| Previous changeset 5:09d6e4693887 (2020-10-05) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lofreq commit 3751719cd03b8380954e2231cf91496c863056e2 |
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modified:
lofreq_alnqual.xml |
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| diff -r 09d6e4693887 -r 791f73caa0c8 lofreq_alnqual.xml --- a/lofreq_alnqual.xml Mon Oct 05 20:14:58 2020 +0000 +++ b/lofreq_alnqual.xml Wed Jul 06 09:26:22 2022 +0000 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="lofreq_alnqual" name="Add LoFreq alignment quality scores" version="@TOOL_VERSION@+galaxy0" profile="18.01"> +<tool id="lofreq_alnqual" name="Add LoFreq alignment quality scores" version="@TOOL_VERSION@+galaxy1" profile="18.01"> <description>to aligned read SAM/BAM records</description> <macros> <import>macros.xml</import> @@ -23,7 +23,7 @@ <param name="reads" ftype="bam" value="lofreq-in1.bam" /> <param name="ref_selector" value="history" /> <param name="ref" ftype="fasta" value="pBR322.fa" /> - <output name="output" file="alnqual-out1.bam" /> + <output name="output" file="alnqual-out1.bam" ftype="bam" /> </test> <test> <param name="reads" ftype="bam" value="lofreq-in1.bam" /> @@ -32,7 +32,7 @@ <conditional name="alnqual_choice"> <param name="alnquals_to_use" value="-B" /> </conditional> - <output name="output" file="alnqual-out2.bam" /> + <output name="output" file="alnqual-out2.bam" ftype="bam" /> </test> <test> <param name="reads" ftype="bam" value="lofreq-in1.bam" /> @@ -41,7 +41,7 @@ <conditional name="alnqual_choice"> <param name="alnquals_to_use" value="-A" /> </conditional> - <output name="output" file="alnqual-out3.bam" /> + <output name="output" file="alnqual-out3.bam" ftype="bam" /> </test> <test> <param name="reads" ftype="bam" value="lofreq-in1.bam" /> @@ -50,14 +50,14 @@ <conditional name="alnqual_choice"> <param name="extended_baq" value="false" /> </conditional> - <output name="output" file="alnqual-out4.bam" /> + <output name="output" file="alnqual-out4.bam" ftype="bam" /> </test> <test> <param name="reads" ftype="bam" value="lofreq-in1.bam" /> <param name="ref_selector" value="history" /> <param name="ref" ftype="fasta" value="pBR322.fa" /> <param name="recompute" value="true" /> - <output name="output" file="alnqual-out5.bam" /> + <output name="output" file="alnqual-out5.bam" ftype="bam" /> </test> </tests> <help><![CDATA[ |