| Previous changeset 67:ba33b94637ca (2019-01-29) Next changeset 69:fefaaa19f30b (2019-01-29) |
|
Commit message:
Uploaded |
|
modified:
wrapper.sh |
| b |
| diff -r ba33b94637ca -r 7b9481fa4a70 wrapper.sh --- a/wrapper.sh Tue Jan 29 03:54:09 2019 -0500 +++ b/wrapper.sh Tue Jan 29 04:41:57 2019 -0500 |
| b |
| @@ -72,7 +72,7 @@ echo "---------------- class identification ----------------" echo "---------------- class identification ----------------<br />" >> $log -python $dir/gene_identification.py --input $PWD/summary.txt --output $outdir/identified_genes.txt +python2 $dir/gene_identification.py --input $PWD/summary.txt --output $outdir/identified_genes.txt echo "---------------- merge_and_filter.r ----------------" echo "---------------- merge_and_filter.r ----------------<br />" >> $log @@ -198,7 +198,7 @@ echo "---------------- shm_csr.py ----------------" echo "---------------- shm_csr.py ----------------<br />" >> $log -python $dir/shm_csr.py --input $outdir/merged.txt --genes $classes --empty_region_filter "${empty_region_filter}" --output $outdir/hotspot_analysis.txt +python2 $dir/shm_csr.py --input $outdir/merged.txt --genes $classes --empty_region_filter "${empty_region_filter}" --output $outdir/hotspot_analysis.txt echo "---------------- aa_histogram.r ----------------" echo "---------------- aa_histogram.r ----------------<br />" >> $log |