| Previous changeset 4:f00d903600fe (2016-11-14) Next changeset 6:09c6a051c5fd (2018-09-07) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit 19ea4feff5ccf3744c549b9a67259947a1cb90ba |
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modified:
filter-below-abund.py |
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| diff -r f00d903600fe -r 792d520ba676 filter-below-abund.py --- a/filter-below-abund.py Mon Nov 14 17:49:40 2016 -0500 +++ b/filter-below-abund.py Sat Jan 21 14:42:04 2017 -0500 |
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| @@ -34,18 +34,17 @@ # # Contact: khmer-project@idyll.org from __future__ import print_function + +import os import sys -import os + import khmer from khmer.thread_utils import ThreadedSequenceProcessor, verbose_fasta_iter WORKER_THREADS = 8 GROUPSIZE = 100 - CUTOFF = 50 -### - def main(): counting_ht = sys.argv[1] |