| Previous changeset 5:9b4830300f3a (2024-04-04) |
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Commit message:
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit c86a1b93cb7732f7331a981d13465653cc1a2790 |
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modified:
run-superdsm.py superdsm.xml |
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| diff -r 9b4830300f3a -r 79ec3263686a run-superdsm.py --- a/run-superdsm.py Thu Apr 04 15:26:50 2024 +0000 +++ b/run-superdsm.py Wed Apr 24 08:13:34 2024 +0000 |
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| @@ -80,6 +80,7 @@ os.environ['MKL_NUM_THREADS'] = str(num_threads_per_process) os.environ['OPENBLAS_NUM_THREADS'] = str(num_threads_per_process) + import giatools.io import ray import superdsm.automation import superdsm.io @@ -95,7 +96,7 @@ pipeline = superdsm.pipeline.create_default_pipeline() cfg = create_config(args) - img = superdsm.io.imread(img_filepath) + img = giatools.io.imread(img_filepath, impl=superdsm.io.imread) # Create configuration if it is required: if args.do_cfg or args.do_overlay or args.do_masks: |
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| diff -r 9b4830300f3a -r 79ec3263686a superdsm.xml --- a/superdsm.xml Thu Apr 04 15:26:50 2024 +0000 +++ b/superdsm.xml Wed Apr 24 08:13:34 2024 +0000 |
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| @@ -4,7 +4,7 @@ <import>creators.xml</import> <import>tests.xml</import> <token name="@TOOL_VERSION@">0.2.0</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> </macros> <creator> <expand macro="creators/bmcv"/> @@ -19,6 +19,7 @@ <requirements> <requirement type="package" version="@TOOL_VERSION@">superdsm</requirement> + <requirement type="package" version="0.1.1">giatools</requirement> <!-- Pin the dependencies to specific versions for reproducibility: |