| Previous changeset 0:a77e88d426d9 (2019-03-01) Next changeset 2:f8683d234222 (2019-03-04) |
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Commit message:
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit 593a4002db3f2513974809a94db514c05fa589f6-dirty |
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modified:
kraken2.xml macros.xml |
| b |
| diff -r a77e88d426d9 -r 7932d09da19b kraken2.xml --- a/kraken2.xml Fri Mar 01 12:43:26 2019 -0500 +++ b/kraken2.xml Mon Mar 04 14:47:57 2019 -0500 |
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| @@ -9,12 +9,9 @@ <version_command>kraken2 --version</version_command> <command detect_errors="exit_code"> <![CDATA[ - @SET_DATABASE_PATH@ && - kraken2 --threads \${GALAXY_SLOTS:-1} @INPUT_DATABASE@ - #if $single_paired.single_paired_selector == 'yes' #if $forward_input.is_of_type( 'fastq' ): --fastq-input @@ -63,7 +60,6 @@ <param format="fasta,fastq" label="Input sequences" name="input_sequences" type="data" help="FASTA or FASTQ datasets"/> </when> </conditional> - <param name="" type="" format="" /> </inputs> <outputs> <data name="output" format="" /> |
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| diff -r a77e88d426d9 -r 7932d09da19b macros.xml --- a/macros.xml Fri Mar 01 12:43:26 2019 -0500 +++ b/macros.xml Mon Mar 04 14:47:57 2019 -0500 |
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| @@ -10,6 +10,4 @@ </options> </param> </xml> - <token name="@SET_DATABASE_PATH@">if [ -d '${kraken2_database.fields.path}/${kraken2_database.fields.name}' ]; then export KRAKEN2_DEFAULT_DB='${kraken2_database.fields.path}/${kraken2_database.fields.name}'; else export KRAKEN2_DEFAULT_DB='${kraken_database.fields.path}'; fi</token> - <token name="@INPUT_DATABASE@">--db "\$KRAKEN2_DEFAULT_DB"</token> </macros> |