| Previous changeset 7:4bfb3a8dd955 (2019-03-10) Next changeset 9:728c6b81b45e (2019-03-11) |
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Commit message:
Add run_all |
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modified:
galaxy/tools/config_builder/config_builder.xml |
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added:
galaxy/tools/run_all/run_all.xml |
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| diff -r 4bfb3a8dd955 -r 7708da43aefb galaxy/tools/config_builder/config_builder.xml --- a/galaxy/tools/config_builder/config_builder.xml Sun Mar 10 00:07:09 2019 -0500 +++ b/galaxy/tools/config_builder/config_builder.xml Mon Mar 11 03:27:37 2019 -0400 |
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| @@ -88,7 +88,7 @@ $forward $reverse - config.yaml + cc ]]></command> |
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| diff -r 4bfb3a8dd955 -r 7708da43aefb galaxy/tools/run_all/run_all.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/galaxy/tools/run_all/run_all.xml Mon Mar 11 03:27:37 2019 -0400 |
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| @@ -0,0 +1,27 @@ +<tool id="run_all" name="PathOGiST - Run All" version="1.0.0"> + <description>: Runs the entire PathOGiST pipeline</description> + <requirements> + <requirement type="package" version="0.3">pathogist</requirement> + </requirements> + + <command><![CDATA[ + PATHOGIST $config + ]]></command> + + <inputs> + <param name="config" type="data" format="yaml" label="Config YAML" + help="Config YAML file for PathOGiST"/> + </inputs> + + <outputs> + <data name="clustering" label="Consensus clustering on ${on_string}" format="tabular" from_work_dir="cc.tsv"/> + </outputs> + + <help> + + </help> + + <citations> + + </citations> +</tool> |