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Commit message:
Uploaded |
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modified:
beagle_impute.sh |
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| diff -r 6a75b93ba5f2 -r 79abc9d00340 beagle_impute.sh --- a/beagle_impute.sh Fri Oct 21 10:35:32 2016 -0400 +++ b/beagle_impute.sh Tue Oct 25 14:32:06 2016 -0400 |
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| @@ -1,18 +1,15 @@ #!/bin/bash - +# variables affectation vcf_input=$1 ref=$2 out="out_imputed" +# create temporary directory directory=`dirname $0` - mkdir tmpdir$$ - cp -rf $vcf_input tmpdir$$/input.vcf - - +# launch beagle java -Xmx2g -jar $directory/beagle.jar ref=$ref gt=$vcf_input out=$out - - +# remove temporary dir rm -rf tmpdir$$ \ No newline at end of file |