| Previous changeset 36:5f39f745682f (2024-02-29) Next changeset 38:07849bf248e3 (2024-03-01) |
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Commit message:
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 80b849766a962bac4bd0bb8cb69c118cc42699cd-dirty |
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modified:
jbrowse2.py |
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| diff -r 5f39f745682f -r 7adde511daa1 jbrowse2.py --- a/jbrowse2.py Thu Feb 29 00:47:58 2024 +0000 +++ b/jbrowse2.py Thu Feb 29 00:51:45 2024 +0000 |
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| @@ -1137,9 +1137,7 @@ outputTrackConfig, ) elif dataset_ext == "bam": - real_indexes = track["conf"]["options"]["bam"]["bam_indices"][ - "bam_index" - ] + real_indexes = track["conf"]["options"]["bam"]["bam_index"] if not isinstance(real_indexes, list): real_indexes = [real_indexes] @@ -1150,7 +1148,7 @@ bam_index=real_indexes[i], ) elif dataset_ext == "cram": - real_indexes = track["conf"]["options"]["cram"]["cram_indices"][ + real_indexes = track["conf"]["options"]["cram"]["cram_index"][ "cram_index" ] if not isinstance(real_indexes, list): |