080|861|betalactams|Class_A_betalactamases|BLAZ\n-TTGAAAAAGTTAATATTTTTAATTGTAATTGCTTTAGTTTTAAGTGCATGTAATTCAAACAGTTCACATGCCAAAGAGTTAAATGATTTAGAAAAAAAATATAATGCTCATATTGGTGTTTATGCTTTAGATACTAAAAGTGGTAAGGAAGTAAAATTTAATTCAGATAAGAGATTTGCCTATGCTTCAACTTCAAAAGCGATAAATAGTGCTATTTTGTTAGAACAAGTACCTTATAATAAGTTAAATAAAAAAGTACATATTAACAAAGATGATATAGTTGCTTATTCTCCTATTTTAGAAAAATATGTAGGAAAAGATATCACTTTAAAAGCACTTATTGAGGCTTCAATGACATATAGTGATAATACAGCAAACAATAAAATTATAAAAGAAATCGGTGGAATCAAAAAAGTTAAACAACGTCTAAAAGAACTAGGAGATAAAGTAACAAATCCAGTTAGATATGAGATAGAATTAAATTACTATTCACCAAAGAGCAAAAAAGATACTTCAACACCTGCTGCTTTCGGTAAGACTTTAAATAAACTTATCGCAAATGGAAAATTAAGCAAAGAAAACAAAAAATTCTTACTTGATTTAATGTTAAATAATAAAAGCGGAGATACTTTAATTAAAGACGGTGTTCCAAAAGACTATAAGGTTGCTGATAAAAGTGGTCAAGCAATAACATATGCTTCTAGAAATGATGTTGCTTTTGTTTATCCTAAGGGCCAATCTGAACCTATTGTTTTAGTCATTTTTACGAATAAAGACAATAAAAGTGATAAGCCAAATGATAAGTTGATAAGTGAAACCGCCAAGAGTGTAATGAAGGAATTTTAA\n->1amr___(betalactams)BLAZ|Bla|Z_32_AP004832|betalactams|Class_A_betalactamases|BLAZ\n-TTGAAAAAGTTAATATTTTTAATTGTAATGGCTTTAGTTTTAAGTGCATGTAATTCAAACAGTTCACATGCCAAAGAGTTAAATGATTTAGAAAAAAAATATAATGCTCATATTGGTGTTTATGCTTTAGATACTAAAAGTGGTAAGGAAGTAAAATTTAATTCAGATAAGAGATTTGCCTATGCTTCGACTTCAAAAGCGATAAATAGTGCTATTTTGTTAGAACAAGTACCTTATAATAAGTTAAATAAAAAAGTACATATTAACAAAGATGATATAGTTGCTTATTCTCCTATTTTAGAAAAATATGTAGGAAAAGACATCACTTTAAAAGAACTTATTGAGGCTTCAATGACATATAGTGATAATACAGCAAACAATAAAATTATAAAAGAAATCGGTGGAATCAAAAAAGTTAAACAACGTCTAAAAGAACTAGGAGATAAAGTAACAAATCCAGTTAGATATGAGATAGAATTAAATTACTATTCGCCAAAGAGCAAAAAAGATACTTCAACGCCTGCTGCTTTCGGCAAGACTTTAAATAAACTTATCGCAAATGGAAAATTAAGCAAAAAAAATAAAAATTTCTTACTTGATTTAATGTTTAATAATAAAAACGGAGACACTTTAATTAAAGATGGTGTTCCAAAAGACTATAAGGTTGCTGATAAAAGTGGTCAAGCAATAACATATGCTTCTAGAAATGATGTTGCTTTTGTTTATCCTAAGGGCCAATCTGAACCTATTGTTTTAGTCATTTTTACGAATAAAGACAATAAAAGTGATAAGCCAAATGATAAGTTGATAAGTGAAACCGCCAAGAGTGTAATGAAGGAATTTTAA\n->1amr___(betalactams)BLAZ|Bla|FR823292.1|gene2|betalactams|Class_A_betalactamases|BLAZ\n-TTGAAAAAATTAATAATTTTAGTCGTGTTAGCGTTGATATTAAGTGCTTGTAATAGTAAGAATTCAACTAATAACGACATTGAAAAGATCGAAAAAAAATATGGTGCTAACGTAGGTATGTATGCTCTTAATACTCAAAATGGTAAAGAATTATCATTTAATGAAAATAAGCGTTTTGCATATGCTTCCACATTAAAAACTATAAGTAGCGCAATGCTGCTTGAACAAACACCTTACAACAAATTAGATAAAAAAATTCACATTAATAAAGATGATATTGTTCCATATTCACCAGTGTTAGAAAAATATATTGGCAAAGAGATAACTTTAAAAAAGCTTATAGAAGCTACCATGTTATTTAGCGATAACACGGCTAATAATAAAATTATCGATGAATTGGGAGGATATGGGCAAGTAAAAACGAAACTGATAGATTTAGGCGATACAACGACACATCCATCTAGAAAAGAACCAGACTTAAATTTTTATTCACCAAAGGATAAACGAGATACAAGTACTCCATTAGCCTATGGTAAAACTTTAAAGAAACTTATAGCTGATGGAGATCTTAGCAAAGCAAACAAAGATTTCTTACTTAATCTAATGTTCAAAAATAAAAGTGGCGATACATTAATTAAGGATGGTGCACCTTCAAACTTTAAAGTTATGGATAAGAGCGGTCAAGCACTAACATACGGTTCAAGAAACGATGTTGCGTTTGTTTATCCAGATGGACAAGATAAACCTATAATTCTGGTGATATTTACAAATAAAGATAGAAAAGATGGTAAACCTAATGACAAAATAGTAAGTGAGGTTGCTGAAATTGTACTAAAAAATATTAATGAGTAA\n->1amr___(betalactams)BLAZ|Bla|blaZ_40_DQ269019|betalactams|Class_A_betalactamases|BLAZ\n-TTGAAAAAGTTAATATTTTTAATTGCAATTGCTTTAGTTTTAAGTGCATGTAATTCAARCAGTTCACATGCCAAAGAGTTAAATGATTTAGAAAAAAAATATAATG'..b'TCGCCATCCAAGTT\n->508amr___(Phenicol)CATP|Phe|catP_1_U15027|Phenicol|Chloramphenicol_acetyltransferases|CATP\n-ATGGTATTTGAAAAAATTGATAAAAATAGTTGGAACAGAAAAGAGTATTTTGACCACTACTTTGCAAGTGTACCTTGTACATACAGCATGACCGTTAAAGTGGATATCACACAAATAAAGGAAAAGGGAATGAAACTATATCCTGCAATGCTTTATTATATTGCAATGATTGTAAACCGCCATTCAGAGTTTAGGACGGCAATCAATCAAGATGGTGAATTGGGGATATATGATGAGATGATACCAAGCTATACAATATTTCACAATGATACTGAAACATTTTCCAGCCTTTGGACTGAGTGTAAGTCTGACTTTAAATCATTTTTAGCAGATTATGAAAGTGATACGCAACGGTATGGAAACAATCATAGAATGGAAGGAAAGCCAAATGCTCCGGAAAACATTTTTAATGTATCTATGATACCGTGGTCAACCTTCGATGGCTTTAATCTGAATTTGCAGAAAGGATATGATTATTTGATTCCTATTTTTACTATGGGGAAATATTATAAAGAAGATAACAAAATTATACTTCCTTTGGCAATTCAAGTTCATCACGCAGTATGTGACGGATTTCACATTTGCCGTTTTGTAAACGAATTGCAGGAATTGATAAATAGTTAA\n->508amr___(Phenicol)CATP|Phe|CatD|X15110|91-729|639|Phenicol|Chloramphenicol_acetyltransferases|CATP\n-ATGGTATTTGAAAAAATTGATAAAAATAGTTGGAACAGAAAAGAGTATTTTGACCACTACTTTGCAAGTGTACCTTGTACATACAGCATGACCGTTAAAGTGGATATCACACAAATAAAGGAAAAGGGAATGAAACTATATCCTGCAATGCTTTATTATATTGCAATGATTGTAAACCGCCATTCAGAGTTTAGGACGGCAATCAATCAAGATGGTGAATTGGGGATATATGATGAGATGATACCAAGCTATACAATATTTCACAATGATACTGAAACATTTTCCAGCCTTTGGACTGAGTGTAAGTCTGACTTTAAATCATTTTTAGCAGATTATGAAAGTGATACGCAACGGTATGGAAACAATCATAGAATGGAAGGAAAGCCAAATGCTCCGGAAAACATTTTTAATGTATCTATGATACCGTGGTCAACCTTCGATGGCTTTAATCTGAATTTGCAGAAAGGATATGATTATTTGATTCCTATTTTTACTATGGGGAAAATTATAAAGAAGGATAACAAAATTATACTTCCTTTGGCAATTCAAGTTCATCACGCAGTATGTGACGGATTTCACATTTGCCGTTTTGTAAACGAATTGCAGGAATTGATAATAGTTACTCAGGTTTGTCTGTAA\n->509amr___(Tetracyclines)TCR3|CARD|phgb|D38215|0-1539|ARO:3002893|tcr3|Tetracyclines|Tetracycline_resistance_major_facilitator_superfamily_MFS_efflux_pumps|TCR3\n-ATGGGAATGGCGAACGCCACCTCGCAGACCGGCGAGGCCGTCGCGGACGAGGCCGGCGGCCCCGCCGGCTTCACTCACCGCCAGATCATCACCGCGCTGTCCGGGCTCCTGTTGGCCGTGCTGCTCGCCGCACTCGACCAGACGATCGTCTCCACCGCGCTGCGTACGATCGGCGACCAACTGCACGGCCAGACCGTCCAGGCCTGGGTGATCACCGGCTACCTGGTCAGCTCCACGATCGCGATGCCGTTCTACGGCAAGCTGTCCGACATCTACGGCCGCAAGCCGCTCTATCTGGCGGCGATCGCGGTCTTCATCGTCGGCTCGGCGGCCTGCGCGATGGCGAACTCGATGGAGACGCTGGCGATCGCCCGCGTCCTCCAGGGCTTCGGCGGCGCCGGGCTGATGTCGCTGCCGACGGCCGTCATCGCCGACCTCGCCCCGGTGCGCGAGCGCGGGCGCTACTTCTCGTACCTGATGATGGCCTGGGTGGCGGCCAGTGTGCTCGGCCCGCTCGTCGGGGGCCTGTTCGCGGGCGCCGGCGAGATCCTCGGGGTGACCGGCTGGCGCTGGGCCTTCCTGATCAACGTGCCGCTCGGTCTCGTGGCGCTGCTCAGCGTGCGCAAGGCGCTCAACCTGCCGCACCGCAGGGTGGACCACCCGATCGACTTCCGGGGGGCGCTCACCCTGGCGCTCTGCCTGGTGCCGCTGCTGATCGTGGCGGAGGAGGGCCTCGACTGGGGCTGGGGATCGGCGCGTTCGCTGACGCTGTTCGCCGTCTCGCTGATCGGCCTGGTGCTGTTCGTGCTCGCCGAGCGGGCCCGCGGGCTGGAGGCGATGGTCCCGCTGCGGCTGTTCCGGCGCGGTGGCATCACGATGGCCACGGCCGTCAACTTCACCATCGGCGTCGGCATCTTCGGTACGGTCTCCACCCTGCCGCTGTTCCTGCAGCTGGTGCAGGGGCGCAGTGCCACCGTCGCCGGACTGGTGATCATCCCGGTGATGACCGGGGCGATCGTCTCCCAGACGATCTGCGCCAAGATCATCAAGAAGTGGAACCGCTACAAGAAGCCCGCGATCGTGGGCCTCGGCTCGATGGCCGGAGCACTGCTGTCGCTCTCCGCCGCGGGCGCGGACACCCCGCTCGCGGTGATCGTGGTGATCGCGGCCTGGCTGGGCTTCGGCATCGGGCTCTCCCAGACCGTCATCACCCTGGCGATCCAGAGCTCGGCGCCCAAGTCCGAGCTGGGCGTGGCCAACGCCGCCTCCGGGCTGTTCCGCCAGCTCGGCGGCACGAGCGGCGCCGCCGTCTTCATGTCGGTGCTGTTCGGCGTCGCCGCCGGCAGGCTCGACGGGGCCGACCCGGACGAGGCCGTGCGCCGTGCGCTCTCCGACCCGGGCTCCACCGGCGGCCTGAGCGCCTCGGCGGTCGACGCCTTCACCTCGGGCTTCGACACGATGTTCCTGGTCGGCGGCCTGATCCTTGCGGTGGGCTTCCTGCTCACCTTCCCGCTGCGGGAACTGCGCGACGAGGAGTGA\n->510amr___(betalactams)SFH1|CARD|phgb|AF197943|0-705|ARO:3000849|Sfh-1|betalactams|Class_B_betalactamases|SFH1\n-ATGGCTTCTGAAAAAAACTTAACGCTTACCCATTTCAAAGGTCCGCTCTATATTGTAGAAGATAAGGAGTATGTACAGGAAAACTCAATGGTTTACATCGGCACCGATGGTATAACCATCATTGGTGCGACATGGACTCCTGAGACTGCTGAAACTCTTTATAAAGAAATACGGAAGGTCAGCCCCCTCCCCATAAACGAAGTCATTAATACCAATTACCATACTGATCGAGCTGGTGGAAATGCTTATTGGAAAACGCTTGGGGCAAAGATCGTGGCCACACAGATGACCTACGACCTGCAGAAAAGCCAGTGGGGAAGTATTGTAAACTTCACTCGACAAGGTAATAATAAATACCCAAATCTGGAGAAAAGTCTGCCGGATACTGTTTTTCCTGGAGACTTTAACTTGCAAAATGGCAGCATCCGCGCCATGTATTTAGGCGAAGCACATACTAAGGATGGTATCTTTGTGTACTTCCCAGCAGAGCGCGTTTTGTATGGGAACTGCATTCTCAAAGAAAATCTGGGTAATATGAGTTTTGCCAACAGAACTGAGTACCCAAAAACCTTGGAAAAACTTAAAGGACTTATCGAGCAGGGGGAGCTTAAAGTCGACTCGATCATTGCAGGGCATGATACTCCGATACATGACGTAGGCCTGATCGATCACTACCTTACACTGCTTGAGAAGGCGCCTAAGTAA\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_mlst_db/b_cereus_mlst_db.txt --- a/btyper-2.0.3/seq_mlst_db/b_cereus_mlst_db.txt Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1464 +0,0 @@\n-ST\tglp\tgmk\tilv\tpta\tpur\tpyc\ttpi\tclonal_complex\n-1\t1\t1\t1\t1\t1\t1\t1\t\n-2\t1\t1\t2\t1\t1\t2\t1\t\n-3\t2\t1\t1\t1\t1\t1\t1\t\n-4\t13\t8\t8\t11\t11\t12\t7\tST-142 complex\n-5\t6\t4\t3\t4\t14\t4\t3\t\n-6\t4\t3\t4\t6\t13\t5\t6\t\n-7\t5\t4\t3\t4\t15\t6\t7\t\n-8\t7\t8\t16\t13\t2\t16\t7\tST-8 complex\n-9\t15\t7\t7\t2\t5\t16\t13\tST-23 complex\n-10\t15\t6\t10\t8\t3\t7\t14\t\n-11\t34\t1\t32\t1\t33\t37\t24\tST-365 complex\n-12\t15\t7\t7\t2\t7\t10\t13\tST-23 complex\n-13\t10\t8\t15\t12\t2\t16\t7\tST-8 complex\n-14\t14\t8\t9\t7\t10\t15\t10\t\n-15\t9\t8\t16\t13\t2\t16\t9\tST-8 complex\n-16\t15\t7\t7\t2\t6\t8\t13\tST-23 complex\n-17\t12\t8\t11\t11\t9\t13\t5\t\n-18\t11\t9\t14\t12\t12\t14\t7\tST-18 complex\n-19\t12\t8\t9\t11\t11\t12\t8\t\n-20\t16\t6\t12\t9\t4\t11\t15\t\n-21\t18\t9\t5\t15\t17\t9\t11\t\n-22\t12\t8\t8\t11\t9\t12\t23\tST-142 complex\n-23\t15\t7\t7\t2\t5\t8\t13\tST-23 complex\n-24\t12\t8\t9\t14\t11\t12\t10\t\n-25\t30\t8\t16\t13\t2\t16\t7\tST-8 complex\n-26\t3\t2\t31\t5\t16\t3\t4\t\n-27\t34\t1\t17\t16\t18\t33\t24\tST-365 complex\n-28\t19\t2\t18\t17\t19\t3\t2\tST-205 complex\n-29\t20\t8\t8\t35\t8\t17\t17\t\n-30\t17\t5\t6\t3\t9\t34\t12\t\n-31\t21\t2\t19\t5\t16\t18\t2\t\n-32\t5\t4\t3\t4\t15\t6\t16\t\n-33\t22\t9\t18\t18\t20\t19\t7\t\n-34\t33\t8\t13\t19\t2\t17\t17\t\n-35\t23\t10\t5\t15\t21\t23\t11\t\n-36\t18\t11\t3\t20\t22\t22\t18\t\n-37\t18\t10\t14\t20\t22\t22\t18\t\n-38\t24\t12\t50\t21\t23\t31\t19\t\n-39\t37\t9\t18\t12\t24\t21\t7\t\n-40\t39\t9\t14\t12\t24\t14\t7\tST-18 complex\n-41\t25\t10\t22\t36\t26\t23\t11\t\n-42\t26\t21\t12\t25\t27\t32\t18\tST-336 complex\n-43\t27\t20\t23\t8\t4\t24\t21\t\n-44\t11\t9\t14\t12\t2\t25\t7\tST-18 complex\n-45\t19\t14\t21\t5\t19\t3\t2\tST-205 complex\n-46\t33\t8\t13\t10\t8\t17\t7\t\n-47\t29\t2\t24\t5\t32\t3\t22\t\n-48\t13\t8\t25\t11\t9\t35\t10\tST-142 complex\n-49\t15\t7\t15\t2\t7\t10\t13\tST-23 complex\n-50\t13\t16\t9\t28\t4\t12\t8\t\n-51\t31\t9\t14\t29\t28\t27\t7\t\n-52\t32\t19\t26\t30\t9\t28\t10\t\n-53\t33\t17\t27\t31\t29\t17\t7\t\n-54\t11\t9\t14\t32\t12\t14\t7\tST-18 complex\n-55\t15\t7\t8\t2\t7\t26\t13\tST-23 complex\n-56\t15\t7\t7\t2\t7\t26\t13\tST-23 complex\n-57\t34\t15\t28\t33\t30\t29\t24\t\n-58\t35\t6\t29\t9\t4\t7\t21\t\n-59\t22\t9\t30\t18\t20\t21\t7\t\n-60\t36\t15\t28\t34\t30\t29\t25\t\n-61\t15\t7\t7\t27\t7\t26\t13\tST-23 complex\n-62\t38\t1\t32\t1\t18\t33\t24\tST-365 complex\n-63\t15\t24\t29\t11\t4\t39\t28\t\n-64\t33\t8\t36\t19\t41\t17\t27\t\n-65\t15\t7\t14\t2\t6\t14\t13\tST-23 complex\n-66\t40\t9\t14\t26\t37\t36\t7\t\n-67\t15\t7\t34\t2\t5\t10\t13\tST-23 complex\n-68\t22\t9\t34\t18\t20\t40\t29\t\n-69\t15\t7\t36\t2\t5\t8\t13\tST-23 complex\n-70\t15\t7\t36\t2\t37\t8\t13\tST-23 complex\n-71\t41\t25\t12\t9\t4\t12\t15\t\n-72\t43\t26\t35\t40\t39\t41\t30\tST-111 complex\n-73\t13\t8\t9\t14\t9\t12\t31\tST-142 complex\n-74\t42\t27\t37\t41\t40\t42\t32\t\n-75\t44\t1\t32\t1\t18\t33\t24\tST-365 complex\n-76\t34\t15\t28\t38\t30\t29\t33\t\n-77\t3\t23\t38\t39\t38\t43\t34\t\n-78\t24\t22\t33\t37\t34\t38\t5\t\n-79\t7\t2\t14\t4\t2\t3\t15\t\n-80\t37\t9\t21\t5\t19\t21\t4\t\n-81\t3\t2\t19\t5\t36\t18\t2\t\n-82\t45\t21\t20\t22\t42\t20\t26\t\n-83\t63\t13\t58\t23\t25\t44\t35\t\n-84\t46\t9\t39\t29\t24\t45\t7\t\n-85\t47\t28\t14\t12\t2\t36\t7\t\n-86\t33\t8\t13\t19\t8\t17\t17\t\n-87\t109\t18\t120\t24\t31\t30\t20\t\n-88\t18\t10\t22\t15\t35\t9\t11\t\n-89\t14\t8\t40\t19\t2\t17\t17\t\n-90\t6\t4\t41\t5\t43\t46\t3\t\n-91\t51\t2\t21\t5\t19\t3\t38\tST-205 complex\n-92\t6\t4\t42\t4\t16\t6\t3\t\n-93\t14\t29\t43\t11\t9\t47\t8\t\n-94\t13\t29\t9\t14\t9\t12\t31\t\n-95\t13\t29\t9\t11\t2\t12\t8\t\n-96\t33\t8\t44\t19\t2\t17\t17\t\n-97\t15\t6\t47\t8\t4\t8\t7\tST-97 complex\n-98\t40\t28\t14\t12\t2\t50\t7\t\n-99\t13\t8\t9\t14\t46\t12\t31\t\n-100\t13\t8\t46\t28\t9\t12\t7\tST-142 complex\n-101\t33\t33\t44\t19\t2\t17\t17\t\n-102\t49\t31\t45\t43\t45\t49\t37\t\n-103\t24\t12\t50\t21\t23\t31\t40\t\n-104\t24\t12\t33\t37\t48\t31\t19\t\n-105\t55\t12\t33\t47\t49\t31\t41\t\n-106\t56\t1\t51\t1\t50\t52\t24\t\n-107\t57\t1\t52\t1\t1\t52\t1\t\n-108\t38\t1\t32\t16\t18\t33\t24\tST-365 complex\n-109\t34\t1\t32\t1\t51\t37\t24\tST-365 complex\n-110\t61\t38\t55\t1\t1\t53\t19\t\n-111\t43\t26\t35\t42\t39\t41\t30\tST-111 complex\n-112\t57\t1\t56\t1\t1\t54\t42\t\n-113\t62\t1\t57\t52\t55\t37\t43\t\n-114\t8\t10\t105\t36\t17\t70\t11\t\n-115\t64\t10\t9\t36\t56\t22\t11\tST-196 complex\n-116\t25\t10\t22\t53\t57\t23\t44\t\n-117\t15\t6\t29\t46\t4\t8\t39\tST-97 complex\n-118\t47\t28\t14\t26\t2\t36\t7\t\n-119\t47\t8\t49\t12\t2\t36\t7\t\n-120\t6\t4\t3\t4\t46\t6\t36\t\n-121\t53\t2\t59\t54\t47\t3\t2\t\n-122\t53\t2\t59\t17\t47\t3\t2\t\n-123\t48\t30\t33\t37\t44\t48\t45\t\n-124\t14\t32\t48\t45\t58\t51\t7\t\n-125\t58\t34\t53\t48\t52\t20\t26\t\n-126\t45\t35\t20\t49\t42\t20\t26\t\n-127\t6\t4\t53\t4\t16\t6\t3\t\n-128\t59\t36\t54\t50\t53\t56\t26\t\n-129\t34\t1\t60\t1\t51\t55\t24\tST-365 complex\n-130\t65\t1\t1\t1\t1\t37\t1\t\n-131\t60\t37\t61\t51\t54\t57\t46\t\n-132\t24\t22\t33\t55\t59\t58\t47\t\n-133\t66\t36\t62\t56\t53\t59\t32\t\n-134\t1\t1\t1\t57\t1\t1\t1\t\n-135\t1\t39\t1\t1\t1\t1\t1\t\n-136\t31\t8\t14\t44\t2\t36\t7\t\n-137\t37\t28\t14\t12\t37\t36\t7\t\n-138\t37\t9\t14\t12\t12\t14\t7\tST-18 complex\n-139\t50\t8\t14\t12\t12\t36\t7\tST-18 complex\n-140\t52\t2\t21\t5\t19\t3\t38\tST-205 complex\n-141\t54'..b'4\t8\t8\t19\t29\t17\t10\t\n-1336\t13\t2\t8\t11\t9\t12\t7\tST-142 complex\n-1337\t242\t2\t8\t12\t2\t17\t17\t\n-1338\t3\t2\t8\t5\t16\t3\t4\t\n-1339\t93\t6\t23\t9\t242\t198\t15\t\n-1340\t3\t2\t9\t5\t36\t3\t4\t\n-1341\t127\t27\t276\t126\t131\t42\t100\t\n-1342\t229\t5\t271\t126\t16\t183\t190\t\n-1343\t67\t2\t8\t5\t36\t3\t4\t\n-1344\t67\t2\t9\t5\t36\t3\t4\t\n-1345\t229\t5\t271\t240\t11\t183\t190\t\n-1346\t109\t18\t120\t24\t31\t30\t175\t\n-1347\t67\t8\t8\t5\t36\t3\t4\t\n-1348\t15\t7\t7\t2\t96\t26\t13\tST-23 complex\n-1349\t36\t15\t28\t1\t30\t29\t25\t\n-1350\t253\t142\t269\t180\t237\t149\t37\t\n-1351\t254\t30\t277\t37\t44\t199\t5\t\n-1352\t40\t9\t53\t12\t16\t6\t7\t\n-1353\t37\t9\t14\t12\t36\t183\t7\tST-18 complex\n-1354\t6\t26\t53\t4\t16\t6\t3\t\n-1355\t40\t9\t14\t12\t12\t14\t7\tST-18 complex\n-1356\t48\t30\t33\t5\t44\t103\t5\t\n-1357\t67\t2\t63\t5\t16\t3\t4\t\n-1358\t67\t2\t63\t37\t36\t3\t4\t\n-1359\t3\t2\t59\t5\t19\t3\t2\tST-205 complex\n-1360\t209\t4\t3\t4\t14\t4\t3\t\n-1361\t40\t9\t14\t12\t9\t14\t7\tST-18 complex\n-1362\t6\t4\t42\t4\t19\t3\t181\t\n-1363\t40\t26\t3\t4\t15\t6\t16\t\n-1364\t6\t4\t42\t4\t36\t6\t181\t\n-1365\t13\t8\t8\t11\t12\t12\t7\tST-142 complex\n-1366\t19\t2\t21\t5\t19\t3\t183\tST-205 complex\n-1367\t19\t2\t42\t4\t16\t6\t181\t\n-1368\t67\t2\t63\t4\t36\t3\t4\t\n-1369\t5\t4\t3\t5\t15\t6\t16\t\n-1370\t22\t9\t18\t18\t60\t19\t7\t\n-1371\t59\t35\t31\t22\t72\t95\t26\t\n-1372\t12\t2\t31\t5\t16\t3\t4\t\n-1373\t117\t4\t3\t4\t15\t6\t16\t\n-1374\t7\t9\t14\t12\t2\t36\t7\tST-18 complex\n-1375\t3\t2\t31\t5\t20\t3\t4\t\n-1376\t19\t2\t234\t5\t19\t3\t2\tST-205 complex\n-1377\t3\t2\t31\t4\t16\t3\t4\t\n-1378\t21\t2\t86\t5\t32\t18\t2\t\n-1379\t15\t26\t23\t235\t43\t12\t7\t\n-1380\t22\t26\t18\t220\t20\t12\t7\t\n-1381\t117\t26\t18\t220\t20\t12\t7\t\n-1382\t15\t20\t23\t8\t4\t12\t7\tST-97 complex\n-1383\t110\t26\t111\t102\t112\t12\t90\t\n-1384\t81\t26\t18\t220\t20\t12\t90\t\n-1385\t81\t1\t117\t71\t113\t12\t80\t\n-1386\t102\t1\t33\t37\t44\t12\t10\t\n-1387\t14\t26\t3\t4\t46\t12\t4\t\n-1388\t117\t26\t3\t4\t46\t12\t36\t\n-1389\t145\t1\t1\t1\t18\t12\t24\tST-365 complex\n-1390\t48\t26\t33\t37\t44\t12\t5\t\n-1391\t6\t26\t3\t4\t43\t12\t90\t\n-1392\t48\t26\t33\t37\t44\t12\t7\t\n-1393\t6\t26\t3\t4\t14\t12\t3\t\n-1394\t6\t2\t53\t4\t16\t12\t3\t\n-1395\t34\t1\t71\t16\t33\t33\t24\tST-365 complex\n-1396\t6\t4\t41\t5\t43\t12\t3\t\n-1397\t117\t26\t123\t118\t43\t12\t181\t\n-1398\t117\t26\t3\t4\t15\t12\t16\t\n-1399\t48\t26\t118\t62\t66\t12\t52\t\n-1400\t94\t2\t154\t5\t32\t12\t22\t\n-1401\t43\t26\t18\t42\t39\t12\t88\tST-111 complex\n-1402\t81\t26\t117\t111\t113\t12\t80\t\n-1403\t15\t20\t29\t8\t4\t12\t39\t\n-1404\t15\t20\t23\t9\t4\t12\t7\t\n-1405\t15\t7\t268\t2\t93\t12\t13\tST-23 complex\n-1406\t59\t35\t106\t118\t102\t12\t48\t\n-1407\t68\t20\t23\t8\t4\t12\t170\t\n-1408\t15\t6\t23\t235\t4\t12\t39\t\n-1409\t102\t109\t107\t22\t96\t12\t48\t\n-1410\t15\t25\t23\t235\t4\t12\t39\t\n-1411\t43\t26\t1\t42\t39\t12\t7\tST-111 complex\n-1412\t15\t20\t29\t8\t4\t8\t39\tST-97 complex\n-1413\t256\t8\t43\t11\t9\t104\t8\t\n-1414\t145\t1\t278\t1\t18\t52\t24\tST-365 complex\n-1415\t145\t1\t1\t1\t18\t200\t24\tST-365 complex\n-1416\t3\t2\t31\t6\t16\t3\t4\t\n-1417\t177\t2\t21\t5\t114\t3\t55\tST-205 complex\n-1418\t209\t22\t238\t4\t239\t172\t5\t\n-1419\t94\t2\t154\t5\t32\t3\t114\t\n-1420\t62\t1\t93\t109\t55\t102\t210\t\n-1421\t38\t1\t1\t1\t18\t33\t24\tST-365 complex\n-1422\t34\t1\t32\t16\t51\t33\t24\tST-365 complex\n-1423\t13\t151\t279\t11\t9\t12\t8\tST-142 complex\n-1424\t33\t8\t146\t260\t2\t17\t7\t\n-1425\t257\t76\t135\t127\t243\t115\t98\t\n-1426\t34\t1\t93\t17\t18\t33\t24\tST-365 complex\n-1427\t124\t76\t135\t127\t244\t115\t98\t\n-1428\t44\t1\t32\t214\t18\t33\t24\tST-365 complex\n-1429\t34\t1\t71\t1\t18\t201\t89\tST-365 complex\n-1430\t34\t1\t32\t214\t18\t33\t24\tST-365 complex\n-1431\t13\t8\t8\t11\t9\t12\t10\tST-142 complex\n-1432\t201\t36\t8\t210\t196\t176\t32\t\n-1433\t145\t1\t83\t1\t55\t37\t43\t\n-1434\t34\t1\t32\t70\t18\t33\t24\tST-365 complex\n-1435\t6\t4\t41\t4\t43\t5\t36\t\n-1436\t12\t8\t68\t30\t9\t12\t10\t\n-1437\t247\t1\t83\t1\t55\t37\t43\t\n-1438\t51\t14\t21\t5\t19\t3\t55\tST-205 complex\n-1439\t13\t8\t9\t201\t148\t12\t8\t\n-1440\t122\t28\t9\t14\t9\t12\t10\t\n-1441\t47\t9\t14\t12\t2\t50\t7\tST-18 complex\n-1442\t12\t8\t8\t7\t9\t12\t10\tST-142 complex\n-1443\t19\t2\t234\t5\t208\t18\t2\tST-205 complex\n-1444\t152\t10\t5\t218\t151\t136\t11\t\n-1445\t64\t10\t22\t36\t57\t23\t168\t\n-1446\t33\t126\t13\t19\t29\t17\t10\t\n-1447\t216\t129\t223\t225\t118\t171\t128\t\n-1448\t172\t71\t280\t29\t24\t14\t7\t\n-1449\t215\t116\t281\t170\t207\t144\t172\t\n-1450\t218\t87\t104\t69\t103\t202\t18\t\n-1451\t221\t131\t243\t227\t211\t203\t177\t\n-1452\t23\t10\t5\t216\t201\t205\t11\t\n-1453\t206\t1\t285\t214\t18\t29\t19\t\n-1454\t208\t8\t283\t45\t58\t87\t7\t\n-1455\t64\t10\t284\t36\t57\t23\t11\tST-196 complex\n-1456\t220\t118\t282\t226\t210\t185\t176\t\n-1457\t212\t128\t287\t222\t203\t204\t65\t\n-1458\t210\t8\t68\t11\t245\t12\t10\t\n-1459\t207\t1\t286\t1\t1\t37\t42\t\n-1460\t258\t71\t14\t26\t225\t50\t7\t\n-1461\t259\t57\t81\t80\t90\t90\t32\t\n-1462\t13\t8\t8\t11\t9\t12\t211\tST-142 complex\n-1463\t126\t152\t133\t190\t178\t114\t140\t\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_mlst_db/glp.fas --- a/btyper-2.0.3/seq_mlst_db/glp.fas Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,2072 +0,0 @@\n->glp_1\n-GCAGCGTACGTGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTGACGATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGGGTGACGTACCTGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGGACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_2\n-GCAGCGTACGTGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTGACGATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGGGTGACGTACCTGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGACCACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGGACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_3\n-GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTGACGATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGCTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGGACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_4\n-GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAGGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_5\n-GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAGGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_6\n-GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACATTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGCGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_7\n-GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_8\n-GCAGCGTATGCAGTTGGATCAATTAGTGGGGCACATTTGAATCCGGCTTTAACGATAGGA\n-CTTGCGTTTAAGGGAGCGTTCCCATGGAGTGATGTACCTATGTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTCTTGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTACAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGAGCAAATAAATTTGCAGATGGTTTAAATCCATTTATCGTTGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_9\n-GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGATCATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_10\n-GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGAGTGATGTACCAGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_11\n-GCAGCGTATGCGGTTGGATCAATTAGTGG'..b'TTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_250\n-GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n-CTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGCGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGGACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_251\n-GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n-CTTGCTTTTAAGGGAGCGTTCCCATGGAGTGATGTACCTATGTATATCGCAGCACAAATG\n-ATTGGAGCAATTATCGGGGCAGTTATCGTATATTTACACTACTTACCACATTGGAAAGAA\n-ACAGAAGATCCAGGAACGAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGAGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_252\n-GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n-CTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCAGGTTATATCGTAGCACAAATG\n-ATTGGGGCAATTATTGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_253\n-GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGG\n-CTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGTGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGCGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGAGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_254\n-GCAGCATATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCTGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGCGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGCGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_255\n-GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGAGTGATGTACCAGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACAAA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_256\n-GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCGTTAACGATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCAGGTTATATCGTAGCACAAATG\n-ATTGGGGCAATTATTGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_257\n-GCAGCGTATGCAGTTGGATCAATTAGTGGGGCGCATTTGAATCCGGCTTTAACGATAGGA\n-TTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCAGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTCTTGTATATTTACATTACTTACCGCACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAATTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTACAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGAGCAAATAAATTTGCAGATGGTTTAAATCCATTTATCGTAGGTTTCTTAATCGTA\n-AGTATTGGTTTA\n->glp_258\n-GCAGCGTATGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACAATAGGA\n-CTAGCATTTAAGGGAGCGTTCCCATGGAGTGATGTACCAGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTATCGTATATTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAGTTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTGCAAACCTTTTAAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGTGCAAATAAATTTGCAGATGGATTAAATCCATTTATCGTAGGTTTCTTAATTGTA\n-AGTATTGGTTTA\n->glp_259\n-GCAGCGTACGCGGTTGGATCAATTAGTGGGGCACATTTGAATCCAGCTTTAACGATAGGA\n-CTAGCATTTAAGGGAGCGTTCCCATGGAGTGACGTACCAGGTTATATCGCAGCACAAATG\n-ATTGGGGCAATTATCGGGGCAGTTCTTGTATACTTACATTACTTACCACACTGGAAAGAA\n-ACAGAAGATCCAGGAACAAAATTAGGTGTATTTGCAACAGGTCCAGCAATTCCGAACACA\n-TTTACAAACCTTTTGAGTGAAATGATTGGAACATTCGTTTTAGTATTTGGTATATTAGCA\n-ATTGGAGCAAATAAATTTGCAGATGGTTTAAATCCATTTATCGTAGGTTTCTTAATCGTA\n-AGTATTGGTTTA\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_mlst_db/gmk.fas --- a/btyper-2.0.3/seq_mlst_db/gmk.fas Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1520 +0,0 @@\n->gmk_1\n-GTTCTTTCAGGACCTTCTGGTGTTGGGAAAGGAACGGTTCGAAAAGAGCTGTTTAGTCAT\n-GAGGATACACGTTTTCAGTACTCCATTTCAGTAACGACACGTAAGCCACGTGAAGGTGAA\n-GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n-GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n-GTTGAAAAAACATTGCAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAACCGAATTGTCGGTCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n-CGTTTAACGGTAGCGAAAGAAGAAATTGATATGATGGACGCTTACGACTACGTTGTAGAA\n-AACGACCAAGTTGAACTAGCTTGT\n->gmk_2\n-GTTCTTTCAGGACCTTCTGGGGTTGGTAAAGGAACGGTTCGAAAAGAGCTGTTTAGTCAT\n-GAGGATACACGTTTTCAGTACTCCATTTCAGTAACGACACGTAAGCCACGTGAAGGTGAA\n-GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n-GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAACCGAATTGTCGGTCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n-CGTTTAACGGTAGCGAAAGAAGAAATTGATATGATGGACGCTTACGACTACGTTGTAGAA\n-AACGACCAAGTTGAACTAGCTTGT\n->gmk_3\n-GTTCTTTCAGGACCTTCTGGGGTTGGTAAGGGAACGGTTCGAAAAGAGCTGTTTAGTCAT\n-GAGGATACACGTTTTCAGTACTCCATTTCAGTAACGACACGTAAGCCACGTGAAGGTGAA\n-GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n-GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAACCGAATTGTCGGTCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n-CGTTTAACGGTAGCGAAAGAAGAAATTGATATGATGGACGCTTACGACTACGTTGTAGAA\n-AACGACCAAGTTGAACTAGCTTGT\n->gmk_4\n-GTTCTTTCAGGACCTTCTGGGGTTGGTAAAGGAACGGTTCGAAAAGAGCTGTTTAGTCAT\n-GAGGATACACGTTTTCAGTATTCCATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n-GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n-GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAACCGAATTGTCGGTCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n-CGTTTAACGGTAGCGAAAGAAGAAATTGATATGATGGACGCTTACGACTACGTTGTAGAA\n-AACGACCAAGTTGAACTAGCTTGT\n->gmk_5\n-GTTCTTTCAGGACCTTCTGGGGTTGGTAAAGGAACGGTTCGAAAAGAGCTGTTTAGTCAT\n-GAGGATACACGTTTTCAGTACTCCATTTCAGTAACGACACGTAAGCCACGTGAAGGTGAA\n-GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n-GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCCCCAAGTTTA\n-TCTGAACTAAAGAACCGTATTGTCGGCCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n-CGTTTAACGGTAGCGAAAGAAGAAATCGAAATGATGGACGCTTACGACTATGTTGTAGAA\n-AACGATCAAGTTGAATTAGCTTGT\n->gmk_6\n-GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n-GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n-GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTTGAGGAAATGATTCGTAAT\n-GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n-CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n-AACGATCAAGTTGAATTAGCTTGT\n->gmk_7\n-GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n-GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n-GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n-GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAGCCGTATTGTCGGCCGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n-CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n-AACGATCAAGTTGAATTAGCTTGT\n->gmk_8\n-GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGGACGGTTCGTAAAGAGCTGTTTAGCCAT\n-GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n-GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n-GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n-GTTGAAAAAACAT'..b'\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAAAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n-CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n-AACGATCAAGTTGAATTAGCTTGT\n->gmk_146\n-GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n-GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n-GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n-GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n-CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n-AACGATCAAGTTGAATTAGCTTGT\n->gmk_147\n-GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n-GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAACCGCGTGAAGGTGAA\n-GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTTGAGGAAATGATTCGTAAT\n-GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n-CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n-AACGATCAAGTTGAATTAGCTTGT\n->gmk_148\n-GTTCTTTCAGGACCTTCTGGGGTTGGTAAAGGAACGGTTCGAAAAGAGCTATTTAGTCAT\n-GAGGATACACGTTTTCAGTACTCCATTTCAGTAACGACACGTAAGCCACGTGAAGGTGAA\n-GTGGATGGTGTGGATTATTTCTTTAAAGAGAGAGAAGAATTTGAGGAAATGATTCGTAAT\n-GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCAATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCGCCTCCAAGTTTA\n-TCTGAACTAAAGAACCGAATTGTCGGTCGTGGTACAGAAACTGAAGATGTTATTGAAAAT\n-CGTTTAACGGTAGCGAAAGAAGAAATTGATATGATGGACGCTTACGACTACGTTGTAGAA\n-AACGACCAAGTTGAACTAGCTTGT\n->gmk_149\n-GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGGACGGTTCGTAAAGAGCTGTTTAGCCAT\n-GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n-GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCATAAT\n-GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n-CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n-AACGATCAAGTTGAATTAGCTTGT\n->gmk_150\n-GTTCTTTCAGGGCCTTCTGGGGTGGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n-GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n-GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n-GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAGCCGTATTGTCGGCCGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n-CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n-AACGATCAAGTTGAATTAGCTTGT\n->gmk_151\n-GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGGACGGTTCGTAAAGAGCTGTTTAGCCAT\n-GAGGATACACGTTTTCAGTACTCTATTTCAGTAACGACCCGTAAGCCGCGTGAAGGTGAA\n-GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n-GAAAAATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n-CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n-AACGATCAAGTTGAATTAGCTTGT\n->gmk_152\n-GTTCTTTCAGGGCCTTCTGGGGTTGGAAAAGGAACGGTTCGTAAAGAGCTGTTTAGCCAT\n-GAGGATACACGTTTTCAATACTCTATTTCAGTAACGACACGTAAGCCGCGTGAAGGTGAA\n-GTAGATGGTGTGGATTATTTCTTTAAAGAAAGAGAAGAATTCGAGGAAATGATTCGTAAT\n-GAAAGATTACTTGAGTGGGCTGAGTTCGTAGGTAATTATTACGGAACACCGATTGACTAT\n-GTTGAAAAAACATTACAAGAAGGAAAAGATGTATTCTTAGAAATTGAAGTGCAAGGAGCA\n-ATTCAAGTTAAGAAAGCTTTCCCAGAAGGTGTATTTATTTTCTTAGCACCTCCAAGTTTA\n-TCTGAACTAAAGAGCCGTATTGTCGGACGTGGTACAGAGACTGAAGATGTTATTGAAAAT\n-CGTTTAACTGTAGCGAAAGAAGAAATCGAGATGATGGACGCTTACGACTATGTAGTAGAA\n-AACGATCAAGTTGAATTAGCTTGT\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_mlst_db/ilv.fas --- a/btyper-2.0.3/seq_mlst_db/ilv.fas Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,2296 +0,0 @@\n->ilv_1\n-GAAGAAGGTGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCAGTTATTAAA\n-AGCGGGGCAACTGAAGTAAAACGATTTGAAGGACCTTGTGTTATTTTTAATTCACAAGAT\n-GAGGCGCTTGCCGGCATTATGCTTGGGAAGGTTAAGAAAGGAGATGTAGTTGTTATTCGT\n-TATGAAGGACCAAGAGGCGGTCCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCGATT\n-GCTGGCATGGGATTAGGTGCAGATGTTGCGTTATTAACCGATGGTCGTTTCTCTGGTGCT\n-TCACGTGGTATTTCAGTAGGTCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n-CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n->ilv_2\n-GAAGAAGGTGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCAGTTATTAAA\n-AGCGGGGCAACTGAAGTAAAACGATTTGAAGGACCTTGTGTTATTTTTAATTCACAAGAT\n-GAGGCGCTTGCCGGCATTATGCTTGGGAAGGTTAAGAAAGGAGATGTAGTTGTTATTCGT\n-TATGAAGGACCAAGAGGCGGTCCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCGATT\n-GCTGGCATGGGATTAGGTGCAGATGTTGCGTTATTAACCGATGGTCGTTTCTCTGGTGCT\n-TCACGTGGTATTTCAGCAGGTCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n-CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n->ilv_3\n-GAAGAAGGGGGATTACGTATATTAAAAGGAAACCTCGCGAAAGATGGAGCAGTTATTAAA\n-AGCGGAGCAACTGAAGTAAAACGATTTGAAGGACCATGCGTTATTTTTAATTCACAAGAT\n-GAGGCTCTTGCGGGTATTATGCTTGGGAAAGTGAAGAAAGGAGATGTAGTTGTTATTCGT\n-TATGAAGGACCAAGAGGCGGTCCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCAATT\n-GCTGGCATGGGATTAGGTGCAGATGTTGCGCTATTAACGGATGGTCGTTTCTCTGGTGCT\n-TCACGTGGTATTTCGGTAGGGCATATTTCACCAGAAGCAGCTGCGGGCGGGACGATTGCA\n-CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n->ilv_4\n-GAAGAAGGGGGATTACGTATATTAAAAGGAAACCTTGCGAAAGATGGGGCAGTTATCAAA\n-AGCGGAGCGACCGAAGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCGCTTGCGGGTATTATGCTTGGGAAAGTGAAGAAAGGAGATGTAGTTGTTATTCGT\n-TATGAAGGACCAAGAGGCGGTCCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCAATT\n-GCTGGCATGGGATTAGGTGCAGATGTTGCGCTATTAACGGATGGTCGTTTCTCTGGTGCT\n-TCACGTGGTATTTCAGTAGGGCATATTTCACCAGAAGCAGCTGCGGGCGGGACGATTGCA\n-CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n->ilv_5\n-GAAGAAGGAGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCGGTTATTAAA\n-AGCGGAGCAACAGAAGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCGCTTGCCGGCATTATGCTTGGGAAAGTTAAGAAAGGAGATGTAGTTGTTATTCGC\n-TATGAAGGACCAAGAGGCGGACCTGGTATGCCGGAAATGTTAGCACCAACATCAGCAATT\n-GCTGGTATGGGATTAGGAGCAGATGTTGCACTTTTAACTGATGGTCGCTTCTCTGGTGCT\n-TCACGTGGTATTTCGGTAGGGCACATTTCACCAGAAGCAGCAGCTGGCGGAACGATTGCA\n-CTTCTTGAACAAGGAGATATTGTATGTATTGAT\n->ilv_6\n-GAAGAAGGGGGATTGCGTATATTAAAAGGCAACCTTGCGAAAGACGGAGCAGTTATTAAA\n-AGCGGTGCAACTGAAGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCACTTGCTGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n-TATGAAGGACCAAGAGGTGGTCCTGGTATGCCAGAAATGTTAGCACCAACATCAGCAATT\n-GCTGGTATGGGATTAGGTGCAGATGTTGCACTATTAACGGATGGTCGTTTCTCTGGAGCT\n-TCACGTGGTATTTCGGTAGGGCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n-CTTCTCAAGCAAGGGGATATCGTTTGTATCGAT\n->ilv_7\n-GAAGAAGGGGGATTACGTATATTAAAAGGAAACCTTGCGAAAGATGGAGCGGTTATTAAA\n-AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCGCTTGCGGGCATTATGCTTGGAAAAGTGAAGAAAGGCGATGTAGTTGTTATTCGC\n-TATGAAGGACCAAGAGGTGGCCCTGGTATGCCAGAGATGTTAGCGCCAACTTCAGCGATT\n-GCTGGAATGGGATTAGGTGCAGATGTTGCGCTATTAACGGATGGTCGTTTCTCGGGTGCT\n-TCACGTGGTATTTCAGTAGGACATATTTCACCAGAAGCAGCTGCGGGTGGAACGATTGCA\n-CTTCTTGAACAAGGGGATATTGTATGTATTGAT\n->ilv_8\n-GAAGAGGGGGGCTTACGTATATTAAAAGGAAATCTTGCTAAAGATGGAGCGGTTATTAAA\n-AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGGCCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCACTTGCGGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n-TATGAAGGACCAAGAGGTGGGCCTGGTATGCCAGAAATGTTAGCCCCAACATCAGCAATT\n-GCTGGAATGGGATTAGGTGCTGAGGTTGCATTATTAACAGATGGACGTTTTTCTGGAGCT\n-TCACGTGGAATTTCAGTAGGACATATTTCACCAGAAGCAGCAGCGGGCGGGATGATTGCA\n-CTTCTTGAACAAGGGGATATTGTATGTATTGAT\n->ilv_9\n-GAAGAGGGGGGCTTACGTATATTAAAAGGAAATCTTGCTAAAGATGGAGCGGTTATTAAA\n-AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGGCCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCACTTGCGGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n-TATGAAGGACCAAGAGGTGGCCCTGGTATGCCAGAAATGTTAGCCCCAACATCAGCAATT\n-GCTGGAATGGGATTAGGTGCTGAGGTTGCATTATTAACAGATGGACGTTTTTCTGGAGCT\n-TCACGTGGAATTTCAGTAGGACATATTTCACCAGAAGCAGCAGCGGGCGGGATGATTGCA\n-CTTCTTGAACAAGGGGATATTGTATGTATTGAT\n->ilv_10\n-GAGGAAGGAGGATTGCGTATATTAAAAGGCAACCTTGCGAAAGATGGAGCAGTTATTAAA\n-AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGACCTTGTGTTATTTTTAATTCACAAGAT\n-GAGGCACTTGCTGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n-TATGAAGGACCAAGAGGTGGCCCTGGTATGCCAGAAATGTTAGCACCAA'..b'AAAGGAGATGTAGTTGTTATTCGT\n-TATGAAGGACCAAGAGGCGGTCCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCGATT\n-GCTGGCATGGGATTAGGTGCAGATGTTGCGTTATTAACTGATGGTCGTTTCTCTGGTGCT\n-TCACGTGGTATTTCAGTAGGTCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n-CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n->ilv_279\n-GAAGAGGGGGGCTTACGTATATTAAAAGGAAATCTTGCTAAAGATGGAGCGGTTATTAAA\n-AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGGCCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCACTTGCAGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n-TATGAAGGGCCAAGAGGTGGCCCTGGTATGCCAGAAATGTTAGCCCCAACATCAGCAATT\n-GCTGGAATGGGATTAGGTGCTGAGGTTGCATTATTAACAGATGGACGTTTTTCTGGAGCT\n-TCACGTGGAATTTCAGTAGGACATATTTCACCAGAAGCAGCAGCGGGCGGGATGATTGCA\n-CTTCTTGAACAAGGGGATATTGTATGTATTGAT\n->ilv_280\n-GAGGAAGGAGGATTGCGTATATTAAAAGGCAACCTTGCGAAAGATGGAGCGGTTATTAAA\n-AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCACTTGCTGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n-TATGAAGGACCAAGAGGTGGCCCTGGTATGCCAGAAATGTTAGCACCAACATCAGCAATT\n-GCTGGAATGGGATTAGGTGCTGAGGTTGCATTATTAACGGATGGACGTTTCTCTGGGGCT\n-TCACGTGGAATTTCAGTAGGACATATTTCACCAGAAGCAGCAGCTGGTGGAACGATCGCA\n-CTTCTTGAACAAGGGGATATTGTATGTATTGAT\n->ilv_281\n-GAAGAAGGTGGATTACGTATATTAAAAGGAAACCTTGCGAAAGATGGGGCAGTTATTAAA\n-AGCGGGGCAACCGAGGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCGCTTGCGGGCATTATGCTTGGAAAAGTGAAAAAAGGAGATGTCGTTGTTATTCGT\n-TATGAAGGACCAAGAGGCGGCCCTGGTATGCCAGAAATGTTAGCTCCGACGTCAGCAATT\n-GCCGGCATGGGATTAGGTGCTGATGTTGCGCTATTAACGGATGGACGTTTCTCCGGTGCT\n-TCACGTGGTATTTCGGTAGGACATATTTCACCGGAAGCAGCTGCAGGTGGAACGATTGCT\n-CTTCTTGAGAAAGGGGATATAGTTTGTATTGAT\n->ilv_282\n-GAAGAAGGGGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCGGTTATTAAA\n-AGTGGGGCAACAGAAGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCGCTTGCCGGCATTATGCTTGGGAAAGTCAAGAAAGGAGATGTAGTTGTTATTCGT\n-TACGAAGGACCAAGAGGCGGACCTGGTATGCCGGAAATGTTAGCACCAACGTCAGCAATT\n-GCTGGCATGGGATTGGGGGCAGATGTTGCACTTTTAACTGATGGTCGTTTCTCTGGTGCT\n-TCACGTGGTATTTCGGTAGGGCATATTTCACCAGAAGCAGCTGCGGGAGGAACGATTGCA\n-CTTCTGGAACAAGGGGATATAGTTTGTATTGAT\n->ilv_283\n-GAGGAAGGAGGATTGCGTATATTAAAAGGAAACCTTGCGAAAGATGGAGCTGTTATTAAA\n-AGCGGTGCAACAGAGGTAAAGCGTTTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCACTTGCTGGCATTATGCTTGGGAAAGTGAAAAAAGGAGATGTAGTTGTCATTCGT\n-TATGAAGGACCAAGAGGTGGCCCTGGTATGCCAGAAATGTTAGCACCAACGTCAGCGATT\n-GCTGGTATGGGATTAGGTGCAGATGTTGCGCTATTAACGGATGGTCGTTTCTCGGGTGCT\n-TCACGTGGTATTTCAGTAGGGCATATTTCACCAGAAGCAGCTGCGGGCGGAACGATTGCA\n-CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n->ilv_284\n-GAAGAAGGAGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCGGTTATTAAA\n-AGCGGAGCAACAGAAGTAAAACGATTTGAAGGACCTTGCGTTATTTTTAATTCACAAGAT\n-GAGGCGCTTGCCGGCATTATGCTTGGGAAAGTTAAGAAAGGAGATGTAGTTGTTATTCGC\n-TATGAAGGACCAAGAGGCGGACCTGGTATGCCGGAAATGTTAGCACCAACATCAGCAATT\n-GCTGGTATGGGATTAGGAGCAGATGTTGCACTTTTAACTGATGGTCGCTTCTCTGGTGCT\n-TCACGTGGTATTTCGGTAGGGCACATTTCACCAGAAGCAGCAGCTGGCGGAACGATTGCA\n-ATTCTTGAACAAGGAGATATTGTATGTATTGAT\n->ilv_285\n-GAAGAAGGTGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCAGTTATTAAA\n-AGCGGGGCAACCGAAGTAAAACGATTTGAAGGGCCTTGTGTTATTTTTAATTCACAAGAT\n-GAGGCGCTTGCCGGCATTATGCTTGGAAAGGTTAAGAAAGGAGATGTAGTTATTATTCGT\n-TATGAAGGACCAAGAGGCGGTCCAGGTATGCCGGAAATGTTAGCACCAACGTCAGCGATT\n-GCTGGCATGGGATTAGGTGCGGATGTTGCGTTATTAACCGATGGTCGTTTCTCTGGTGCT\n-TCACGTGGTATTTCAGTAGGGCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n-CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n->ilv_286\n-GAAGAAGGTGGATTACGTATATTAAAAGGAAACCTTGCGAAAGACGGAGCAGTTATTAAA\n-AGCGGGGCAACTGAAGTAAAACGATTTGAAGGACCTTGTGTTATTTTTAATTCACAAGAT\n-GAGGCGCTTGCCGGCATTATGCTTGGGAAGGTTAAGAAAGGAGATGTAGTTATTATTCGT\n-TATGAAGGACCAAGAGGCGGTCCAGGTATGCCGGAAATGTTAGCACCAACGTCAGCGATT\n-GCTGGCATGGGATTAGGTGCGGATGTTGCGTTATTAACCGATGGTCGTTTCTCTGGTGCT\n-TCACGTGGTATTTCAGTAGGGCATATTTCGCCAGAAGCAGCTGCGGGCGGAACGATTGCA\n-CTTCTTGAACAAGGGGATATCGTTTGTATCGAT\n->ilv_287\n-GAAGAGGGGGGCTTACGTATTTTAAAAGGAAATCTAGCGAAAGATGGAGCGGTTATTAAA\n-AGTGGGGCAACCGAAGTAAAACGATTTGAAGGACCGTGCGTTATTTTTAATTCACAAGAT\n-GAGGCACTTGCCGGCATTATGCTTGGGAAAGTAAAAAAAGGAGATGTAGTTGTCATTCGT\n-TATGAAGGGCCAAGAGGCGGACCAGGTATGCCTGAAATGTTAGCACCAACATCAGCAATC\n-GCTGGTATGGGATTAGGTGCTGAGGTTGCATTATTAACGGACGGACGTTTCTCTGGAGCT\n-TCACGTGGCATTTCGGTAGGACATATTTCACCAGAAGCAGCTGCGGGTGGAACAATCGCA\n-CTACTTGAACAAGGAGATATTGTATGTATTGAT\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_mlst_db/pta.fas --- a/btyper-2.0.3/seq_mlst_db/pta.fas Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,2080 +0,0 @@\n->pta_1\n-AATTTAACATTAGCAGGCGTTGATATTTACGATCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACAGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAATTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTTGCTGATTGCGCAATTAACATTGCACCAAATAGCCAAGATTTAGCTGAA\n-ATTGGTATCGAGAGTGCGAAAACTGCTGAACTATTCGGTATTGACCCACGCGTT\n->pta_2\n-AATTTAACATTAGCAGGCGTTGATATTTATGACCCAGCTACATATGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATTGGTATCGAGAGTGCAAAAACTGCTGAATTATTCGGTATTGACCCACGCGTT\n->pta_3\n-AATTTAACATTAGCAGGCGTTGATATTTATGATCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGTGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATTGGTATCGAGAGTGCGAAAACTGCTGAATTATTCGGTATTGACCCACGCGTT\n->pta_4\n-AATTTAACATTAGCAGGCGTTGATATTTACGATCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAATAGCCAAGATTTAGCTGAA\n-ATTGGTATCGAAAGTGCGAAAACTGCTGAACTATTCGGCATTGATCCACGCGTT\n->pta_5\n-AATTTAACATTAGCAGGCGTTGATATTTACGATCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGTGCAATTAACATTGCACCAAATAGCCAAGATTTAGCTGAA\n-ATTGGTATCGAAAGTGCGAAAACTGCTGAACTATTCGGCATTGATCCACGCGTT\n->pta_6\n-AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCGGCTCATTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAATAGCCAAGATTTAGCTGAA\n-ATTGGTATCGAAAGTGCGAAAACTGCTGAACTATTCGGCATTGATCCACGCGTT\n->pta_7\n-AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATCGGTATCGAAAGTGCGAAAACAGCTGAGTTATTCGGCATTGATCCACGCGTT\n->pta_8\n-AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCGGCACTTCAAATTATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGTGTT\n->pta_9\n-AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCGGCACTTCAAATTATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGCGTT\n->pta_10\n-AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACG'..b'\n-ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGTGTT\n->pta_252\n-AATTTAACATTAGCAGGCATTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCGACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGTGTT\n->pta_253\n-AACTTAACATTAGCAGGTGTTGATATTTATGATCCAGCTACATATGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGGAAAGCGACAGAAGAAGATGCACGTAAA\n-ATCCTTAAAGACGAAAACTACTTTGGTACAATGCTTGTATACATGGGTAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCATTCTACAGCTGACACAGTTCGTCCAGCACTTCAAATCATT\n-AAAACAAAACCAGGTGTTACAAAAACTTCAGGCGTATTCATCATGGTACGTGAAGATGAG\n-AAATATGTATTCGCTGATTGCGCAATCAATATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATTGGTATTGAAAGTGCGAAAACTGCTGAGTTATTCGGCATCGATCCACGTGTT\n->pta_254\n-AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACAGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAATTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATC\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTGCGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATTGGTATCGAGAGTGCGAAAACAGCTGAACTATTCGGTATTGATCCACGTGTT\n->pta_255\n-AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCGACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n-AAAACAAAACCAGACGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGTGTT\n->pta_256\n-AATTTAACATTAGCAGGCGTTGATATTTTCGACCCAGCTACATACGAAGAAATGGATACA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAATTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATC\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTGCGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATTGGTATCGAGAGTGCGAAAACAGCTGAACTATTCGGTATTGATCCACGCGTT\n->pta_257\n-AATTTAACATTAGCAGGCGTTGATATTTATGACCCAGCTACATATGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATTGGTATCGAGAGTGCGAAAACTGCTGAATTATTTGGTATTGACCCACGCGTT\n->pta_258\n-AATTTAACATTAGCAGGCGTTGATATTTATGACCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGTCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATCATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATTGGTATCGAGAGTGCGAAAACTGCTGAATTATTCGGTATTGACCCACGCGTT\n->pta_259\n-AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCAACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCTAACAGCCAAGATTTAGCTGAA\n-ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGCGTT\n->pta_260\n-AATTTAACATTAGCAGGCGTTGATATTTACGACCCAGCTACATACGAAGAAATGGATGCA\n-ATGGTAGCATCTTTCGTTGAACGCCGTAAAGGTAAAGCGACTGAAGAAGACGCTCGCAAA\n-ATCCTTAAAGACGAAAACTACTTCGGTACAATGCTTGTATACATGGGCAAAGCACACGGT\n-TTAGTAAGTGGTGCAGCTCACTCTACAGCTGATACAGTTCGTCCAGCACTTCAAATTATT\n-AAAACAAAACCAGGCGTTACAAAAACTTCTGGCGTATTCATCATGGTACGTGAAGAAGAG\n-AAATATGTATTCGCTGATTGCGCAATTAACATTGCACCAAACAGCCAAGATTTAGCTGAA\n-ATCGGTATCGAAAGTGCGAAAACTGCTGAGTTATTCGGCATTGATCCACGCGTT\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_mlst_db/pur.fas --- a/btyper-2.0.3/seq_mlst_db/pur.fas Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1715 +0,0 @@\n->pur_1\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAAGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACATGGCAAGGAATTATCG\n-TATAACAATATTAACGATGCAGATGCAGCGCTTAGTATCGTGAAAGAATTTACAGAACCA\n-GCAGTAGTAGCGGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGT\n->pur_2\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n-AAAAAGCAAGACTTACGCTATGGCGAGAACCCACATCAAAAAGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACGTCTTCTGTTGCATACGCAGAACAATTACACGGTAAGGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCGCTTAGCATCGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAGCATATGAATCCATGTGGTGTTGGAGTAGGA\n->pur_3\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAAGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACTTCTTCTGTTGCATATGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCGCTTAGCATCGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n->pur_4\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAAGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCGCTTAGCATCGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n->pur_5\n-AAATGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCATATGATGCGCTAATTTCT\n-AACTATTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTCGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCGCTCAGCATCGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n->pur_6\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCATATGATGCGCTAATTTCT\n-AACTATTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTCGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCGCTCAGCATCGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAACATATGAATTCATGTGGTGTTGGAGTAGGA\n->pur_7\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCATATGATGCGCTAATTTCT\n-AACTATTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTCGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCGCTCAGCATCGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n->pur_8\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACGGTGACATTTGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCACTTAGCATCGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n->pur_9\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCACTTAGCATCGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n->pur_10\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCACTTAGCATAGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n->pur_11\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n-CCATTCGCGGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCACTTAGCATCGT'..b'\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n-AAAAAACAAGATTTACGCTATGGAGAAAATCCACATCAAAAAGCAACATTCTATAAAGCA\n-CCATTCGCTGTAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCT\n-TACAACAATATTAACGATGCAGATGCAGCACTTAGTATTGTAAAAGAATTTACAGAGCCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCGTGTGGTGTTGGAGTGGGT\n->pur_236\n-AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACAGTGACATTTGAG\n-AAAAAGCAAGATTTACGCTATGGAGAAAATCCACATCAAAAAGCAACATTCTATAAAGCG\n-CCATTCGCTGTAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCT\n-TACAACAATATTAACGATGCAGATGCAGCACTTAGTATTGTAAAAGAATTTACAGAGCCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTGGGT\n->pur_237\n-AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n-AAAAAACAAGATTTACGCTATGGAGAAAATCCACATCAAAAAGCAACATTCTATAAAGCA\n-CCATTTGCTGTAACTTCTTCTGTTGCGTACGCAGAACAATTACACGGTAAAGAATTATCT\n-TATAACAATATTAACGATGCAGATGCAGCGCTTAGTATCGTGAAAGAATTTACAGAGCCA\n-GCAGTAGTTGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n->pur_238\n-AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCAGCATATGATGCGTTAATTTCT\n-AACTATTTAACAGAGCAAATGGGTGAAGAAAGCCCAGAAACATTAACTGTGACATTTGAG\n-AAAAAACAAGATTTACGTTATGGCGAAAATCCACATCAAAAAGCAACATTCTATAAAGCA\n-CCATTCGCTGCGACTTCTTCTGTTGCATACGCAGAACAGTTGCACGGTAAAGAATTGTCT\n-TATAACAATATCAACGATGCAGACGCAGCACTTAGCATTGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCGGTAAAACATATGAATCCATGTGGCGTTGGAGTGGGT\n->pur_239\n-AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n-AACTACTTAACAGAGCAAATGGGAGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n-AAAAAACAAGATTTACGCTATGGAGAAAATCCACATCAAAAAGCAACATTTTATAAAGCA\n-CCATTCGCTGTAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAGGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCGCTTAGCATCGTGAAAGAATTTACAGAACCA\n-GCAGTAGTAGCGGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGT\n->pur_240\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACGGTGACATTTGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGTG\n-CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCGCTTAGCATCGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n->pur_241\n-AAACGCAAACTAGCTGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n-AACTACTTAACAGAGCAAATGGGAGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n-AAAAAACAAGATTTACGCTATGGAGAAAATCCACATCAAAAAGCAACATTTTATAAAGCA\n-CCATTCGCTGTAACTTCTTCTGTTGCGTACGCAGAACAATTACATGGCAAAGAATTATCG\n-TATAACAATATTAACGATGCAGATGCAGCGCTTAGTATCGTGAAAGAATTTACAGAACCA\n-GCAGTAGTAGCGGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGT\n->pur_242\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAAGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAATAATATTAATGATGCAGACGCAGCGCTTAGCATCGTAAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n->pur_243\n-AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n-AAAAAACAAGATTTACGTTATGGAGAAAATCCACATCAAAAAGCAACATTCTATAAAGCG\n-CCATTCGCTGTAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCT\n-TATAACAATATTAACGATGCAGATGCAGCGCTTAGTATCGTGAAAGAATTTACAGAACCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCGTGTGGTGTTGGAGTAGGA\n->pur_244\n-AAACGTAAATTAGCAGCGAAAGTATTCCGTCATACAGCGGCATATGATGCGTTAATCTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGCCCAGAAACATTAACAGTGACATTTGAG\n-AAAAAACAAGATTTACGTTATGGAGAAAATCCACATCAAAAAGCAACATTCTATAAAGCG\n-CCATTCGCTGTAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCT\n-TATAACAATATTAACGATGCAGATGCAGCGCTTAGTATCGTGAAAGAATTTACAGAACCA\n-GCAGTAGTAGCGGTAAAACATATGAATCCGTGTGGTGTTGGAGTAGGA\n->pur_245\n-AAACGTAAACTAGCAGCGAAAGTATTCCGTCATACAGCAGCGTATGATGCGTTAATTTCT\n-AACTACTTAACAGAGCAAATGGGTGAAGAAAGTCCAGAAACATTAACTGTGACATTTGAG\n-AAAAAGCAAGACTTACGTTATGGCGAGAACCCACATCAAAAGGCAACTTTCTATAAAGCG\n-CCATTCGCAGCAACTTCTTCTGTTGCATACGCAGAACAATTACACGGTAAAGAATTATCG\n-TATAACAATATTAATGATGCAGACGCAGCACTTAGCATAGTAAAAGAATTTACAGAATCA\n-GCAGTAGTAGCAGTAAAACATATGAATCCATGTGGTGTTGGAGTAGGA\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_mlst_db/pyc.fas --- a/btyper-2.0.3/seq_mlst_db/pyc.fas Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1640 +0,0 @@\n->pyc_1\n-TACTACGCACCGTTTGAAAGTGGTATGAACGCTCCTCATACAGAGGTATATATGCACGAA\n-ATGCCAGGCGGACAGTACAGTAATTTACAACAACAAGCGAAAGTGGTTGGCTTAGGCGAT\n-CGCTTCGATGAAGTGAAAGTAATGTATCGCCGTGTGAATGATATGTTTGGTGATATTGTT\n-AAAGTAACGCCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAATCAC\n-TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGACTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n-ATT\n->pyc_2\n-TACTACGCACCGTTTGAAAGTGGTATGAACGCTCCTCATACAGAGGTATATATGCACGAA\n-ATGCCAGGCGGACAGTACAGTAATTTACAACAACAAGCGAAAGTGGTTGGTTTAGGCGAT\n-CGCTTCGATGAAGTGAAAGTAATGTATCGCCGTGTGAATGATATGTTTGGTGATATTGTT\n-AAAGTAACGCCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAATCAC\n-TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGACTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n-ATT\n->pyc_3\n-TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n-ATGCCAGGCGGACAGTATAGTAATTTACAACAACAAGCGAAAGCGGTTGGCTTAGGCGAT\n-CGTTTCGATGAAGTGAAAGTAATGTACCGCCGTGTGAATGACATGTTTGGTGATATTGTT\n-AAAGTAACACCATCATCTAAAGTTGTTGGTGATATGGCATTATTCATGGTTCAAAATCAC\n-TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n-ATT\n->pyc_4\n-TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n-ATGCCAGGCGGACAGTATAGTAATTTACAACAACAAGCGAAAGCAGTTGGCTTAGGCGAT\n-CGTTTCGATGAAGTGAAAGTAATGTACCGCCGTGTGAATGACATGTTTGGTGATATTGTT\n-AAAGTAACACCATCATCTAAAGTTGTTGGTGATATGGCATTATTCATGGTTCAAAATCAC\n-TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n-ATT\n->pyc_5\n-TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n-ATGCCAGGCGGACAGTATAGTAATTTACAACAACAAGCGAAAGCGGTTGGCTTAGGCGAT\n-CGTTTCGATGAAGTGAAAGTAATGTACCGCCGTGTGAATGACATGTTTGGTGATATTGTT\n-AAAGTAACACCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAATCAC\n-TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n-ATT\n->pyc_6\n-TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n-ATGCCAGGCGGACAGTATAGTAATTTACAACAACAAGCGAAAGCGGTTGGCTTAGGCGAT\n-CGTTTCGATGAAGTGAAAGTAATGTACCGCCGTGTGAATGACATGTTTGGTGATATTGTT\n-AAAGTAACGCCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAATCAC\n-TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n-ATT\n->pyc_7\n-TACTATGCACCGTTTGAAAGTGGTATGAATGCACCTCACACAGAGGTATATATGCATGAA\n-ATGCCAGGTGGACAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n-CGCTTTGATGAAGTGAAAGTAATGTACCGTCGTGTGAATGACATGTTTGGAGATATTGTA\n-AAAGTAACACCGTCATCAAAAGTTGTTGGCGATATGGCGTTATTTATGGTTCAAAACCAC\n-CTGACAGAACAAGATGTTTTAGAGCGTGGACATGCTTTGGACTTCCCTGGATCTGTTGTT\n-GAAATGTTCTCTGGTGATTTAGGTCAACCGTACGGTGGTTTCCCGAAAGAATTGCAAAAG\n-ATT\n->pyc_8\n-TACTATGCACCGTTTGAAAGTGGTATGAATGCACCTCACACAGAGGTATATATGCATGAA\n-ATGCCAGGTGGACAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n-CGCTTTGATGAAGTGAAAGTAATGTACCGTCGTGTGAATGACATGTTTGGAGATATTGTA\n-AAAGTAACACCATCATCAAAAGTTGTTGGCGATATGGCGTTATTTATGGTTCAAAACCAC\n-CTGACAGAACAAGATGTTTTAGAGCGTGGACATGCTTTGGACTTCCCTGGATCTGTTGTT\n-GAAATGTTCTCTGGTGATTTAGGTCAACCGTACGGTGGTTTCCCGAAAGAATTGCAAAAG\n-ATT\n->pyc_9\n-TACTATGCTCCATTTGAAAGTGGTATGAATGCTCCTCACACAGAGGTATATATGCATGAA\n-ATGCCGGGTGGACAGTATAGTAATCTTCAACAACAAGCAAAAGCGGTTGGCTTAGGAGAT\n-CGCTTTGATGAAGTTAAAGTGATGTATCGCCGTGTTAATGATATGTTTGGCGATATTGTA\n-AAAGTAACACCATCATCTAAAGTTGTCGGTGATATGGCATTATTTATGGTTCAAAATCAC\n-CTCACAGAACAAGATATTTTAGAACGTGGACATGCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAGAATTACAAAAA\n-ATT\n->pyc_10\n-TACTATGCACCGTTTGAAAGTGGTATGAATGCACCTCACACAGAGGTATATATGCATGAA\n-ATGCCAGGTGGACAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n-CGCTTTGATGAAGTGAAAGTAATGTACCGTCGTGTGAATGACATGTTTGGAGATATTGTA\n-AAAGTAACACCGTCATCAAAAGTTGTTGGCGATATGGCATTATTTATGGTTCAAAACCAC\n-CTGACAGAACAAGATGTTTTAGAGCGTGGACATGCGTTGGACTTCCCGGGATCTGTTGTT\n-GAAATGTTCTCTGGTGATTTAGGTCAACCGTACGGTGGTTTCCCGAAAGAATTGCAAAAG\n-ATT\n->pyc_11\n-TACTATGCACCGTTTGAAAGTGGTATGAATGCGCCTCATACAGAGGTATATATGCATGAA\n-ATGCCAGGTGGACAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGA'..b'-TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGACTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n-ATT\n->pyc_196\n-TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n-ATGCCAGGCGGACAGTATAGTAATTTACAACAACAAGCGAAAGCGGTTGGTTTAGGGGAT\n-CGCTTCGATGAAGTAAAAGTAATGTATCGACGTGTGAATGACATGTTTGGTGACATCGTT\n-AAAGTAACGCCATCATCAAAAGTTGTTGGTGATATGGCATTATTTATGGTGCAAAATCAT\n-TTAACAGAACAAGATGTTTTAGAGCGTGGGCATTCTATGGACTTCCCGGGATCTGTTGTT\n-GAAATGTTCTCAGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAACAGTTACAAGAA\n-ATT\n->pyc_197\n-TACTATGCGCCATTTGAAAGTGGTATGAACGCTCCTCACACAGAGGTGTATATGCACGAA\n-ATGCCAGGTGGACAGTATAGTAATCTTCAACAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n-CGTTTTGATGAAGTTAAAGTAATGTACCGTCGTGTTAATGACATGTTTGGAGATATTGTA\n-AAAGTAACACCGTCATCTAAAGTTGTTGGTGATATGGCATTATTTATGGTTCAAAATCAT\n-CTGACAGAACAAGATATTTTAGAGCGTGGACATTCTATGGACTTCCCGGGATCTGTTGTT\n-GAAATGTTCTCTGGAGATTTAGGTCAACCATATGGTGGTTTCCCGAAAGAATTACAAAAA\n-ATT\n->pyc_198\n-TACTATGCACCGTTTGAAAGTGGTATGAATGCACCTCACACAGAGGTATATATGCATGAA\n-ATGCCAGGTGGACAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n-CGCTTTGATGAAGTGAAAGTAATGTACCGTCGTGTGAATGACATGTTTGGAGATATTGTA\n-AAAGTAACACCGTCATCAAAAGTTGTTGGTGATATGGCGTTATTTATGGTTCAAAACCAC\n-CTGACAGAACAAGATGTTTTAGAGCGTGGACATGCTTTGGACTTCCCTGGATCTGTTGTT\n-GAAATGTTCTCTGGTGATTTAGGTCAACCGTACGGTGGTTTCCCGAAAGAATTGCAAAAG\n-ATT\n->pyc_199\n-TACTACGCACCGTTTGAAAGTGGTATGAATGCTCCTCATACAGAGGTATATATGCACGAA\n-ATGCCAGGCGGACAGTATAGCAATTTACAACAACAAGCGAAAGCGGTTGGCTTAGGAGAT\n-CGTTTTGATGAAGTGAAAGTAATGTACCGCCGTGTGAATGACATGTTTGGTGATATTGTT\n-AAAGTAACGCCATCATCTAAAGTTGTTGGTGATATGGCATTATTTATGGTTCAAAATCAC\n-TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGACTTAGGACAACCGTATGGTGGTTTCCCGAAAAAGTTACAAGAA\n-ATT\n->pyc_200\n-TACTACGCACCGTTTGAAAGTGGTATGAACGCTCCTCATACAGAGGTATATATGCACGAA\n-ATGCCAGGCGGACAGTACAGTAATTTACAACAACAAGCGAAAGCGGTCGGCTTAGGCGAT\n-CGCTTCGATGAAGTGAAAGTAATGTATCGCCGTGTGAATGATATGTTTGGTGATATTGTT\n-AAAGTAACGCCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAACCAC\n-TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGTGACTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n-ATT\n->pyc_201\n-TACTACGCACCGTTTGAAAGTGGTATGAACGCTCCTCATACAGAGGTATATATGCACGAA\n-ATGCCAGGCGGACAGTACAGTAATTTACAACAACAAGCGAAAGCGGTTGGCTTAAGAGAT\n-CGCTTCGATGAAGTGAAAGTAATGTATCGCCGTGTGAATGATATGTTTGGTGATATTGTT\n-AAAGTAACGCCATCATCTAAAGTTGTCGGTGATATGGCATTATTCATGGTTCAAAATCAC\n-TTAACAGAACAAGATGTTTTAGAGCGTGGACATTCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGACTTAGGACAACCATATGGTGGTTTCCCGAAAAAGTTACAAGAA\n-ATT\n->pyc_202\n-TACTATGCTCCATTTGAAAGTGGTATGAACGCTCCCCATACAGAGGTATATATGCACGAA\n-ATGCCGGGCGGACAGTATAGTAATCTTCAACAACAAGCGAAAGCGGTTGGCTTAGGAGAT\n-CGCTTTGATGAAGTTAAAGTGATGTATCGCCGTGTTAATGATATGTTTGGCGATATTGTA\n-AAAGTAACACCATCATCTAAAGTTGTGGGTGATATGGCATTATTTATGGTTCAAAATCAT\n-CTGACAGAACAAGATATTTTAGAACGTGGACATGCTATGGACTTCCCGGGATCTGTTGTT\n-GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAGAATTACAAAAA\n-ATT\n->pyc_203\n-TACTATGCTCCATTTGAAAGTGGTATGAACGCTCCTCATACAGAGGTATATATGCACGAA\n-ATGCCAGGCGGACAGTATAGTAATCTTCAACAACAAGCGAAAGCTGTTGGCTTAGGAGAT\n-CGCTTTGATGAAGTTAAAGTGATGTATCGTCGTGTTAATGATATGTTTGGCGATATTGTA\n-AAAGTAACACCATCATCTAAAGTTGTCGGTGATATGGCATTATTTATGGTTCAAAATCAT\n-CTGACAGAGCAAGATATTTTAGAACGTGGACATGCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGATTTAGGTCAACCATATGGTGGTTTCCCGAAAGAATTACAAAAT\n-ATT\n->pyc_204\n-TACTATGTACCGTTTGAAAGTGGTATGAATGCACCTCACACAGAGGTATATATGCACGAA\n-ATGCCGGGTGGGCAGTATAGTAATCTTCAGCAACAAGCGAAGGCGGTTGGTTTAGGAGAT\n-CGCTTCGATGAAGTGAAAGTAATGTACCGTCGTGTGAATGACATGTTTGGAGACATTGTA\n-AAAGTAACGCCATCTTCAAAAGTTGTTGGTGATATGGCATTATTTATGGTTCAAAACCAT\n-TTGACAGAACAAGATATTTTAGAGCGTGGACATGCTTTGGATTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGTGATTTAGGTCAACCGTACGGTGGTTTCCCGAAAGAATTACAAAAG\n-ATT\n->pyc_205\n-TATTATGCTCCATTTGAAAGTGGTATGAATGCTCCTCACACAGAGGTATATATGCATGAA\n-ATGCCGGGTGGACAGTATAGTAATCTTCAACAACAAGCAAAAGCGGTTGGCTTAGGAGAT\n-CGCTTTGATGAAGTTAAAGTGATGTATCGCCGTGTTAATGATATGTTTGGTGATATTGTA\n-AAAGTAACACCATCATCTAAAGTTGTCGGTGATATGGCATTATTTATGGTTCAAAATCAC\n-CTAACAGAACAAGATATTTTAGAACGCGGACATGCTATGGACTTCCCAGGATCTGTTGTT\n-GAAATGTTCTCTGGAGATTTAGGACAACCATATGGTGGTTTCCCGAAAGAATTACAAAAA\n-ATT\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_mlst_db/tpi.fas --- a/btyper-2.0.3/seq_mlst_db/tpi.fas Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1899 +0,0 @@\n->tpi_1\n-GAGTCAGTAAACAAAAAGACTATTGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGTTGTTTCTCCAGCTGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_2\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACTGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGCTGCTGCAGAAGCTGTT\n-CGTATTCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGAGGCGGTAAAA\n->tpi_3\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACTGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAGGCTGTTTCTCCAGCTGCTGCAGAAGCTGTT\n-CGTATTCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGAGGCGGTAAAA\n->tpi_4\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACTGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGCTGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_5\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTAACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_6\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTAACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAATGAAGTA\n-TGTGCGCATATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_7\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_8\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGACCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_9\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAGGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCA'..b'GCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAATGAAGTA\n-TGTGCGCATATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n-GACATCGATGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_204\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCCTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCAGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_205\n-GAATCAGTAAACAAAAAGACTCTAGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCTATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAATGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATTCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGTACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_206\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGTGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_207\n-GAATCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACGCCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_208\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTAAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_209\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATGTGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_210\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGATCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTTCTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCATATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGCGGCTGCAGAAGCTGTT\n-CGTATTCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTACATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n->tpi_211\n-GAGTCAGTAAACAAAAAGACTATCGCAGCATTTGAACATGGTTTAACACCAATCGTATGT\n-TGTGGTGAGACTTTAGAAGAGCGCGAAAGCGGAAAAACATTTGACCTAGTAGCAGGTCAA\n-GTGACAAAAGCACTTGCAGGTTTAACAGAAGAGCAAGTTAAAGCAACTGTTATCGCTTAT\n-GAGCCAATCTGGGCTATCGGTACAGGTAAATCTACTTCTTCTGCAGATGCAAACGAAGTA\n-TGTGCGCACATCCGTAAAGTTGTTGCAGAAGCTGTTTCTCCAGAAGCTGCAGAAGCTGTT\n-CGTATCCAATACGGCGGTAGCGTAAAACCAGAAAACATTAAAGAGTATATGGCACAATCT\n-GACATCGACGGCGCTTTAGTTGGCGGTGCTAGCTTAGAGCCTGCTTCGTTCTTAGGTCTT\n-CTGGGGGCGGTAAAA\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_panC_db/panC.fasta --- a/btyper-2.0.3/seq_panC_db/panC.fasta Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,90 +0,0 @@\n->clade3___B_cereus_ATCC_4342\n-ATGAAAATCGTAACTACAGTACAAGAGATGCAGCAAATTACAAATGAAATTCGTACAAGTGGAAAAAGTATTGGCTTTGTCCCAACGATGGGCTATTTGCATGAAGGTCATGCGACTTTATTACGTCAGGCAAGAGAAGAAAATGAAATTGTAGTGTTAAGCGTGTTTGTTAATCCGCTACAGTTTGGACCGAATGAAGATTTAGATCGATACCCTCGTGATATTAATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGCGTGGAAGAAATGTATCCATCAGAACAAACGACAACAGTTGAAGTTGTAAAGCGTACCGATGTATTATGTGGCAAACAAAGACCTGGTCATTTTGCTGGTGTTGCGACTGTACTAATGAAACTATTTAATATTACATTACCAACGCGTGCTTATTTCGGTATGAAAGACGCACAGCAAGTTGCTGTCATTGAAGGATTTGTTGCTGATTTTAATATTCCGGTTACAATCGTACCAGTAGATATTGTAAGGGAAGAAGATGGATTAGCGAAAAGTTCTCGTAACGTGTATTTATCACAAGCAGAGCGTAAAGAGGCTCCTCATTTATACCGTAGCCTATGTGTAGCGAAAGACAGAATTGAGGCAGGCGAACGGAATGCAGAAATCATTACAACACTTGTGAAAGAGTATATTGAGACGCATACGCAAGGCACTGTAGATTATGCTGATTTATATGCATATCCTTCACTACAAGTAATGGATAAAATTGAAGGGCGAATCATTTTAGCAATCGCAGTTAAATTTGAAAATGTACGATTAATTGACAATATAACAGTAACGGTTAAATAA\n->clade3___B_cereus_F\n-ATGAAAATCGTAACTACAGTACAAGAGATGCAGCAAATTACAAACGAACTACGTGCAAGTGGAAAAAGTATTGGTTTTGTCCCAACGATGGGTTATTTACATGAAGGTCATGCGACTTTATTACGTAAGGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGCGTGTTTGTTAATCCGCTACAGTTTGGACCAAATGAAGATTTAGATCGATACCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGCGTAGAAGAAATGTATCCAGCAGAACAAACGACAACAGTAGAAGTTGTGAAGCGTACCGATGTGTTATGCGGAAAGCAAAGACCTGGTCATTTCGCTGGTGTTGCGACTGTACTAATGAAACTATTTAATATTACATTGCCAACACGTGCTTATTTCGGTATGAAAGATGCACAGCAAGTTGCTGTCATTGAAGGATTTGTCGCTGATTTTAATATTCCGGTTACAATCGTACCGGTGGATATTGTAAGGGAAGAAGATGGATTAGCGAAAAGTTCTCGTAACGTGTATTTGTCACAAGAAGAGCGTGAAGAGGCTCCTCATTTATACCGCAGTCTATGTATAGCGAAAGAAAGAATTGAGGCAGGAGAACGTAATGCAGAAATCATTACAACTCTTGTGAAAGAGTATATTGAGACGTATACGAAAGGCACTGTAGATTATGCTGATTTATATACGTATCCTTCACTACAAGTAGTGGATAAAATTGAAGGACGAATCATTTTAGCAATTGCAGTTAAATTTGACAATGTACGATTAATTGACAATATAACATTAACGGTTAAATAA\n->clade4___B_thuringiensis_T13001\n-ATGAAAATCGTAACTACAGTGCAAGAGATGCAGCAAATTACAAGCGAACTTCGTGCAAGTGGAAAGAGTATTGGTTTTGTTCCAACAATGGGTTATTTACATGAAGGCCATGCTACTTTATTACGTAAGGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGTGTATTTGTAAACCCACTACAATTCGGCCCAAATGAAGATTTAGATCGATATCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGTGTAGAAGAAATGTATCCAGCAGAACAAACAACAACAGTAGAAGTTGTGAAGCGCACGGACGTATTATGCGGTCAACAAAGACCTGGTCATTTCGCTGGTGTTGCAACTGTACTGATGAAACTATTTAATATTACGGTGCCAACGCGTGCTTATTTCGGTATGAAAGATGCTCAACAAGTTGCAGTAATTGAAGGATTTGTAACTGATTTCAATATTCCAGTTACAATCGTACCAGTTGATATTGTAAGGGAAGAAGATGGTTTAGCGAAAAGTTCTCGTAACGTGTACCTATCACAAGATGAACGTGAAGAAGCTCTTCATTTATACCGCAGCCTATGTATAGCGAAAGAAAGAATTGAGGCAGGTGAACGTAATCCGGAAATCATTACAAATCTTGTGAAAGATTATATTGAGACGCATACGAAAGGCACTGTAGATTATGCGGATTTATATGCATATCCGTCATTAACAATGGTAGAGAAAGTCGAAGGAAGAATCATTTTAGCTATTGCAGTTAAGTTTGAAAATGTAAGATTAATTGACAATATAACATTAACGGTTAAATAA\n->clade6___B_weihenstephanensis_KBAB4\n-ATGAAAATCATAACTACAGTGCAAGAGATGCAGCAAATTACAAACGAACTGCATGCAAGTGGAAAAAGTATCGGTTTTGTTCCAACGATGGGGTATTTACACGAAGGGCATGCTACGTTACTACGTAAGGCAAGGGAAGAAAATGAAATTGTAGTTTTAAGTGTATTTGTAAATCCACTACAATTTGGACCAAATGAAGATTTAGATCGATACCCACGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAATGGTGTTGATTATTTATTTTATCCGAGTGTAGAAGAGATGTATCCAGCAGAACAAACGACAACAGTAGAAGTTGTGAAGCGTACCGACGTATTATGTGGCAAACAAAGACCTGGTCATTTCGCTGGTGTTGCGACTGTACTAATGAAACTATTTAATATTACATTGCCAACGCGTGCTTATTTCGGTATGAAAGATGCACAGCAAGTAGCTGTAATTGAAGGATTCGTAACTGATTTTAATATTCCCGTTACGATCGTACCAGTTGATATTGTAAGGGAAGAAGATGGATTAGCGAAAAGTTCTCGTAATGTGTATTTATCACTAGAAGAACGTGAAGAGGCTCCTCATTTATACGGCAGTCTATGTATAGCGAAAGAACGAATTGAGGCAGGCGAACGTAATCCGGAAATCATTATGAATCTTGTGAAAGAGCATATTGAGAAGTATACGAAAGGCACTGTAGATTATGCTGATTTATATGCATATCCTTCATTAAAAGCAATAAATAAAATTGAAGGAAGAATCATTTTAGCGATTGCAGTTAAGTTTGAAAATGTACGATTAATTGACAATATAACATTAATGGGGAAATAA\n->clade3___B_cereus_03BB87\n-ATGAAAATCGTAACTACAGTGCAAGAGATGCAGCAAATTACAAACGAACTGCGTGCAAGTGGAAAAAGTATTGGTTTTGTTCCAACGATGGGCTATTTACATGAAGGTCATGCGACTTTATTACGTAAAGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGCGTGTTTGTCAATCCGTTACAGTTTGGACCGAATGAAGATTTAGATCGATACCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGCGTAGAAGAAATGTATCCAGCAGAACAAACGACAACAGTAGCAGTTGTGAAGCGTACCGATGTATTATGTGGCAAACAAAGACCTGGTCATTTCGCTGGTGTTGCGACTGTACTAATGAAACTATTTAACATTGCATTGCCAACG'..b'TATTTAACATTACATTGCCAACACGCGCGTATTTCGGTATGAAAGATGCACAGCAAGTTGCTGTCATTGAAGGATTTGTCGCTGATTTTAATATTCCGGTTATAATCGTACCGGTGGATATTGTAAGGGAAGAAGATGGATTAGCGAAAAGTTCTCGTAACGTGTATTTATCACAAAAAGAGCGTAAAGAGGCTCCTCATTTATACCGCAGTCTATGTATGGCAAAAGAAAGAATTGAGGCAGGAGAACGGAATGCAGAAATTATTACAACTCTTGTAAAAGAATATATTGAGACGTATACGAAAGGCACTGTAGATTATGCGGATTTATATGCCTACCCTTCACTACAAGTAGTGGATCAAATTGAAGGGCGAATCATTTTAGCAATTGCAGTTAAATTTGAAAATGTACGATTAATTGACAATATAACATTAACGGTTAAATAA\n->clade4___B_cereus_B4264\n-ATGAAAATCGTAACTACAGTGCAAGAGATGCAGCAAATTACTAGCGAACTTCGTGCAAGTGGAAAGAGTATTGGTTTTGTTCCAACAATGGGTTATTTACATGAAGGCCATGCTACTTTATTACGTAAGGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGTGTATTTGTAAACCCACTACAATTCGGCCCAAATGAAGATTTAGATCGATATCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGTGTAGAAGAAATGTATCCAGCAGAACAAACAACAACAGTAGAAGTTGTGAAGCGCACGGACGTATTATGCGGTCAACAAAGACCTGGTCATTTCGCTGGTGTTGCAACTGTACTGATGAAACTATTTAATATTACGGTGCCAACGCGTGCTTATTTCGGTATGAAAGATGCTCAACAAGTTGCAGTAATTGAAGGATTTGTAACTGATTTCAATATTCCAGTTACAATCGTACCAGTTGATATTGTAAGGGAAGAAGATGGTTTAGCGAAAAGTTCTCGTAACGTGTACCTATCACAAGATGAACGTGAAGAAGCTCTTCATTTATACCGCAGCCTATGTATAGCGAAAGAAAGAATTGAGGCAGGTGAACGTAATCCGGAAATCATTACAAATCTTGTGAAAGATTATATTGAGACGCATACGAAAGGCACTGTAGATTATGCGGATTTATATGCATATCCGTCATTAACAATGGTAGAGAAAGTCGAAGGAAGAATCATTTTAGCTATTGCAGTTAAGTTTGAAAATGTAAGATTAATTGACAATATAACATTAACGGTTAAATAA\n->clade3___B_thuringiensis_YBT_020\n-ATGAAAATCATAAATACAGTGCAAGAGATGCAGCAAATTACAAACGAACTACGTGCAAGTGGAAAAAGTATTGGTTTTGTCCCAACGATGGGTTATTTACATGAAGGTCATGCGACTTTATTACGTAAGGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGCGTGTTTGTTAATCCGCTACAGTTTGGACCAAATGAAGATTTAGATCGATACCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGCGTAGAAGAAATGTATCCAGCAGAACAAACGACAACAGTAGAAGTTGTGAAGCGTACCGATGTGTTATGCGGAAAACAAAGACCTGGTCATTTCGCTGGTGTTGCGATTGTACTAATGAAACTATTTAATATTACATTGCCAACACGTGCTTATTTCGGTATGAAAGATGCACAGCAAGTTGCTGTCATTGAAGGATTTGTCGCTGATTTTAATATTCCGGTTACAATCGTACCGGTGGATATTGTAAGGGAAGAAGATGGATTAGCCAAAAGTTCTCGTAACGTGTATTTATCACCAGAAGAGCGTGAAGAGGCTCCTCATTTATACCGCAGTCTATGTATAGCGAAAGAAAGAATTGAGACAGGAGAACGTAATGCAGAAATCATTACAACTCTTGTGAAAGAGTATATTGAGACGTATACGAAAGGCACTGTAGATTATGCTGATTTATATACGTATCCTTCACTACAAGTAGTGGATAAAATTGAAGGACGAATCATTTTAGCAATTGCAGTTAAATTTGACAATGTACGATTAATTGACAATATAACATTAACGGTTAAATAA\n->clade1___B_pseudomycoides_DSM_12442_contig00069\n-ATGAAAATTGTAACAACAGTGCAAGAGATGCAGCAAATTGCTAGTGAAATTCGTGCAAGTGGTAAAGATAGCGGTTTTGTTCCAACGATGGGATATTTACACGAAGGGCATGCAACTTTATTACGTCAAGCAAGGGAAGAAAATGAAGTTGTTATTTTAAGCGTATTTGTAAACCCATTACAATTTGGACCAAATGAAGATTTAGATCGCTATCCTCGGGATATCGAGAGAGATGAGAAAGTAGCAAAAGAAGCCGGGGTGGATTATTTATTTTATCCGAGCGTAGAAGAAATGTATCCTGCAGAACAGACAACAAAGGTTGCAGTTATAAAGCGTACAGACGTATTATGTGGTAAGCAAAGACCGATTCATTTTGCAGGTGTTGCGACTGTATTGATGAAACTATTTAATATTACAATGCCAAAGCGTGCCTACTTCGGTATGAAAGATGCACAGCAAGTCGCTGTTATCCAAGGATTTGTACGTGATTTCAATATTCCAATCACAATTGTACCTGTTGATATCGTTAGGGAAGAGGACGGATTAGCAAGAAGTTCTCGTAATGTATATTTATCAGAAAAAGAACGTGAGGAAGCACCACATTTATATCAAAGCTTATGTATAGCGAAAAAACGAATTGAAGCTGGAGAGCGTAATCCACAAATCATTACATGTCTTGTGAAAGAATATATTGAGGAAAATACACAAGGTATCGTCGATTATGCAGATCTATATGCGTACCCAACTTTGACGGAAGTTGAAACAATTGGTGGGCGTATTATTCTTGCAATTGCAGTGAAGTTTGATAATGCACGTTTAATTGACAATATTACATTAACGGTTGAATAA\n->clade2___B_wiedmannii_FSL_W8_0169\n-ATGAAAATCGTAACTACAGTACAAGAGATGCAGCAAATTACAAACGAACTTCGTATAAGTGGAAAAAGTATTGGTTTTGTTCCAACGATGGGGTATTTACATGAAGGTCATGCGACTTTATTACGTAAGGCAAGAGAAGAAAATGAAATTGTAGTTTTAAGCGTGTTTGTCAATCCGCTACAGTTTGGGCCGAATGAAGATTTAGATCGATACCCTCGTGATATTGATAGAGATGAAAATGTAGCAAAAGAAAACGGTGTAGATTATTTATTTTATCCGAGCGTAGAAGAAATGTATCCAGCGGAACAAACGACAACAGTAGCAGTTGTGAAACGTACCGATGTATTATGTGGCAAACAAAGACCTGGTCATTTCGCTGGAGTTGCGACTGTACTAATGAAACTATTTAATATTACATTGCCAACGCGTGCTTATTTCGGTATGAAAGATGCACAGCAAGTTGCTGTCATTGAAGGATTTGTCGCTGATTTTAATATTCCGGTTACGATCGTACCAGTGGATATTGTAAGGGAAGTAGATGGATTAGCGAAAAGTTCTCGTAACGTGTATTTATCACAAGAAGAGCGTGAAGAGGCTCCTCATTTATACCGCAGTCTATGTAAAGCGAAAGAAAGAATTGAAGCAGGCGAATGTAATGCAGAAATCATTACAACTCTTGTGAAAGAGTATATTGAGACGTATACGAAAGGCACTGTAGATTATGCTGATTTATATGCCTATCCTTCACTA-CAAGTAATAGATAAAATTGAAGGACGAATGATTTTAGCAATTGCAGTTAAATTTGAGAATGTACGATTAATTGACAATATAACATTAACGGTTAAATAA\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_rpoB_db/rpobdatabase08122015.fa --- a/btyper-2.0.3/seq_rpoB_db/rpobdatabase08122015.fa Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,1164 +0,0 @@\n->rpoB|AT0001|F40073|Bacillus|licheniformis\n-GCTCTTCGCAATCTCGATGAACGCGGAATTATCCGTGTCGGTGCTGAAGTAAAAGACGGAGATCTTCTTGTTGGTAAAGTAACCCCTAAAGGTGTTACAGAGCTTACGGCGGAAGAACGCCTGCTTCATGCCATCTTCGGGGAAAAAGCGCGTGAAGTGCGTGATACGTCGCTGCGTGTACCTCACGGAGGCGGCGGTATCATCCTTGATGTAAAAGTGTTCAACCGCGAAGACGGAGACGAACTGCCTCCGGGCGTTAACCAGCTCGTCCGCGTCTACATCGTTCAGAAGCGTAAAATTTCTGAAGGGGACAAAATGGCCGGACGCCACGGTAACAAAGGTGTTATTTCGAAAATTCTTCCGGAGGAAGATATGCCGTATCTGCCTGACGGAACGCCGATTGACATCATGTTAAACCCGCTGGGCGTACCATCGCGTATGAACATCGGGCAGGTGTTGGAGCTGCACCTTGGTATGGCTGCACGCCGCCTCGGTCTGCATGTCGCGTCACCTGTATTTGACGGTGCCCGCGAAGAAGATGTGTGGGAAACCCTTGAAGAAGCCGGCATGTCAAGAGACGCAAAAACCGTCCTTTACGACGGCCGAACTGGGGAGCCGTTTGACAACCGGGT\n->rpoB|AT0002|F40077|Paenibacillus|odorifer\n-GCTCTGCGCAATCTTGATGAGCGCGGAATCATCCGCATCGGTGCGGAAATCAGCGCTGGTGACATTCTGGTGGGTAAGGTTACTCCTAAGGGTGTAACTGAACTGACAGCAGAAGAACGTCTCCTGCACGCTATCTTTGGTGAGAAAGCTCGTGAAGTACGGGATACCTCTTTACGCGTTCCTCATGGTAGTGATGGTATTATCGTGGACGTTAAAGTCTTTACACGTGAGAACGGCGATGAGCTGCCTCCTGGTGTAAATCAATTGGTTCGTGTCTACATCGCTCAGAAACGTAAGATCTCTGAGGGAGACAAGATGGCCGGACGTCACGGTAACAAGGGTGTCGTTGCCCGTATCCTGCCAGAAGAAGATATGCCGTTCCTTCCGGACGGTACGCCAGTACAGGTTGTTCTTAACCCTCTGGGCGTTCCTTCTCGTATGAACATCGGACAGGTGCTTGAGGTCCATATTGGTATGGCCGCATTGCGTCTGGGAATTCACATTGCAACGCCGGTATTCGACGGAGCGCGTGAGTACGACGTGTTTGATACGATGGAAGAAGCAGGTATGCAGCGTAATGGTAAAACCGTGCTGTATGATGGCCGTACAGGTGAACGCTTCGAACGTGAAGT\n->rpoB|AT0003|F40079|Bacillus|weihenstephanensis\n-GCACTTCGTAATCTTGACGAGCGCGGTATTATTCGCGTCGGTGCTGAAGTAAAAGATGGAGATCTACTTGTTGGTAAAGTAACGCCAAAAGGTGTAACAGAATTAACGGCAGAAGAACGTCTATTACATGCAATCTTCGGTGAAAAAGCACGTGAAGTACGTGATACATCACTACGTGTACCACACGGTGGTGGCGGTATTATCTTAGACGTAAAAGTGTTTAACCGTGAAGATGGCGATGAATTGCCACCAGGCGTGAATCAACTTGTACGTGCATATATCGTTCAAAAGCGTAAAATTTCTGAAGGTGACAAAATGGCCGGTCGTCATGGTAACAAAGGTGTTATCTCCCGTATTTTACCGGAAGAAGATATGCCTTACTTACCAGATGGTACGCCAATCGATATCATGTTAAACCCATTAGGGGTACCATCTCGTATGAATATCGGTCAGGTATTAGAGCTTCATCTTGGTATGGCAGCAAGATACCTTGGTATTCACATTGCAACACCGGTATTCGATGGTGCTCGTGAGGAAGATGTATGGGGCACAATTGAAGAAGCTGGTATGGCAAATGACGCGAAAACAATCCTGTATGACGGACGTACTGGTGAGCCATTCGATAACCGTGT\n->rpoB|AT0004|F40085|Paenibacillus|odorifer\n-GCTCTGCGCAATCTTGATGAGCGCGGAATCATCCGCATCGGTGCGGAAATCAGCGCTGGTGACATTCTGGTGGGTAAGGTTACTCCTAAGGGTGTAACTGAACTGACAGCAGAAGAACGTCTCCTGCACGCTATCTTTGGTGAGAAAGCTCGTGAAGTACGGGATACCTCTTTACGCGTTCCTCATGGTAGTGATGGTATTATCGTGGACGTTAAAGTCTTTACACGTGAGAACGGCGATGAGCTGCCTCCTGGTGTAAATCAATTGGTTCGTGTCTACATCGCTCAGAAACGTAAGATCTCTGAGGGTGACAAGATGGCCGGACGTCACGGTAACAAGGGTGTCGTTGCCCGTATCCTGCCAGAAGAAGATATGCCGTTCCTTCCGGACGGTACGCCAGTACAGGTTGTTCTTAACCCTCTGGGCGTTCCTTCTCGTATGAACATCGGACAGGTGCTCGAGGTCCATATTGGTATGGCCGCATTGCGTCTGGGAATTCACATTGCAACGCCGGTATTTGACGGAGCACGTGAGTACGACGTGTTTGATACGATGGAAGAAGCAGGTATGCAGCGTAATGGTAAAACTGTGCTGTATGATGGCCGTACAGGTGAACGCTTCGAACGTGAAGT\n->rpoB|AT0005|F40087|Paenibacillus|sp\n-GCGCTTCGTAATCTGGATGAGCGCGGTATTATCCGTATCGGTGCTGAAATCAGTGCTGGCGACATTCTGGTTGGTAAAGTAACACCAAAAGGTGTAACGGAACTGACTGCAGAAGAACGTCTCCTGCATGCGATCTTCGGTGAGAAAGCACGTGAAGTACGTGATACTTCCCTGCGTGTACCTCACGGTACTGACGGTATCGTAGTTGATGTAAAAGTCTTTACCCGTGAAAACGGTGATGAACTGCCTCCAGGTGTTAACCAACTCGTTCGTGTCTATATCGCTCAAAAACGGAAAATTTCCGAGGGTGATAAAATGGCCGGACGTCACGGTAACAAAGGGGTCGTGGCCCGTATCCTGCCGGAAGAAGATATGCCTTTCCTGCCGGACGGTACACCAGTTCAAATCGTTCTTAACCCGCTGGGCGTACCTTCCCGGATGAACATTGGTCAAGTACTTGAAGTTCACTTGGGTATGGCAGCCATGCAGCTCGGTATTCACGTAGCTACTCCTGTATTCGACGGAGCGAAGGAGTATGACGTCTTCGATACGATGGAAGAAGCAGGTATGCAGCGAAATGGTAAAACCGTTCTGTACGACGGTCGTACGGGAGAAGAGTTCGAACGTGAAGT\n->rpoB|AT0006|F40096|Bacillus|licheniformis\n-GCTCTTCGCAATCTCGATGAACGCGGAATTATCCGTGTCGGTGCTGAAGTAAAAGACGGAGATCTTCTTGTTGGTAAAGTAACCCCTAAAGGTGTTACAGAGCTTACGGCGGAAGAACGCCTGCTTCATGCCATCTTCGGGGAAAAAGCGCGTGAAGTGCGTGATACGTCGCTGCGTGTACCTCACGGAGGCGGCGGTATCATCCATGATGTAAAAGTGTTCAACCGCGAAGACGGAGACGAACTGCCTCCGGGCGTTAACCAGCTCGTCCGCGTCTACATCGTTCAGAAGCGTAAAATTTCTGAAGGGGACAAAATGGCCGGACGCCACGGTAACAAAGGTGTTATTTCGAAAATTCTTCCGGAGGAAGATATGCCGTATCTGCCTGACGGAACGCCGATTGACATCATGTTAAACCCGCTGGGCGTACCATCGCGTATGAACATCGGGCAGGTGTTGGAGCTGCACCTTGGTATGGCTGCACGCCGCCTCGGTCTGCATGTCGCGTCACCTGTATTTGACGGTGCCCGCGAAGAAGATGTGTGG'..b'tropheus\n-GCGCTCCGCAATCTTGACGAACGCGGAATCATCCGTATCGGTGCTGAAGTGAATGACGGAGATCTTCTTGTAGGTAAAGTAACGCCAAAAGGTGTGACTGAACTTACAGCTGAAGAACGCCTGCTTCATGCCATCTTTGGTGAAAAAGCACGCGAGGTCCGTGACACGTCTCTTCGTGTGCCTCACGGCGGCGGCGGAATCATCCACGATGTGAAGGTCTTTAACCGTGAAGACGGTGACGAACTTCCTCCGGGTGTAAATCAGCTAGTACGTGTATATATCGTTCAGAAACGTAAAATTTCTGAAGGAGATAAAATGGCCGGTCGTCACGGTAACAAAGGTGTTATCTCTAAGATTCTTCCAGAAGAAGATATGCCTTACCTTCCTGACGGCACACCGATTGATATCATGCTTAACCCGCTTGGCGTACCATCACGTATGAACATCGGGCAAGTATTGGAGCTTCATATGGGAATGGCAGCTCGTTACCTAGGCATTCACATTGCTTCGCCGGTATTTGACGGAGCACGTGAAGAAGACGTGTGGGAAACACTTGAAGAAGCCGGAATGTCCAGAGACGCGAAGACTGTTCTTTACGACGGACGTACTGGAGAGCCGTTTGACAACCGTGT\n->rpoB|AT0581|K63431|Bacillus|cf|lentus\n-GCACTTCGTAACCTTGATGATCGTGGAATCATCCGTATAGGTGCTGAGGTTAGAGACGGCGATCTGCTTGTTGGAAAGGTAACGCCTAAAGGTGTTACAGAACTTACTGCGGAAGAGCGTCTGTTACACGCTATCTTTGGTGAAAAAGCGCGTGAAGTCCGTGATACATCGCTACGTGTTCCACACGGTGGTGGAGGTATCGTCCTTGACGTCAAAGTGTTCAACCGCGAAGATGGAGACGAACTCCCACCTGGAGTAAACCAACTTGTTCGTGTGTATATCGTACAAAAAAGGAAAATCTCCGAAGGGGATAAAATGGCGGGACGTCACGGAAACAAAGGTGTAATTTCGAAAATACTTCCTGAGGAAGATATGCCGTATATGCCTGACGGAACTCCAGTGGACGTCATGTTGAATCCATTAGGTGTACCTTCTCGTATGAACATCGGTCAAGTGCTTGAAATGCATCTAGGTATGGCTGCAAGACATCTAGGGATTCATATGGCATCACCTGTATTTGATGGTGCTACGGAGGAAGATGTTTGGGAAACAATTGAAGAAGCAGGCATGGATCGTGATGCGAAAACAGTTCTTTATGATGGTCGTACTGGTGAGGCTTTTGATAACCGTGT\n->rpoB|AT0582|K63458|Bacillus|altitudinis\n-GCTTTACGCAACCTTGACGAGCGTGGAATCATCCGTATTGGTGCAGAAGTAAAAGACGGAGATCTTCTTGTCGGGAAAGTAACGCCTAAAGGTGTAACAGAACTAACAGCTGAAGAACGTCTATTACATGCAATCTTCGGTGAAAAGGCTCGTGAAGTACGTGATACGTCTCTACGTGTACCACACGGCGGCGGCGGAATCATCCACGATGTCAAAGTCTTTAACCGTGAAGATGGAGATGAATTACCACCAGGTGTTAACCAGTTAGTCCGTGTATACATCGTTCAGAAGCGTAAAATTTCTGAAGGTGACAAAATGGCCGGACGACATGGTAACAAAGGTGTTATCTCTAAAATCCTTCCAGAAGAAGATATGCCGTATCTTCCAGATGGAACACCGATTGATATCATGTTAAACCCTCTAGGGGTACCATCTCGTATGAATATCGGTCAGGTACTTGAGCTTCATATGGGTATGGCTGCACGTTACCTAGGCATCCACATTGCGTCACCAGTATTTGATGGTGCTCGTGAGGAAGATGTTTGGGAAACGCTTGAAGAAGCAGGTATGTCCCGTGATGCGAAAACAGTCCTTTATGACGGTCGAACTGGTGAACCATTCGATAACCGTGT\n->rpoB|AT0583|K60993|Bacillus|subtilis|sl\n-GCGCTTCGCAATCTTGATGACCGCGGAATCATCCGTATTGGGGCAGAAGTAAAAGACGGAGATCTTCTTGTTGGTAAAGTAACGCCTAAAGGCGTAACTGAACTGACTGCAGAAGAACGCCTTCTTCACGCCATCTTTGGCGAGAAAGCCCGCGAGGTTCGTGATACTTCTCTTCGTGTGCCTCATGGCGGCGGCGGAATTATCCATGACGTTAAAGTCTTCAACCGTGAAGACGGAGACGAACTTCCTCCAGGTGTTAACCAGTTAGTACGCGTATATATCGTTCAGAAACGTAAGATTTCTGAAGGGGATAAAATGGCCGGTCGTCACGGTAACAAAGGTGTTATCTCTAAGATTCTTCCTGAAGAAGATATGCCTTACCTTCCTGACGGCACACCAATTGATATCATGCTTAACCCGCTGGGCGTACCATCACGTATGAACATCGGGCAGGTATTGGAACTTCACATGGGTATGGCCGCTCGTTACCTTGGCATTCACATTGCATCTCCTGTATTTGACGGAGCGCGAGAAGAGGATGTCTGGGAAACACTTGAAGAAGCCGGCATGTCTCGTGACGCCAAAACAGTGCTTTACGACGGACGTACTGGAGAGCCGTTTGATAACCGTGT\n->rpoB|AT0584|K63200|TBD|\n-GCTTTACGCAACCTTGACGAGCGCGGAATCATCCGTATTGGTGCAGAAGTAAAAGACGGAGACCTTCTTGTAGGAAAAGTAACGCCTAAAGGTGTAACTGAACTAACAGCTGAAGAACGTCTATTACATGCAATCTTCGGTGAAAAGGCTCGTGAAGTTCGTGATACGTCACTGCGTGTTCCACACGGCGGCGGCGGAATTATCCACGATGTAAAAGTCTTTAACCGTGAAGATGGAGATGAATTACCTCCAGGTGTAAACCAGTTAGTCCGCGTATACATCGTTCAGAAGCGTAAGATTTCTGAAGGTGACAAAATGGCCGGACGACATGGTAACAAAGGGGTTATCTCTAAAATCCTTCCAGAAGAAGATATGCCTTATCTTCCAGACGGAACACCGATCGATATCATGTTGAACCCTCTAGGGGTACCATCTCGTATGAACATCGGTCAGGTACTTGAGCTTCATATGGGTATGGCTGCACGTTACCTTGGCATCCACATTGCGTCACCAGTATTTGATGGTGCGCGCGAGGAAGATGTTTGGGAAACGCTTGAAGAAGCAGGTATGTCCCGTGATGCGAAAACAGTCCTTTATGACGGTCGAACTGGTGAACCATTCGACAACCGTGT\n->rpoB|AT0585|K63255|Geobacillus|sp\n-GCGCTGAAAAACTTGGATGAGCGCGGCATTGTCCGCATTGGGGCGGAAGTAAAAGACGGCGACTTGCTCGTTGGTAAAGTGACGCCAAAAGGAATGACTGAGTTGACGGCCGAGGAGCGGCTGTTGCACGCGATTTTCGGTGAAAAAGCGCGCGAGGTGCGCGACACATCGTTGCGTGTCCCACACGGTGGCGGCGGCATTGTCCTCGATGTGAAAGTATTCAATCGCGAAGATGGTGACGAGCTCCCGCCAGGTGTCAACCAGCTTGTCCGCGTCTACATTGTGCAAAAACGGAAAATTTCCGAAGGTGACAAAATGGCGGGTCGTCACGGGAACAAAGGGGTTATTTCCCGCATTCTTCCGGAAGAAGATATGCCGTTCCTGCCAGACGGCACGCCGATCGATATCATGTTAAACCCGCTCGGCGTTCCGTCGCGGATGAACATCGGGCAAGTGTTTGAGCTGCATCTTGGTATGGCAGCCAAAAAGCTCGGTTTGCATATTGCTTCCCCGGTCTTTGACGGGGCAACGGAGGAAGATGTGTGGAACATTCTCGAAGAGGCTGGCATGGCTCGCGATGCAAAAACCGTGCTCTATGACGGCCGGACAGGGGAACCGTTTGACAACCGCGT\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_virulence_db/bc_virul_nt.fasta --- a/btyper-2.0.3/seq_virulence_db/bc_virul_nt.fasta Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| b'@@ -1,1008 +0,0 @@\n->1vir___atxA|gi|10956247|149232-149684 Bacillus anthracis virulence plasmid PX01, complete sequence atxA\n-TTAGTTATATTTCTTTTTTAGTTCATAATATGAATGAATATATTCTTTTTTTAATTTATAATAGGAATAT\n-ATCGTACTATAAATTAAATGATCAAAGAACAAATTTATCTGTTCAATTACCACTTTGCATTCTTGACCAG\n-TTGGATTCAAAAGGAATAATGTATTTAATATTTCTTTTTTTCCTTCATTGGTATTATATATAAAATCTGC\n-AATATTTACTTTTGCATCCATACGTTCTTGGGCAATTTTTTTTGAAATATCTTCAATGTCTTGTAAATTA\n-ATTTCTTCTCGCATATACATTGTGAATACATGAAGTAAATGCGTTCCATTTTTAATTATTTCATTTTTAT\n-AAGGATCATGTTCATGAACTAAAATACGTTTTTTCCAATTTGATATAAATTTCTCCTGGCTTTCTTTTAG\n-GTATAAACATAAGTATCGTTTTGTTGCTTCCAT\n-\n->2vir___bceT|gi|984573|1167-2267 Bacillus cereus bceT gene for diarrheal enterotoxin, complete cds bceT\n-ATGAAAGAGTTAGTTTCAACAGCGCGTATCGGTCGTTCACTCGGGATCCATTTAATATTAGCTACGCAAA\n-AACCGAGTGGTGTTGTAGATGATCAAATTTGGAGTAACTCGAAATTCAAACTAGCATTAAAAGTTCAAAA\n-TACGTCAGATAGTAATGAAATCTTAAAAACGCCAGATGCTGCTGAAATTACATTACCAGGACGTGCTTAC\n-TTACAAGTTGGGAATAATGAAATTTATGAACTATTCCAATCAGCTTGGAGCGGAGCAGACTATGTAGAAA\n-ACAAAGAGGATAAAGAACATTTAGACGCAACAATCTATGCAATAAATGATCTAGGACAATATGAAATATT\n-AAGTGAAGATTTAAGTGGCCTTGGTAGCAGTAAAGAAGTAATAAGCGTACCATCTGAACTGGATGCTGTT\n-ATTGACTACATTCACGATTACGCAGAAATAAATGAAATTGAAGCGTTAGCTAGACCGTGGTTACCACCAC\n-TTCCAGAAAGCGTATATTTACAAGACTTACATGCAATTCAGTTCAAAGAAGCATGGGCGAAAGAAAAGAA\n-ACCATTACAAGCAACAGTTGGTCTACTAGATCAGCCTGAATTACAATCACAAACACCATTAACATTAGAT\n-ATTAGTAAAGACGGACACGTAGCGGTCTTCTCAAGCCCAGGCTACGGAAAATCAACATTCTTACAATCAG\n-TCGTTATGGATGTAGCTCGTCAGCATAGTCCGGAGCATTTGCATGTGTATTTAGTGGACCTTGGAACAAA\n-TGGTCTTCTACCCTTGAAAGGATTACCTCATGTAGCGGATACGATTACGATTGATGAATCTGAAAAATGT\n-TTAAAGTTTGTTGAAAGATTAACTCAAGAAATGAAAAATCGTAAACGATTATTAAGTGAATATGACGTTG\n-CAAATATTGAAATGTATGAAAAGGCAAGCGGGAAAGAAATACCACATATTATTATTGCAATCGACAATTA\n-TGATGCAGTAAAAGAAGCGAAGTTCTATGAAAGCTTTGAAATGCTAATTATGCAAATTGTCCGAGATGGT\n-GCAAGTTTAGGAATTCTATTCTTCTATGTCTTCTTTTACTTCGGCGGATAA\n-\n->3vir___capA|gi|10956390|54378-55613 Bacillus anthracis plasmid pXO2, complete sequence capA\n-TCAAGTTGTTGTCTCCACTGATACTTGATTTTCTTTTTCTTGCTTATCTTGATGCTCTTGCTTTTCCCTC\n-TTTTTCATTTTTTCAATAACATGTTTATGATTTAATTTGATTTCCAATTTATCATCTTTTTTACTCCATA\n-GAGCACCCTTGGATGTATCTTTTGTTAATTGACGATACACACGATTTTTATCCAATGCACTGGTAACTGG\n-TTTTGGTGATCCCTCTTGAATATTTAAAGGTACAACATCAAGAATTGCAGTACCATTATCACGTAAATGA\n-TATTGCACAAGTGCACTATCTTTTGTTCTTGTCCATCCTTGGTCAAACACAAAGTTACCTAAACTATAGA\n-AGATAATCCCTTGCTTATACACATCAAAAGATTGAAGTACATGCGGATGGTGTCCCACAATAATATCTGC\n-CCCTGCATCAACCATTGCTTTTGCTAAGGCTTCCTGTCTAGGACTCGGTTTATTATCGTATTCTTCCCCC\n-CAGTGCGTATTTACTACGACAAGATCAGCATTACCTTTTTTAGGATCCTTTGCCTTACTAATTTGCTTAA\n-GTAATACATCTGGGTTCATACTTAACGAACCTGGTTGTTCTTTCGTTGCAATAGCTCCTGCTACAAATGC\n-ATCTGTAAATCCAAGAGTAGCAACCCTAACACCATTTACATTTTGATACACAATATTTTTTACATCTTTG\n-AAATTTTCACCAGCACCCACATAGTCAAGATCAGCTTCTTTAAAGGCCTTTATTGTATCTTTAGTTCCCT\n-TAGCACCATAATCCGTCATATGGTTATTCGCCAAATTTAATACTGTAAATCCGGCTTCTTTTACTGCCTT\n-AACTGTTTCTTCTTTTGCACTTAAGTGAATATTCTTATCTGCTTTTTGATAATTCTTTTTATCTTCTAAC\n-AAAACAGGATGTTCGAAATTCCCACTTACGTAATCTGAGTTTTTTAAATATGGCGAAACATGACGAAAAA\n-CATAATCTGTACCGTAACGATTAACAATCTCTTTTACGTGACGTCCCATCATAATGTCACCAACCATCGT\n-CATCGTCAATTTTTCGTTCTCACGATGTTTTACTGGTGCTACTGCTTCTGTACGTTGTACCCATGTCGCA\n-GCTATTAATATAACTGCGATAAGAGGTAATACGATTGCTACATAACGAGGATTTTTTTTCTTGGTTTTCT\n-TAATAAAGATCAGTAACTTTTCTTGAAATGTCAATTTTCGTCTCAT\n-\n->4vir___capB|gi|10956390|56089-57483 Bacillus anthracis plasmid pXO2, complete sequence capB\n-TTAAATCACTTTTGCTTGCTTTTTGCCAATTTGTTCTTCCATAATCATATCGATTAATGGCTCAGCTGCA\n-CCATGAATATTACCCACTCCATATACAATCCGATTTTTTAAATATGGACGCATACGAGACATAATTTCAC\n-TTGTTGACCAGCCTTCTAAGTTCCAATACTCTTGCGTTGGAATATCTCCTTTTTCAAAAGCACTTGTAAT\n-AGGTGCAGTCGTTTCTCCAATCGCAATAACTATTTCCGCTTTAATATATGGCAAAACATCCCTAGCAAAC\n-TGCTCAGTACGATCAACGCGGTCAGGGCGGCAATTCATAATTACAATTGGAGCTAGATTACTATATCCAA\n-AATCATCCACACGTTCCCAAATACGTAATGTTGATGAGGGATCATTCGCTGCAAAACCATTTACGAAGAA\n-CGCAGGCTTAGATTGGTCAGCAAAACGTGTAATTCTCATTGCTCCTGGATCCGGATGAGCATTCAACATA\n-CCACGGAATGCTGTTTCCTCATCAATCCCAAGAGCCTCTGCTACCGCTAAAGCAAGCGATGCATTATCTG\n-GGAAGACCATGTAATCAAATTTTCGTAAGAATTCTTCTGAAATTCTAGAATTATCCGCAACAATCACTTT\n-TGTATTTCTCTCTTCTGCAACCTCTTTAAAGTAATCCAAGTATTCACTTTCAAT'..b'TATAAAAAATCGGTCAGTAATGAACGATTTGAAAATTATCATTAAAACATTCAAGATAATTTTTTCACCTAATAGTGCATATTGA\n->41vir___bpsE|NC13_RS05315|BCE_G9241_pBC218_0064|Bacillus cereus exo-polysaccharide operon gene E UTP--glucose-1-phosphate uridylyltransferase [plasmid pBC218] [Bacillus cereus str. G9241]\n-GTGAAAAAAATAAAAAAAGCGATTATTCCAGCAGCAGGACTTGGTACTAGATTTTTACCAGCTACGAAGGCCATGCCTAAAGAAATGCTACCTATCGTCGATAAACCGACAATTCAATACATAGTAGAAGAGGCAATAGAGTCTGGAATTGAAGATATTATTATTGTTACTGGAAAAGGAAAGCGTGCAATTGAAGATCATTTTGATCATTCTTTTGAGTTAGAAAAAAAATTACTAGAAAAAGGAAAGCATGAAGTGCTTGAGAAAGTACAAGCTTCTTCAAAAATTAATATTCATTACATAAGACAAAAAGAGCCAAAAGGGCTTGGGCATGCAGTGTGGTGTGCACGTAAATTCATCGGAAACGAGCCATTTGCGGTATTACTTGGTGATGATATTGTACAAGCTGAAACACCATGTTTACGTCAATTAATGGATGAATATGAAGGAACACAATCAGCTGTAATTGGCGTACAAAAGGTACCAGAAAATGAAGTACATCGCTACGGTATCATTGATCCAGTTGAACAAAATGATCGTCGTTATCAAGTACGTCAATTTGTAGAAAAGCCAGCAGAAGGAACAGCGCCATCAAACTTAGCAATTATGGGACGTTACGTATTAACACCAGAAATCTTTATGTTTCTTGAGAATCAACAAACAGGTGCTGGTGGAGAGATTCAATTAACGGATGCGATTCAACGATTGAATGAAATTCAAAGCGTGTTTGCTTATGATTTTGAAGGAACTCGTTTTGATGTTGGAGAAAAACTAGGGTTTATTAAGACAACGATTGAAATGGCATTGCAGGATAAAGGTATTCAAGAGGAACTATTAAATCATATGGAGTGGTTATTAAAAAGTGAATCTTCTAGGGAGTACAAGTAA\n->42vir___bpsF|NC13_RS0532|BCE_G9241_pBC218_0065|Bacillus cereus exo-polysaccharide operon gene F tyrosine protein kinase [plasmid pBC218] [Bacillus cereus str. G9241]\n-ATGCAGAGTGTTATTACAAAAACAGACCCCCAATCACCTATCTCAGAACAATATCGAATAGTTAGAACAAATATTTCATTTTTATGTATTAATAATACAATCCGATCCCTAATAGTTACTTCTCCTGAAGCGGGAGAAGGGAAATCAACAACGGCAGTTAATCTTGCAGTTGTGTTTTCACAACAGGGAAAAAGAGTGCTGTTTGTAAATGCTGACCTGCGGAAACAACAAAAAAATTCTATGTTGGAAATCACGGACAATATTGGTTTAACGGATATATTAACGGGAGAAGTGAGCTTAACTTATGCAGTTAAAGAATCAAATATAGAAAATCTGTATCTATTAAATTCTGGATACCCCTCACAAAATCCTTCTGAATTATTAGGGTCAGCAAGAATGGAGGAATTTCTCCAAGAGGCGTATCAAAAATACGATATGATTATTTTTGATACGCCCCCTATGTTAACTGTGTCAGATTCTCAAGTAATGGCGAACCAATGTGATGGAATCATTTTGGTTGTCGATAGTGGAAAGACAAAAATAGAATCGGCGGTTAAGACAAAGAAATTATTACAAACAGTTAAAGGTAAATTACTCGGGGTTGTTCTGAATAATTGTAATAATCAATAA\n->43vir___bpsG|NC13_RS05325|BCE_G9241_pBC218_0066|Bacillus cereus exo-polysaccharide operon gene G capsular polysaccharide biosynthesis protein [plasmid pBC218] [Bacillus cereus str. G9241]\n-ATGGAAAGGATAGTTAGCCTACGTGAAATTATGGCTATTCTTCAAAAGTATTTTAAATTAATTATTTTTACTACACTCTTAGCGGGGGCAATCAGTAGTATTATCAGTTTTTATGTCGTAACCCCCAAATATGAAAAAAAGACACAACTGTTGATTTTTAAACGATTAAATTCTGATCAGGAAGTTTACAATCCAATTGAATTGCAGACAAATTTACAATTAATAAATACATATAATGAAATGATCACAAGTTATAATATCTTAGAAAAAGTAGTAAAGAATTTAAATCTAAATGAAACAGTAGAAGAATTAATAAGTAAAGTTAACATTAAAAATGAAAAAAATTCACAAGTTATTACTATAGTAGTACAAGATAAAAATCCGAAACAAGCTGCAGCGGTTGCTAATGAAATTTCAAGAGTATTTCGGGAAGAAGTCATTAGTATTATGAATCTTGACAATGTTACAGTTCTAACGAAAGCAGATGAGACTGGTGAACAAATACCTGTCAAACCGCAGCCATTACTTAATATAATAGTTGCACTTGTTATTGGTTTATTTGTGGGAGTCGGTATATCCCTTTTAAGGGAATACTCAGATAAAACCATTAGAAGTGAAAAAGATGTGATGAATTCATTAGAATTATCTGTTCTGGGTAGTATTGCAACAAATTCCAATACAAATAATCCAAGAAAGTTTAAAACTAAGAAGAGACCATTTAGAGGTGGAACTATTGATTAA\n->44vir___bpsH|NC13_RS05330|BCE_G9241_pBC218_0067|Bacillus cereus exo-polysaccharide operon gene H LytR family transcriptional regulator [plasmid pBC218] [Bacillus cereus str. G9241]\n-ATGAAAAAGAAAATTATATTTTGGATTTTAGGTAGTATAGTTTTTCTTATAATTGCAGGAGGAGCATATACATATTATGTCTGTGTTAATGTATCAAACACATTAGATGCAGTGCATAAGCCGTTGGATCAGGTTAAGTCTGAAAAACGTAATGAAAAAGTAGATATTGTAGACGTTAAGCCAATATCTATATTGTTAATTGGTGTAGACCAAAGAGCTAATGAAACAGGGCGTTCAGATTCACAAATGTTATTTACATTAAATCCACAAAAAAAATCTATGCAAATTACGAGCATTCCACGTGATTCTTATACAGAAATTGTAGGAAAGGGGAAAAAGGATAAGATTAATCATGCATATGCATTTGGTGGCATTGATATGGCTGTAAAAACGTTAGAGAATTTTCTTAATGTACCAGTCGATCATTATATAGAAGTAAATATGTCTGGTTTTCAAGATGTTGTGGATGCATTTGGTGGTGTCGATATTAATAATGATTTAGAATTTAATTATGAAGGTTCGCACTTTACAAAAGGGAATATACACCTTAACGGTACAGAAGCATTAAGATATTCTCGTATGCGTTATGAAGACCCACGTGGTGATTTCGGTCGTCAAATACGGCAACGTCAAATAATTCAAGGAGTAATAAAAAAAGGTGCAAGTGTATCTTCTTTGATAAATTATGGTGACGTATTAAAGGCAATTGAGAAAAACGTAAAAACAAGTTTAAGTCAAGTTCAAATGTTTGATATTCAAAAGAACTATAAAGATTGTATACAGAATATTGTAGAAATCCAAATCCAAGGTGCTGGCCATAAAGCTGCTGATGGCATTTGGTACTATTATGTACCAGAAGACGTAAAACAAGATTTAACGAATAAGTTAAGAGCTCATCTTGAATTGAAGAAGTAA\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_virulence_db/btyper.xml --- a/btyper-2.0.3/seq_virulence_db/btyper.xml Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| @@ -1,57 +0,0 @@ -<tool id="btyper" name="BTyper" version="2.0.3"> - <requirements> - <requirement type="package" version="2.7">python</requirement> - <requirement type="package">biopython</requirement> - <requirement type="package">blast</requirement> - </requirements> - <command detect_errors="exit_code"><![CDATA[ - - python $__tool_directory__/btyper - -t seq - #if $jobtype.select == "seq" - -i $jobtype.asm - #else if $jobtype.select == "draft" - -i $jobtype.draft --draft_genome - #end if - - -o "./"; cat btyper_final_results/*.txt > results.txt; - - ]]></command> - <inputs> - <conditional name="jobtype"> - <param name="select" type="select" label="Assembly or FASTQ Reads?"> - <option value="draft">Draft Genome</option> - <option value="seq">Complete Genome</option> - </param> - <when value="seq"> - <param name="asm" type="data" format="fasta" label="FASTA" /> - </when> - <when value="draft"> - <param name="draft" type="data" format="fasta" label="FASTA" /> - </when> - </conditional> - - </inputs> - <outputs> - <data format="tabular" label="BTyper Results" name="results" from_work_dir="*.txt"/> - </outputs> - <help><![CDATA[ - BTyper is a that employs a combination of (i) virulence gene-based typing, (ii) multi-locus sequence typing (MLST), (iii) panC clade typing, and (iv) rpoB allelic typing to rapidly classify B. cereus group isolates using nucleotide sequencing data. - - The Draft Genome option concatenates contigs in a single fasta file and produces a single report. The Complete Genome option assumes a single chromosome, and plasmids if present, and the report contains a section for each fasta header in the input file. - - ]]></help> - <citations> - <citation type="bibtex"> - @misc{carrol_kovac_miller_wiedman_2017, - title={Rapid, high-throughput identification of anthrax-causing and emetic Bacillus cereus group genome assemblies using BTyper, a computational tool for virulence-based classification of Bacillus cereus group isolates using nucleotide sequencing data.}, - url={http://aem.asm.org/content/early/2017/06/12/AEM.01096-17}, - journal={Applied and Environmental Microbiology}, publisher={ASM}, - author={Carroll, Laura M., Jasna Kovac, Rachel A. Miller, Martin Wiedmann}, - year={2017}, month={Jun}} , - }</citation> - </citations> - - - -</tool> |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_virulence_db/headers.txt --- a/btyper-2.0.3/seq_virulence_db/headers.txt Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| @@ -1,48 +0,0 @@ ->1vir___bceT|gi|1665720|dbj|BAA04134.1| diarrheal toxin [Bacillus cereus] ->2vir___pagA|gi|4894326|gb|AAD32414.1| pXO1-110 [plasmid] [Bacillus anthracis] ->3vir___hasA|gi|10956340|ref|NP_052789.1| pXO1-93 [plasmid] [Bacillus anthracis] ->4vir___lef|gi|10956354|ref|NP_052803.1| pXO1-107 [plasmid] [Bacillus anthracis] ->5vir___atxA|gi|10956365|ref|NP_052814.1| pXO1-118 [plasmid] [Bacillus anthracis] ->6vir___cya|gi|10956369|ref|NP_052818.1| pXO1-122 [plasmid] [Bacillus anthracis] ->7vir___capA|gi|10956446|ref|NP_053211.1| pXO2-56 [plasmid] [Bacillus anthracis] ->8vir___capC|gi|10956447|ref|NP_053212.1| pXO2-57 [plasmid] [Bacillus anthracis] ->9vir___capB|gi|10956448|ref|NP_053213.1| pXO2-58 [plasmid] [Bacillus anthracis] ->10vir___inhA2|gi|30018848|ref|NP_830479.1| immune inhibitor A precursor [Bacillus cereus ATCC 14579] ->11vir___plcB|gi|30018852|ref|NP_830483.1| phospholipase C [Bacillus cereus ATCC 14579] ->12vir___cytK2|gi|30019265|ref|NP_830896.1| cytotoxin K [Bacillus cereus ATCC 14579] ->13vir___inhA1|gi|30019435|ref|NP_831066.1| immune inhibitor A precursor [Bacillus cereus ATCC 14579] ->14vir___nheA|gi|30019951|ref|NP_831582.1| non-hemolytic enterotoxin lytic component L2 [Bacillus cereus ATCC 14579] ->15vir___nheB|gi|30019952|ref|NP_831583.1| non-hemolytic enterotoxin lytic component L1 [Bacillus cereus ATCC 14579] ->16vir___nheC|gi|30019953|ref|NP_831584.1| enterotoxin C [Bacillus cereus ATCC 14579] ->17vir___entFM|gi|30020092|ref|NP_831723.1| enterotoxin [Bacillus cereus ATCC 14579] ->18vir___hblB|gi|30021213|ref|NP_832844.1| hemolysin BL binding component precursor [Bacillus cereus ATCC 14579] ->19vir___hblA|gi|30021214|ref|NP_832845.1| hemolysin BL binding component precursor [Bacillus cereus ATCC 14579] ->20vir___hblD|gi|30021215|ref|NP_832846.1| hemolysin BL lytic component L1 [Bacillus cereus ATCC 14579] ->21vir___hblC|gi|30021216|ref|NP_832847.1| hemolysin BL lytic component L2 [Bacillus cereus ATCC 14579] ->22vir___hlyII|gi|30021625|ref|NP_833256.1| hemolysin II [Bacillus cereus ATCC 14579] ->23vir___plcA|gi|30021854|ref|NP_833485.1| 1-phosphatidylinositol phosphodiesterase precursor [Bacillus cereus ATCC 14579] ->24vir___entA|gi|30023271|ref|NP_834902.1| enterotoxin / cell-wall binding protein [Bacillus cereus ATCC 14579] ->25vir___hlyR|gi|31322346|gb|AAO74585.1| hemolysin II regulatory protein [Bacillus cereus] ->26vir___clo|gi|62550724|gb|AAX88798.1| cereolysin O [Bacillus cereus] ->12vir___cytK1|gi|114152686|gb|ABI52591.1| cytotoxin K [Bacillus cytotoxicus] ->27vir___cesC|gi|190015504|ref|YP_001967168.1| ABC transporter ATP-binding protein, CesC [plasmid] [Bacillus cereus] ->28vir___cesD|gi|190015506|ref|YP_001967167.1| putative permease, CesD [plasmid] [Bacillus cereus] ->29vir___cesB|gi|190015609|ref|YP_001967169.1| cereulide synthetase B, CesB [plasmid] [Bacillus cereus] ->30vir___cesA|gi|190015727|ref|YP_001967170.1| cereulide synthetase A, CesA [plasmid] [Bacillus cereus] ->31vir___plcR|gi|358355901|dbj|BAL21073.1| PlcR [Bacillus cereus NC7401] ->32vir___cerA|gi|505581110|gb|AGL98059.1| cereolysin A [Bacillus cereus] ->33vir___cerB|gi|505581118|gb|AGL98063.1| cereolysin B [Bacillus cereus] ->34vir___capD|gi|753753473|gb|AJI37081.1| capsule biosynthesis protein CapD [plasmid] [Bacillus anthracis] ->35vir___capE|gi|821583427|dbj|GAO62733.1| polyglutamate capsule biosynthesis protein CapE [Bacillus anthracis] ->31vir___plcR|Bacillus cereus ATCC 14579|NC_004722.1_prot_NP_835011.1_1 [gene=BC5350] [protein=transcriptional activator plcR] [protein_id=NP_835011.1] ->31vir___plcR|Bacillus thuringiensis serovar konkukian str 97-27|NC_005957.1_prot_BT9727_5033_1 [gene=plcR] [protein=transcription activator] [protein_id=YP_039343.1] ->31vir___plcR|Bacillus anthracis str Ames|NC_003997.3:c5081942-5081085_Bacillus_anthracis_str._Ames_chromosome_complete_genome ->36vir___bpsX|NC13_RS05290|BCE_G9241_pBC218_0059|Bacillus cereus exo-polysaccharide operon gene X polysaccharide translocase [plasmid pBC218] [Bacillus cereus str. G9241] ->37vir___bpsA|NC13_RS05295|BCE_G9241_pBC218_0060|Bacillus cereus exo-polysaccharide operon gene A acylneuraminate cytidylyltransferase family protein [plasmid pBC218] [Bacillus cereus str. G9241] ->38vir___bpsB||NC13_RS05300|BCE_G9241_pBC218_0061|Bacillus cereus exo-polysaccharide operon gene B UDP-N-acetylglucosamine 2-epimerase [hydrolyzing] [plasmid pBC218] [Bacillus cereus str. G9241] ->39vir___bpsC|NC13_RS05305|BCE_G9241_pBC218_0062|Bacillus cereus exo-polysaccharide operon gene C polyhydroxyalkanoate synthesis repressor PhaR [plasmid pBC218] [Bacillus cereus str. G9241] ->40vir___bpsD|NC13_RS05310|BCE_G9241_pBC218_0063|Bacillus cereus exo-polysaccharide operon gene D sugar transferase [plasmid pBC218] [Bacillus cereus str. G9241] ->41vir___bpsE|NC13_RS05315|BCE_G9241_pBC218_0064|Bacillus cereus exo-polysaccharide operon gene E UTP--glucose-1-phosphate uridylyltransferase [plasmid pBC218] [Bacillus cereus str. G9241] ->42vir___bpsF|NC13_RS0532|BCE_G9241_pBC218_0065|Bacillus cereus exo-polysaccharide operon gene F tyrosine protein kinase [plasmid pBC218] [Bacillus cereus str. G9241] ->43vir___bpsG|NC13_RS05325|BCE_G9241_pBC218_0066|Bacillus cereus exo-polysaccharide operon gene G capsular polysaccharide biosynthesis protein [plasmid pBC218] [Bacillus cereus str. G9241] ->44vir___bpsH|NC13_RS05330|BCE_G9241_pBC218_0067|Bacillus cereus exo-polysaccharide operon gene H LytR family transcriptional regulator [plasmid pBC218] [Bacillus cereus str. G9241] |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-2.0.3/seq_virulence_db/virul_aa_db.fasta --- a/btyper-2.0.3/seq_virulence_db/virul_aa_db.fasta Tue May 17 01:23:56 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| b'@@ -1,450 +0,0 @@\n->1vir___bceT|gi|1665720|dbj|BAA04134.1| diarrheal toxin [Bacillus cereus]\n-MKELVSTARIGRSLGIHLILATQKPSGVVDDQIWSNSKFKLALKVQNTSDSNEILKTPDAAEITLPGRAY\n-LQVGNNEIYELFQSAWSGADYVENKEDKEHLDATIYAINDLGQYEILSEDLSGLGSSKEVISVPSELDAV\n-IDYIHDYAEINEIEALARPWLPPLPESVYLQDLHAIQFKEAWAKEKKPLQATVGLLDQPELQSQTPLTLD\n-ISKDGHVAVFSSPGYGKSTFLQSVVMDVARQHSPEHLHVYLVDLGTNGLLPLKGLPHVADTITIDESEKC\n-LKFVERLTQEMKNRKRLLSEYDVANIEMYEKASGKEIPHIIIAIDNYDAVKEAKFYESFEMLIMQIVRDG\n-ASLGILFFYVFFYFGG\n-\n->2vir___pagA|gi|4894326|gb|AAD32414.1| pXO1-110 [plasmid] [Bacillus anthracis]\n-MKKRKVLIPLMALSTILVSSTGNLEVIQAEVKQENRLLNESESSSQGLLGYYFSDLNFQAPMVVTSSTTG\n-DLSIPSSELENIPSENQYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQEVINKASNSNKIRLEKG\n-RLYQIKIQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKRSTSAGPTVPDRDND\n-GIPDSLEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEA\n-RHPLVAAYPIVHVDMENIILSKNEDQSTQNTDSQTRTISKNTSTSRTHTSEVHGNAEVHASFFDIGGSVS\n-AGFSNSNSSTVAIDHSLSLAGERTWAETMGLNTADTARLNANIRYVNTGTAPIYNVLPTTSLVLGKNQTL\n-ATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSSTPITMNYNQFLELEKTKQLRLDTDQVYGNIAT\n-YNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGKDLNLVERRIAAVNPSDPLETTKPDMTLKEALKIAF\n-GFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRN\n-NIAVGADESVVKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQD\n-GKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEIG\n-\n->3vir___hasA|gi|10956340|ref|NP_052789.1| pXO1-93 [plasmid] [Bacillus anthracis]\n-MKVAVVVPSYNESASAIVNTINSVLAQDYPIHEIFFVDDGSKDKSAYEVALKMREELLRTQREIAATTKN\n-ICSEILGIPDLIVHRLPKNCGKRHAQLWAFKRTTADAIVTIDSDGDLFPNAVRELLKPFNDEKVMATTGH\n-VNIRNRNDNLLTKLIDMRYDNAFRVERAAQSVTGNVLVCSGPLSCYRREVITENLEHYGSQMFLGEEVQF\n-GDDRCLTNYAILKGKTVYQSTARCITDAPTTLKQFLKQQLRWNKSFFRESLISLGIGMKKPNVLVWTIFE\n-ISLWILFGLSLLLSIILKASHVGLILAVYYLGYISLAVYARNVFYLLKHPLTFLLAPLYGILHVLALLPI\n-RFYALLTIKSNGWGTR\n-\n->4vir___lef|gi|10956354|ref|NP_052803.1| pXO1-107 [plasmid] [Bacillus anthracis]\n-MNIKKEFIKVISMSCLVTAITLSGPVFIPLVQGAGGHGDVGMHVKEKEKNKDENKRKDEERNKTQEEHLK\n-EIMKHIVKIEVKGEEAVKKEAAEKLLEKVPSDVLEMYKAIGGKIYIVDGDITKHISLEALSEDKKKIKDI\n-YGKDALLHEHYVYAKEGYEPVLVIQSSEDYVENTEKALNVYYEIGKILSRDILSKINQPYQKFLDVLNTI\n-KNASDSDGQDLLFTNQLKEHPTDFSVEFLEQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAFNYMDKF\n-NEQEINLSLEELKDQRMLSRYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKE\n-LLKRIQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYD\n-INQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYNKIYLYENMNINNLTATLGADLVDS\n-TDNTKINRGIFNEFKKNFKYSISSNYMIVDINERPALDNERLKWRIQLSPDTRAGYLENGKLILQRNIGL\n-EIKDVQIIKQSEKEYIRIDAKVVPKSKIDTKIQEAQLNINQEWNKALGLPKYTKLITFNVHNRYASNIVE\n-SAYLILNEWKNNIQSDLIKKVTNYLVDGNGRFVFTDITLPNIAEQYTHQDEIYEQVHSKGLYVPESRSIL\n-LHGPSKGVELRNDSEGFIHEFGHAVDDYAGYLLDKNQSDLVTNSKKFIDIFKEEGSNLTSYGRTNEAEFF\n-AEAFRLMHSTDHAERLKVQKNAPKTFQFINDQIKFIINS\n-\n->5vir___atxA|gi|10956365|ref|NP_052814.1| pXO1-118 [plasmid] [Bacillus anthracis]\n-MEATKRYLCLYLKESQEKFISNWKKRILVHEHDPYKNEIIKNGTHLLHVFTMYMREEINLQDIEDISKKI\n-AQERMDAKVNIADFIYNTNEGKKEILNTLFLLNPTGQECKVVIEQINLFFDHLIYSTIYSYYKLKKEYIH\n-SYYELKKKYN\n-\n->6vir___cya|gi|10956369|ref|NP_052818.1| pXO1-122 [plasmid] [Bacillus anthracis]\n-MTRNKFIPNKFSIISFSVLLFAISSSQAIEVNAMNEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTE\n-FTNETLDKIQQTQDLLKKIPKDVLEIYSELGGEIYFTDIDLVEHKELQDLSEEEKNSMNSRGEKVPFASR\n-FVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLF\n-SQKFKEKLELNNKSIDINFIKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKIS\n-ESLKKEGVEKDRIDVLKGEKALKASGLVPEHADAFKKIARELNTYILFRPVNKLATNLIKSGVATKGLNV\n-HGKSSDWGPVAGYIPFDQDLSKKHGQQLAVEKGNLENKKSITEHEGEIGKIPLKLDHLRIEELKENGIIL\n-KGKKEIDNGKKYYLLESNNQVYEFRISDENNEVQYKTKEGKITVLGEKFNWRNIEVMAKNVEGVLKPLTA\n-DYDLFALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKGVTNLLIKYGIERKPDSTKGTLSNWQKQMLDRL\n-NEAVKYTGYTGGDVVNHGTEQDNEEFPEKDNEIFIINPEGEFILTKNWEMTGRFIEKNITGKDYLYYFNR\n-SYNKIAPGNKAYIEWTDPITKAKINTIPTSAEFIKNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGY\n-LSDYYNSANHIFSQEKKRKISIFRGIQAYNEIENVLKSKQIAPEYKNYFQYLKERITNQVQLLLTHQKSN\n-IEFKLLYKQLNFTENETDNFEVFQKIIDEK\n-\n->7vir___capA|gi|10956446|ref|NP_053211.1| pXO2-56 [plasmid] [Bacillus anthracis]\n-MRRKLTFQEKLLIFIKKTKKKNPRYVAIVLPLIAVILIAATWVQRTE'..b'SDRFL\n-VSNMIGLQETGIYTVGSQIAMIIMILQESFNKAWVPWLFSNLKKDKLILKKRIVKITYLY\n-YVVILVGVIILSMISPLVVTWFAGFKYQGADKYIFWLALGYAFNGMYKMVTNYIFYVGKT\n-YYLSIVTAITALINLGLSYLLILLNGAIGAAQATAISYFISFILTFYLSNKVYKMPWALI\n-KNKN\n->37vir___bpsA|NC13_RS05295|BCE_G9241_pBC218_0060|Bacillus cereus exo-polysaccharide operon gene A acylneuraminate cytidylyltransferase family protein [plasmid pBC218] [Bacillus cereus str. G9241]\n-MYGGKTFVAIIPARGGSKGIPQKNVSVVGGKPLIQYTIDEAQNSKYLDDFIVSTDDREIA\n-KIAKGCGAKVPFLRPKELAGDKIKTIDVLIHAVQSLSVMGKKYDYVVLLQPTQPLRKSMH\n-IDEAIQHIIKKKEQSLVSVNEVNEHPLLMRSINEKGHLESLLKVNSTVRRQDFLKFFKIN\n-GAIYINKINENFNQNTSLNDNRLAYVMEKKYDLDIDELKDLEKFKHLISKELNTG\n->38vir___bpsB||NC13_RS05300|BCE_G9241_pBC218_0061|Bacillus cereus exo-polysaccharide operon gene B UDP-N-acetylglucosamine 2-epimerase [hydrolyzing] [plasmid pBC218] [Bacillus cereus str. G9241]\n-MKKILFLTGTRADYGKIKSLMWKVQESNKFDLHIFVTGMHNLSKYGSTWREIEKDGFKNL\n-HYFINQKSESCMDMALSNTILGLSNYVHELNPDMIVIHGDRLESLAGAIVGAFNNIKVAH\n-IEGGEKSGTIDESIRHAITKFSHIHLVSNEEAKKRIKQLGELEKNIFVIGSPDIDIMLSE\n-NLPTIEKVKSRYGINFEKYSILMYHPVTTEINRVEENIKNVVDAVKAVEDNYIVIYPNND\n-EGSSIILNEFKRFNGDSKIRLFPSMKFEYFLTLLKHSQYMIGNSSAGIRETGVYGVPSVD\n-IGNRQKGRYCMNELANIIHTQEDKDKIVNSIEILKNKDKCTLKMKKGFFGNGKSDKKFIE\n-LLESKKIWEVEIQKKFIDVVY\n->39vir___bpsC|NC13_RS05305|BCE_G9241_pBC218_0062|Bacillus cereus exo-polysaccharide operon gene C polyhydroxyalkanoate synthesis repressor PhaR [plasmid pBC218] [Bacillus cereus str. G9241]\n-MKKKYIKIGSRKIGKGYRPLVIVEIGINHEGDLNVAKEMVDAAHKAGAEIIKHQTHVIED\n-EMSNKAKNVIPGNTDVSIFDVMARCALNEPDEIKLKEYVESKGMIYLSTPFSRAAANRLE\n-RMGVLAYKIGSGECNNYPLIEHVASFGKPMIISTGMNNIDSVKKTVEILEKYKIQYSLLH\n-CTNVYPTPASLVRLGGMEELQRTFPNAVIGLSDHTVNNNACLAATALGASVLERHFTDSK\n-SRKGPDIVCSMDPKELEELIKGVAEVAKMRGGKKEAAKEEKITIDFAFSTVVTIEDLRAG\n-ELITKDNIWVKRPGTGEIKAEHFNSLLGKKVTRDIPRDEHLMWNDIEK\n->40vir___bpsD|NC13_RS05310|BCE_G9241_pBC218_0063|Bacillus cereus exo-polysaccharide operon gene D sugar transferase [plasmid pBC218] [Bacillus cereus str. G9241]\n-MSNTSSISRTESKDRLGYLHEKKSYLFMKRFIDIVAASFGIVLLCWLFFLLAILIKLEDP\n-KGPVFFKQKRLGKKEKEFYMFKFRSMVSNAEELLDSILNLNEVSGAMFKIQKDPRVTKVG\n-KFIRRTSIDELPQLWNVLKGDMSLVGPRPPLPREVVKYTDYDKQRLLVTPGCTGLWQVSG\n-RNDLSFKEMVELDIIYIKNRSVMNDLKIIIKTFKIIFSPNSAY\n->41vir___bpsE|NC13_RS05315|BCE_G9241_pBC218_0064|Bacillus cereus exo-polysaccharide operon gene E UTP--glucose-1-phosphate uridylyltransferase [plasmid pBC218] [Bacillus cereus str. G9241]\n-MKKIKKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQYIVEEAIESGIEDIIIVTGKG\n-KRAIEDHFDHSFELEKKLLEKGKHEVLEKVQASSKINIHYIRQKEPKGLGHAVWCARKFI\n-GNEPFAVLLGDDIVQAETPCLRQLMDEYEGTQSAVIGVQKVPENEVHRYGIIDPVEQNDR\n-RYQVRQFVEKPAEGTAPSNLAIMGRYVLTPEIFMFLENQQTGAGGEIQLTDAIQRLNEIQ\n-SVFAYDFEGTRFDVGEKLGFIKTTIEMALQDKGIQEELLNHMEWLLKSESSREYK\n->42vir___bpsF|NC13_RS0532|BCE_G9241_pBC218_0065|Bacillus cereus exo-polysaccharide operon gene F tyrosine protein kinase [plasmid pBC218] [Bacillus cereus str. G9241]\n-MQSVITKTDPQSPISEQYRIVRTNISFLCINNTIRSLIVTSPEAGEGKSTTAVNLAVVFS\n-QQGKRVLFVNADLRKQQKNSMLEITDNIGLTDILTGEVSLTYAVKESNIENLYLLNSGYP\n-SQNPSELLGSARMEEFLQEAYQKYDMIIFDTPPMLTVSDSQVMANQCDGIILVVDSGKTK\n-IESAVKTKKLLQTVKGKLLGVVLNNCNNQ\n->43vir___bpsG|NC13_RS05325|BCE_G9241_pBC218_0066|Bacillus cereus exo-polysaccharide operon gene G capsular polysaccharide biosynthesis protein [plasmid pBC218] [Bacillus cereus str. G9241]\n-MERIVSLREIMAILQKYFKLIIFTTLLAGAISSIISFYVVTPKYEKKTQLLIFKRLNSDQ\n-EVYNPIELQTNLQLINTYNEMITSYNILEKVVKNLNLNETVEELISKVNIKNEKNSQVIT\n-IVVQDKNPKQAAAVANEISRVFREEVISIMNLDNVTVLTKADETGEQIPVKPQPLLNIIV\n-ALVIGLFVGVGISLLREYSDKTIRSEKDVMNSLELSVLGSIATNSNTNNPRKFKTKKRPF\n-RGGTID\n->44vir___bpsH|NC13_RS05330|BCE_G9241_pBC218_0067|Bacillus cereus exo-polysaccharide operon gene H LytR family transcriptional regulator [plasmid pBC218] [Bacillus cereus str. G9241]\n-MKKKIIFWILGSIVFLIIAGGAYTYYVCVNVSNTLDAVHKPLDQVKSEKRNEKVDIVDVK\n-PISILLIGVDQRANETGRSDSQMLFTLNPQKKSMQITSIPRDSYTEIVGKGKKDKINHAY\n-AFGGIDMAVKTLENFLNVPVDHYIEVNMSGFQDVVDAFGGVDINNDLEFNYEGSHFTKGN\n-IHLNGTEALRYSRMRYEDPRGDFGRQIRQRQIIQGVIKKGASVSSLINYGDVLKAIEKNV\n-KTSLSQVQMFDIQKNYKDCIQNIVEIQIQGAGHKAADGIWYYYVPEDVKQDLTNKLRAHL\n-ELKK\n' |
| b |
| diff -r 56713cdcff48 -r 7681f3c28536 btyper-3.2.0/btyper.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/btyper-3.2.0/btyper.xml Tue May 17 02:04:14 2022 +0000 |
| [ |
| @@ -0,0 +1,36 @@ +<tool id="btyper" name="BTyper" version="3.2.0"> + <requirements> + <requirement type="package">btyper3</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + + btyper3 -i $draft + -o "./"; cat btyper_final_results/*.txt > results.txt; + + ]]></command> + <inputs> + <param name="draft" type="data" format="fasta" label="FASTA" /> + </inputs> + <outputs> + <data format="tabular" label="BTyper Results" name="results" from_work_dir="*.txt"/> + </outputs> + <help><![CDATA[ + BTyper is a that employs a combination of (i) virulence gene-based typing, (ii) multi-locus sequence typing (MLST), (iii) panC clade typing, and (iv) rpoB allelic typing to rapidly classify B. cereus group isolates using nucleotide sequencing data. + + The Draft Genome option concatenates contigs in a single fasta file and produces a single report. The Complete Genome option assumes a single chromosome, and plasmids if present, and the report contains a section for each fasta header in the input file. + + ]]></help> + <citations> + <citation type="bibtex"> + @misc{carrol_kovac_miller_wiedman_2017, + title={Rapid, high-throughput identification of anthrax-causing and emetic Bacillus cereus group genome assemblies using BTyper, a computational tool for virulence-based classification of Bacillus cereus group isolates using nucleotide sequencing data.}, + url={http://aem.asm.org/content/early/2017/06/12/AEM.01096-17}, + journal={Applied and Environmental Microbiology}, publisher={ASM}, + author={Carroll, Laura M., Jasna Kovac, Rachel A. Miller, Martin Wiedmann}, + year={2017}, month={Jun}} , + }</citation> + </citations> + + + +</tool> |