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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/dwt_var_perfeature commit a684fffd461eea5ec33fe806fd2b6052c4321dcc |
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modified:
execute_dwt_var_perFeature.xml |
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| diff -r cb1c59d69557 -r 7a15159140d1 execute_dwt_var_perFeature.xml --- a/execute_dwt_var_perFeature.xml Wed Nov 11 12:12:22 2015 -0500 +++ b/execute_dwt_var_perFeature.xml Tue Aug 14 10:32:11 2018 -0400 |
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| @@ -1,31 +1,41 @@ -<tool id="dwt_var1" name="Wavelet variance" version="1.0.0"> - <description>using Discrete Wavelet Transfoms</description> - - <command interpreter="perl"> - execute_dwt_var_perFeature.pl $inputFile $feature $alpha $outputFile1 $outputFile2 - </command> - - <inputs> - <param format="tabular" name="inputFile" type="data" label="Select data"/> - <param name="feature" label="Feature column" type="data_column" data_ref="inputFile" multiple="true" help="Please select at least one column"/> - <param name="alpha" type="float" value="0.05" label="alpha (significance level)" /> - </inputs> - - <outputs> - <data format="tabular" name="outputFile1"/> - <data format="pdf" name="outputFile2"/> - </outputs> - <tests> - <test> - <param name="inputFile" value="dwt_var_in.interval"/> - <param name="feature" value="4"/> - <param name="alpha" value="0.05"/> - <output name="outputFile1" file="dwt_var_out1.tabular" compare="re_match"/> - <output name="outputFile2" file="dwt_var_out2.pdf" compare="sim_size"/> - </test> - </tests> - - <help> +<tool id="dwt_var1" name="Wavelet variance" version="1.0.1"> + <description>using Discrete Wavelet Transfoms</description> + <requirements> + <requirement type="package" version="5.26.2.1">perl</requirement> + <requirement type="package" version="3.4.1">r-base</requirement> + <requirement type="package" version="1.0_6">r-bitops</requirement> + <requirement type="package" version="1.7.5">r-waveslim</requirement> + <requirement type="package" version="4.6.8">r-wavethresh</requirement> + <requirement type="package" version="2.4_5">r-rwave</requirement> + </requirements> + <command> + perl '$__tool_directory__/execute_dwt_var_perFeature.pl' + '$inputFile' + $feature + $alpha + '$outputFile1' + '$outputFile2' + </command> + <inputs> + <param format="tabular" name="inputFile" type="data" label="Select data"/> + <param name="feature" label="Feature column" type="data_column" data_ref="inputFile" multiple="true" + help="Please select at least one column"/> + <param name="alpha" type="float" value="0.05" label="alpha (significance level)" /> + </inputs> + <outputs> + <data format="tabular" name="outputFile1"/> + <data format="pdf" name="outputFile2"/> + </outputs> + <tests> + <test> + <param name="inputFile" value="dwt_var_in.interval"/> + <param name="feature" value="4"/> + <param name="alpha" value="0.05"/> + <output name="outputFile1" file="dwt_var_out1.tabular" compare="re_match"/> + <output name="outputFile2" file="dwt_var_out2.pdf" compare="sim_size"/> + </test> + </tests> + <help> .. class:: infomark @@ -47,11 +57,5 @@ **Note** In order to obtain empirical p-values, a random perumtation scheme is implemented by the tool, such that the output may generate slightly variations in results each time it is run on the same input file. ------ - - -**Example** - - </help> - + </help> </tool> |