| Previous changeset 11:eec9494fdafa (2021-09-10) Next changeset 13:9ee34ba73ebf (2023-02-17) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 798abf3172360e7e09d2036b04ee2090d28123bb |
|
modified:
rg_rnaStarSolo.xml |
| b |
| diff -r eec9494fdafa -r 79b885ce78d7 rg_rnaStarSolo.xml --- a/rg_rnaStarSolo.xml Fri Sep 10 16:46:15 2021 +0000 +++ b/rg_rnaStarSolo.xml Tue Nov 01 16:57:42 2022 +0000 |
| b |
| @@ -1,13 +1,13 @@ <tool id="rna_starsolo" name="RNA STARSolo" version="@VERSION@" profile="20.01" license="MIT"> <description>mapping, demultiplexing and gene quantification for single cell RNA-seq</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="edam"/> <xrefs> <xref type="bio.tools">star</xref> </xrefs> - <macros> - <import>macros.xml</import> - </macros> <expand macro="requirements"/> - <expand macro="edam"/> <expand macro="stdio" > <regex match="Segmentation fault" source="both" level="fatal" /> </expand> @@ -160,7 +160,7 @@ <when value="indexed"> <conditional name="GTFconditional"> <param name="GTFselect" type="select" - label="Reference genome with or without an annotation" + label="Reference genome with annotation" help="Select the '... with builtin gene-model' option to select from the list of available indexes that were built with splice junction information. Select the '... without builtin gene-model' option to select from the list of available indexes without annotated splice junctions, and provide your own splice junction annonations."> <option value="without-gtf" selected='true'>use genome reference without builtin gene-model</option> <option value="with-gtf">use genome reference with builtin gene-model</option> @@ -273,9 +273,9 @@ </conditional> <section name="solo" title="Advanced Settings" expanded="true"> <param argument="--soloStrand" type="select" label="Strandedness of Library" help="Unstranded has no strand information, Forward has the read strand the same as the original RNA molecule, Reverse has the read strand opposite to the original RNA molecule"> - <option value="Unstranded" /> - <option value="Forward" selected="true" /> - <option value="Reverse" /> + <option value="Unstranded" >No strand information</option> + <option value="Forward" selected="true" >Read strand same as the original RNA molecule</option> + <option value="Reverse" >Read strand opposite to the original RNA molecule</option> </param> <param argument="--soloFeatures" type="select" label="Collect UMI counts for these genomic features" > <option value="Gene" selected="true">Gene: Count reads matching the Gene Transcript</option> |