| Previous changeset 20:14facf79b652 (2014-06-20) Next changeset 22:2680041530ec (2014-06-20) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml |
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| diff -r 14facf79b652 -r 7b71d14e0f78 tool_dependencies.xml --- a/tool_dependencies.xml Fri Jun 20 04:52:48 2014 -0400 +++ b/tool_dependencies.xml Fri Jun 20 05:05:25 2014 -0400 |
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| @@ -18,10 +18,19 @@ </action> <action type="shell_command">unzip pindel-master.zip -d pindel</action> <action type="shell_command">cd master</action> --> - <action type="shell_command">sed '50d' Makefile</action> + <!-- <action type="shell_command">sed '50d' Makefile</action> --> <!-- <action type="shell_command">make Makefile.local</action> --> + <action type="shell_command"> + echo "SAMTOOLS= + THREADS= + COLOUSINGBD15_TIME=60 + COLOWOBD15_TIME=80 + SIM1CHRVS20305_TIME=60" >> Makefile.local + </action> <action type="shell_command">make SAMTOOLS=~/samtools THREADS=2</action> <!-- <action type="shell_command">./INSTALL ~/samtools</action> --> + + <action type="move_file"> <source>pindel</source> <destination>$INSTALL_DIR/</destination> |