| Previous changeset 2:1080e07a2233 (2022-11-09) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit a59b05dd4a79b1b4e14ab1d78202c07a889ab023 |
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modified:
test-data/interval2maf-out1.maf test-data/interval2maf-out2.maf test-data/interval2maf-out3.maf |
| b |
| diff -r 1080e07a2233 -r 7adddc6015c1 test-data/interval2maf-out1.maf --- a/test-data/interval2maf-out1.maf Wed Nov 09 12:34:55 2022 +0000 +++ b/test-data/interval2maf-out1.maf Sat Apr 22 20:08:40 2023 +0000 |
| b |
| @@ -666,7 +666,9 @@ a score=6521322.0 s hg38.chr22 21635217 49 + 50818468 CTCCCCCTCCATGTCTAGTGC---CCAGGTGGCCACCAGATTCAAACTCAAG s eulFla1.LGHW01001899v1 119076 49 + 262521 CTCCCCCTCCACGTCTAATGC---CCAGATCGCCACCAAATTCAGGCTCAAG +i eulFla1.LGHW01001899v1 I 1 C 0 s mm10.chr16 81066123 46 - 98207768 ------CTCCCCACCTAATGCAGTCCAGATGGCTACCAGATTCAGGCTCAAG +i mm10.chr16 C 0 C 0 a score=31953654.0 s hg38.chr22 21634684 360 + 50818468 AAAGGCCTCAGTCAGTCCTGCTCCCAGAGGGACTCCCTGCTGTGGGATTCGCTGGGTAGCCAGACCAGCTTTCAGTGGACACAGGAGCAGCCCTTGTCCTGGTTCTCAGGGCTGCTGGGCTCAAGCTCTGGCGTGCCTGAAGCATCAGAGCCGAGGCCTGGAGAACAGGAGCCAATCTTCCGCAAGCGAGAGTTCAATAAGGAGATCAAGTCATTACTGAGCCAGCTGGAGTCCCTCGACCTGCCTGGCTACTGTCCGCTCCGTGAGCCCCATCGCACGCTGAACTTCCTGGCTGACCACCGCCTCTTCCCTGCCCTGCAAAGCGTGGTCAGCCAGGCTGTGGATAAGCTCCGTGGCGCC @@ -933,6 +935,7 @@ a score=5438213.0 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA s mm10.chr16 18219555 48 + 98207768 ATG------ATGGAGGTAAGTCCCC---ACCCCATTCCTGCT---GATTCCAGCGTCCCC +i mm10.chr16 C 0 C 0 a score=5438213.0 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA @@ -2346,6 +2349,7 @@ a score=799075.0 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=799075.0 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG @@ -2595,12 +2599,14 @@ s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG a score=799075.0 -s hg38.chr22 35726284 3 + 50818468 ATG -s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +s hg38.chr22 35726284 3 + 50818468 ATG +s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=799075.0 -s hg38.chr22 35726284 3 + 50818468 ATG -s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +s hg38.chr22 35726284 3 + 50818468 ATG +s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=799075.0 s hg38.chr22 35726284 3 + 50818468 ATG |
| b |
| diff -r 1080e07a2233 -r 7adddc6015c1 test-data/interval2maf-out2.maf --- a/test-data/interval2maf-out2.maf Wed Nov 09 12:34:55 2022 +0000 +++ b/test-data/interval2maf-out2.maf Sat Apr 22 20:08:40 2023 +0000 |
| b |
| @@ -344,7 +344,9 @@ a score=6521322.0 s hg38.chr22 21635217 49 + 50818468 CTCCCCCTCCATGTCTAGTGC---CCAGGTGGCCACCAGATTCAAACTCAAG s eulFla1.LGHW01001899v1 119076 49 + 262521 CTCCCCCTCCACGTCTAATGC---CCAGATCGCCACCAAATTCAGGCTCAAG +i eulFla1.LGHW01001899v1 I 1 C 0 s mm10.chr16 81066123 46 - 98207768 ------CTCCCCACCTAATGCAGTCCAGATGGCTACCAGATTCAGGCTCAAG +i mm10.chr16 C 0 C 0 a score=31953654.0 s hg38.chr22 21634684 360 + 50818468 AAAGGCCTCAGTCAGTCCTGCTCCCAGAGGGACTCCCTGCTGTGGGATTCGCTGGGTAGCCAGACCAGCTTTCAGTGGACACAGGAGCAGCCCTTGTCCTGGTTCTCAGGGCTGCTGGGCTCAAGCTCTGGCGTGCCTGAAGCATCAGAGCCGAGGCCTGGAGAACAGGAGCCAATCTTCCGCAAGCGAGAGTTCAATAAGGAGATCAAGTCATTACTGAGCCAGCTGGAGTCCCTCGACCTGCCTGGCTACTGTCCGCTCCGTGAGCCCCATCGCACGCTGAACTTCCTGGCTGACCACCGCCTCTTCCCTGCCCTGCAAAGCGTGGTCAGCCAGGCTGTGGATAAGCTCCGTGGCGCC @@ -611,6 +613,7 @@ a score=5438213.0 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA s mm10.chr16 18219555 48 + 98207768 ATG------ATGGAGGTAAGTCCCC---ACCCCATTCCTGCT---GATTCCAGCGTCCCC +i mm10.chr16 C 0 C 0 a score=5438213.0 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA @@ -2221,6 +2224,7 @@ a score=799075.0 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=201690.0 s hg38.chr22 35726287 11 + 50818468 CTGTCCTACTT @@ -2304,6 +2308,7 @@ a score=799075.0 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=799075.0 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG @@ -2553,8 +2558,9 @@ s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG a score=799075.0 -s hg38.chr22 35726284 3 + 50818468 ATG -s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +s hg38.chr22 35726284 3 + 50818468 ATG +s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=201690.0 s hg38.chr22 35726287 11 + 50818468 CTGTCCTACTT @@ -2636,12 +2642,14 @@ s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG a score=799075.0 -s hg38.chr22 35726284 3 + 50818468 ATG -s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +s hg38.chr22 35726284 3 + 50818468 ATG +s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=799075.0 -s hg38.chr22 35726284 3 + 50818468 ATG -s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +s hg38.chr22 35726284 3 + 50818468 ATG +s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=799075.0 s hg38.chr22 35726284 3 + 50818468 ATG |
| b |
| diff -r 1080e07a2233 -r 7adddc6015c1 test-data/interval2maf-out3.maf --- a/test-data/interval2maf-out3.maf Wed Nov 09 12:34:55 2022 +0000 +++ b/test-data/interval2maf-out3.maf Sat Apr 22 20:08:40 2023 +0000 |
| b |
| @@ -344,7 +344,9 @@ a score=6521322.0 s hg38.chr22 21635217 49 + 50818468 CTCCCCCTCCATGTCTAGTGC---CCAGGTGGCCACCAGATTCAAACTCAAG s eulFla1.LGHW01001899v1 119076 49 + 262521 CTCCCCCTCCACGTCTAATGC---CCAGATCGCCACCAAATTCAGGCTCAAG +i eulFla1.LGHW01001899v1 I 1 C 0 s mm10.chr16 81066123 46 - 98207768 ------CTCCCCACCTAATGCAGTCCAGATGGCTACCAGATTCAGGCTCAAG +i mm10.chr16 C 0 C 0 a score=31953654.0 s hg38.chr22 21634684 360 + 50818468 AAAGGCCTCAGTCAGTCCTGCTCCCAGAGGGACTCCCTGCTGTGGGATTCGCTGGGTAGCCAGACCAGCTTTCAGTGGACACAGGAGCAGCCCTTGTCCTGGTTCTCAGGGCTGCTGGGCTCAAGCTCTGGCGTGCCTGAAGCATCAGAGCCGAGGCCTGGAGAACAGGAGCCAATCTTCCGCAAGCGAGAGTTCAATAAGGAGATCAAGTCATTACTGAGCCAGCTGGAGTCCCTCGACCTGCCTGGCTACTGTCCGCTCCGTGAGCCCCATCGCACGCTGAACTTCCTGGCTGACCACCGCCTCTTCCCTGCCCTGCAAAGCGTGGTCAGCCAGGCTGTGGATAAGCTCCGTGGCGCC @@ -611,6 +613,7 @@ a score=5438213.0 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA s mm10.chr16 18219555 48 + 98207768 ATG------ATGGAGGTAAGTCCCC---ACCCCATTCCTGCT---GATTCCAGCGTCCCC +i mm10.chr16 C 0 C 0 a score=5438213.0 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA @@ -2221,6 +2224,7 @@ a score=799075.0 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=201690.0 s hg38.chr22 35726287 11 + 50818468 CTGTCCTACTT @@ -2304,6 +2308,7 @@ a score=799075.0 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=799075.0 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG @@ -2553,8 +2558,9 @@ s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG a score=799075.0 -s hg38.chr22 35726284 3 + 50818468 ATG -s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +s hg38.chr22 35726284 3 + 50818468 ATG +s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=201690.0 s hg38.chr22 35726287 11 + 50818468 CTGTCCTACTT @@ -2636,12 +2642,14 @@ s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG a score=799075.0 -s hg38.chr22 35726284 3 + 50818468 ATG -s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +s hg38.chr22 35726284 3 + 50818468 ATG +s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=799075.0 -s hg38.chr22 35726284 3 + 50818468 ATG -s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +s hg38.chr22 35726284 3 + 50818468 ATG +s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG +i eulFla1.LGHW01001967v1 C 0 C 0 a score=799075.0 s hg38.chr22 35726284 3 + 50818468 ATG |