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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/DIMet commit b74312f0a6cb28e204f8633453e493fa0b2c89d8 |
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modified:
dimet_differential_analysis.xml macros.xml |
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| diff -r f8247afcd994 -r 78f776370dfb dimet_differential_analysis.xml --- a/dimet_differential_analysis.xml Wed Mar 27 16:49:35 2024 +0000 +++ b/dimet_differential_analysis.xml Tue May 21 13:44:23 2024 +0000 |
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| @@ -267,11 +267,11 @@ You can precise how you want your analysis to be executed, with the parameters: -- **conditions**: the conditions present in your data, specifying in first place your CONTROL condition (this ordering is crucial to make the comparisons in a coherent sense). +- **conditions**: the conditions present in your data, to perform the pairwise comparison. - **comparisons** : the pairs of [condition, timepoint] groups to compare -- **datatypes** : the measures type(s) that you want to run +- **datatypes** : the measures type(s) that you want to run (see above in Input data files section) - **statistical_test** : choose, by type of measure, the specific statistical test to be applied. |
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| diff -r f8247afcd994 -r 78f776370dfb macros.xml --- a/macros.xml Wed Mar 27 16:49:35 2024 +0000 +++ b/macros.xml Tue May 21 13:44:23 2024 +0000 |
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| @@ -1,7 +1,6 @@ <macros> <token name="@TOOL_VERSION@">0.2.4</token> - <token name="@VERSION_SUFFIX@">1</token> - <token name="@EXECUTABLE@">pca</token> + <token name="@VERSION_SUFFIX@">2</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">dimet</requirement> @@ -490,7 +489,7 @@ </valid> </sanitizer> </param> - <repeat name="factor_list" title="Conditions" default="2" min="2" max="2" help="Specify conditions to compare from metadata file (for each comparison, the first specified condition is the reference). You have to load a metadata file prior to have access to condition list"> + <repeat name="factor_list" title="Conditions" default="2" min="2" max="2" help="Specify conditions to compare from metadata file (for each comparison, the last specified condition is the reference). You have to load a metadata file prior to have access to condition list"> <param name="condition" label="Condition" type="select" optional="false" multiple="false"> <options from_dataset="metadata_path"> <column name="condition" index="1"/> @@ -552,7 +551,7 @@ </repeat> </xml> <xml name="factor_list"> - <repeat name="factor_list" title="Conditions" min="2" max="2" help="Specify conditions to compare from metadata file (for each comparison, the first specified condition is the reference). You have to load a metadata file prior to have access to condition list"> + <repeat name="factor_list" title="Conditions" min="2" max="2" help="Specify conditions to be taken into account from metadata file (for each comparison, the last specified condition is the reference). You have to load a metadata file prior to have access to condition list"> <param name="condition" label="Condition" type="select" optional="false" multiple="false"> <options from_dataset="metadata_path"> <column name="condition" index="1"/> @@ -615,6 +614,11 @@ #if $abundance_file: ln -s '$abundance_file' data/abundance.csv && #end if + #set $axisx = "condition" + #if str( $output_options.bar_color ) == "condition": + #set $axisx = "timepoint" + #end if + ]]></token> <token name="@INIT_ENRICHMENT_PLOT@"><![CDATA[ |