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Commit message:
planemo upload for repository https://github.com/fabio-cumbo/GDCWebApp4Galaxy commit 862945f23f52a425b09b1631bd1cde8d22abca03 |
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added:
gdcwebapp.xml |
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| diff -r 000000000000 -r 7709b8ca3296 gdcwebapp.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gdcwebapp.xml Mon Nov 06 03:05:11 2017 -0500 |
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| @@ -0,0 +1,20 @@ +<?xml version="1.0"?> +<tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True" profile="17.09"> + <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description> + <requirements> + <requirement type="package" version="2.7.10">python</requirement> + <requirement type="package" version="1.0.1">json_collect_data_source</requirement> + </requirements> + <command detect_errors="exit_code">json_collect_data_source.py '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'</command> + <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php"> + <display>Go to GDCWebApp service $GALAXY_URL</display> + <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" /> + </inputs> + <outputs> + <collection name="list_output" type="list:list" label="${tool.name} Output Collection"> + <discover_datasets pattern="(?P<identifier_0>[^_]+)_(?P<identifier_1>[^_]+)_(?P<ext>[^_]+)_(?P<dbkey>[^_]+)" ext="auto" visible="False" directory="tmp" /> + </collection> + <data name="output1" format="auto" label="${tool.name} Output Data" /> + </outputs> + <options sanitize="False" refresh="True" /> +</tool> |