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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pacu commit 4290547cefb0459595f28fbba063f2cf58b35086 |
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added:
macros.xml pacu_snp.xml test-data/NC_002695.2-sample.bed test-data/NC_002695.2-subset.fasta test-data/TIAC1151-R10-ds.bam test-data/TIAC1151-R10-ds.bam.bai test-data/TIAC1151-ont.gz test-data/TIAC1151.bam test-data/TIAC1151.bam.bai test-data/TIAC1151_1P.fastq.gz test-data/TIAC1151_2P.fastq.gz test-data/TIAC1153.bam test-data/TIAC1153.bam.bai test-data/TIAC1638-R9-ds.bam test-data/TIAC1638-R9-ds.bam.bai test-data/TIAC1660.bam test-data/TIAC1660.bam.bai test-data/mapped_reads-ilmn.bam test-data/mapped_reads-ont.bam test-data/mapped_reads_trimmed-ilmn.bam test-data/mapped_reads_trimmed-ont.bam |
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| diff -r 000000000000 -r 7ba3e44093c9 macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Aug 13 13:45:25 2024 +0000 |
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| @@ -0,0 +1,28 @@ +<macros> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@VERSION@">pacu_snp</requirement> + <yield/> + </requirements> + </xml> + + <xml name="version_command"> + <version_command><![CDATA[PACU --version]]></version_command> + </xml> + + <token name="@VERSION@">0.0.5</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">21.01</token> + + <xml name="xrefs"> + <xrefs> + <xref type='bio.tools'>pacu</xref> + </xrefs> + </xml> + + <xml name="citations"> + <citations> + <citation type="doi">10.1128/jcm.01576-23</citation> + </citations> + </xml> +</macros> |
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| diff -r 000000000000 -r 7ba3e44093c9 pacu_snp.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pacu_snp.xml Tue Aug 13 13:45:25 2024 +0000 |
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| @@ -0,0 +1,137 @@ +<tool id="pacu_snp" name="PACU" version="@VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> + <description>whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro='xrefs'/> + <expand macro="requirements"/> + <expand macro="version_command"/> + <command detect_errors="exit_code"> + <![CDATA[ + PACU_galaxy + + ## Input files + --ref-fasta '$input.ref_fasta' + --ref-fasta-name '$input.ref_fasta.element_identifier' + + #for $bam in $input.bam_ilmn: + #if $bam: + --bam-ilmn $bam '$bam.element_identifier' + #end if + #end for + + #for $bam in $input.bam_ont: + #if $bam: + --bam-ont $bam '$bam.element_identifier' + #end if + #end for + + ## Excluded regions + #if $input.ref_bed: + --ref-bed $input.ref_bed + #end if + + ## Tree building method + #if $params.tree_method == 'mega': + --use-mega + #end if + + ## Other parameters + --min-global-depth $params.min_global_depth + $params.skip_gubbins + + ## Output files + --output-html '$html' + --output '$html.files_path' + + ## Variant filters + --min-snp-af $filtering.min_snp_af + --min-snp-qual $filtering.min_snp_qual + --min-snp-depth $filtering.min_snp_depth + --min-snp-dist $filtering.min_snp_dist + + ## Other options + --threads \${GALAXY_SLOTS} + ]]> + </command> + <inputs> + <!-- Input files --> + <section name="input" title="Input files" expanded="true"> + <param argument="--ref-fasta" type="data" format="fasta" label="Reference genome"/> + <param argument="--bam-ilmn" type="data" format="bam" multiple="true" optional="true" + label="BAM files (Illumina)" + help="Make sure the reads are mapped to the reference selected above."/> + <param argument="--bam-ont" type="data" format="bam" multiple="true" optional="true" label="BAM files (ONT)" + help="Make sure the reads are mapped to the reference selected above."/> + <param argument="--ref-bed" type="data" format="bed" optional="true" label="Excluded regions BED file" help="BED file with (pro)phage or other regions in the reference genome to be omitted from the SNP analysis."/> + </section> + + <!-- Parameters --> + <section name="params" title="Parameters" expanded="False"> + <param name="tree_method" type="select" label="Tree building method" + help="MEGA is not part of the Conda installation and may be unavailable."> + <option value="iqtree" selected="true">IQ-TREE</option> + <option value="mega">MEGA X</option> + </param> + <param argument="--skip-gubbins" type="boolean" label="Skip Gubbins" checked="false" + truevalue="--skip-gubbins" falsevalue="" + help="Skips recombination detection using Gubbins, this option can be used to work with fragmented reference genomes."/> + <param argument="--min-global-depth" type="integer" label="Min. global depth" value="5" min="0" max="100" + help="Minimum depth across all samples for a position to be included in the SNP analysis."/> + </section> + + <!-- Variant filtering --> + <section name="filtering" title="Variant filters" expanded="false"> + <param argument="--min-snp-af" type="float" value="0.66" min="0.0" max="1.0" label="Min. allele frequency"/> + <param argument="--min-snp-depth" type="integer" value="5" min="0" label="Min. depth"/> + <param argument="--min-snp-qual" type="integer" value="50" min="0" max="255" label="Min. SNP quality"/> + <param argument="--min-snp-dist" type="integer" value="10" min="0" max="100" + label="Min. distance between SNPs"/> + </section> + </inputs> + + <outputs> + <data name="html" format="html" label="PACU (${input.ref_fasta.element_identifier})"/> + </outputs> + <tests> + <test> + <section name="input"> + <param name="ref_fasta" value="NC_002695.2-subset.fasta"/> + <param name="bam_ilmn" value="TIAC1151.bam,TIAC1153.bam,TIAC1660.bam"/> + <param name="bam_ont" value="TIAC1638-R9-ds.bam,TIAC1151-R10-ds.bam"/> + </section> + <section name="params"> + <param name="tree_method" value="iqtree"/> + </section> + <output name="html" ftype="html"> + <assert_contents> + <has_text text="PACU report"/> + </assert_contents> + </output> + </test> + <test> + <section name="input"> + <param name="ref_fasta" value="NC_002695.2-subset.fasta"/> + <param name="ref_bed" value="NC_002695.2-sample.bed"/> + <param name="bam_ilmn" value="TIAC1151.bam,TIAC1153.bam,TIAC1660.bam"/> + <param name="bam_ont" value="TIAC1638-R9-ds.bam,TIAC1151-R10-ds.bam"/> + </section> + <section name="params"> + <param name="tree_method" value="iqtree"/> + </section> + <output name="html" ftype="html"> + <assert_contents> + <has_text text="PACU report"/> + </assert_contents> + </output> + </test> + </tests> + <help> + **Warning:** At least four input BAM files are required for bootstrapping (these can be a mix of Illumina / ONT + datasets). + + **Note:** You can use the *'PACU - mapping'* tool in Galaxy to map Illumina or ONT reads to the reference + genome. + </help> + <expand macro="citations"/> +</tool> |
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| @@ -0,0 +1,1 @@ +NC_002695.2 0 1000 |
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| diff -r 000000000000 -r 7ba3e44093c9 test-data/NC_002695.2-subset.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/NC_002695.2-subset.fasta Tue Aug 13 13:45:25 2024 +0000 |
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| b'@@ -0,0 +1,154 @@\n+>NC_002695.2 Escherichia coli O157:H7 str. Sakai DNA, complete genome\n+AAGTCATGATACCGCCGTAATAGGTCGGGATCGCCGCCTGATAAAAGCCAACGTCGCTGAAGTAATGGCT\n+GAGTTTGCGATGGCTGTCGATGGCTTCTTCCTGCTGTAAAAAGCAGACGCCGTTTTGTGCGACGAAGATA\n+CCGCCAGGATTCAGGCAACGTTTGCAGCCTTCATAAAATGCCGAAGTGAAAAGGCTTTCGCCGGGACCGA\n+TAGGATCGGTGCAGTCGGAGATAATGACATCAAAGGTCTGGCTGGTTTGATTAACGAAATTGACGCCATC\n+GTCGATCACCAGCTTAAAGCGCGGATCGTCGTAGCTACCGGCGTTATGGTTGGGTAGATACTGACGGCAG\n+AACGACACGACACCCGCATCGATTTCCACCATCGTGATTGACTCAACGTTTTTATGTCGGGTTACTTCAC\n+GCAGCATGGCACCGTCGCCGCCGCCGATAATCAGCACATGTTTCGCGTGACCGTGGGCCAGTAGCGGAAC\n+ATGGGTCATCATCTCATGATAGATAAACTCGTCGCGCTCGGTGGTTTGTACTACGCCATCCAGCGCCATT\n+ACGCGACCAAATGCAGCGTTCTCAAAAATGATCAGATCCTGGTGATCGGTCTTTTCATGATACAGAACGT\n+TATCTACCGCAAAGTACTGCCCAAACTGGTCGTGTAGCGTTTCATGCCACTGTTTTTTTTCGGCCATGGG\n+TTGATACCTCCTTTGTTAACACCCGTAAAAAAAGGGCGCAACATAATAGCTAACATTGACCGCGGATGCA\n+CGGTCAATATTTCTACAAAAAGGTATCAGGGATTATTTGACGTAGGCAAGCAGGCTTAAGGAATCGCGAG\n+CCAGGGCCTTGCACTTTTTAGCGACGGGAATGCCAATGCCGCTGAGATCGCGGTAGCTGTCTTCACCGAG\n+AGCTTTCATGTCGAAGGTGTCGTAATTACTGAGATCCCACTGGTTTTGCTGGGCGAAAAAGACCAGTGCG\n+CGACGAATTTGCCCGTTAGGTAAGTTCTGGTAACCACAATCGTTCTTCAGAAAGACAAAAACTGCCGTTA\n+AATCGGCCATATCTTCGGCTTCAGACTCACTGAGCGCGTAACTGTTTGCGCAAACGGCCATCAGGCTGCC\n+GAATAACACTGTTCTGAAAAACGTCTTCATTGCTTCTACCAGGGGCTTAAAGAAGATAAACGTTAGCACA\n+CTGCGAGCGAGGCGACGACCATTATTGTCGATTAAATTGTGTCTGCGGCTTGACCTTCCCGTAAGGGGAA\n+GGACTATGCTCAACGTTTGATTTTGTTTCGCCTGCTTAAGAATAAGGAAATAACTATGCAACGTCGTGAT\n+TTCTTGAAATATTCCGTCGCACTGGGTGTGGCTTCAGCCTTGCCACTGTGGAGCCGTGCAGTCTTTGCGG\n+CGGAACGCCCAACGTTACCGATCCCTGATTTGCTCACGACCGATGCCCGTAATCGCATTCAGTTAACTAT\n+TGGCGCAGGTCAGTCTACCTTTGGCGAGAAAACTGCAACTACCTGGGGCTATAACGGCAATCTGCTGGGG\n+CCGGCGGTGAAATTACAGCGCGGCAAAGCGGTAACGGTTGATATCTATAACCAACTGACGGAAGAGACGA\n+CGTTGCACTGGCACGGGCTGGAAGTACCGGGTGAAGTCGACGGCGGCCCACAGGGAATTATTCCGCCAGG\n+TGGCAAGCGCTCGGTGACGTTGAACGTTGATCAACCTGCCGCTACCTGCTGGTTCCATCCACATCAACAT\n+GGCAAGACCGGGCGACAGGTGGCGATGGGGCTGGCTGGTCTGGTGGTGATTGAAGATGACGAGATCCTGA\n+AATTAATGCTGCCAAAACAGTGGGGTATCGATGATGTTCCGGTGATCGTTCAGGATAAGAAATTTAGCGC\n+CGACGGGCAGATTGATTATCAACTGGATGTGATGACCGCCGCCGTGGGCTGGTTTGGCGATACGTTGCTG\n+ACCAACGGTGCAATCTACCCGCAACACGCTGCCCCGCGTGGTTGGCTGCGCCTGCGTTTGCTCAATGGCT\n+GTAATGCCCGCTCGCTCAATTTCGCCACCAGCGACAATCGCCCGCTTTATGTGATTGCCAGCGACGGTGG\n+TCTGCTACCTGAACCGGTGAAGGTGAACGAGCTGCCGGTGCTGATGGGCGAGCGTTTTGAAGTGCTGGTG\n+GAGGTTAACGACAACAAACCCTTTGACCTGGTGACGCTGCCGGTCAGCCAGATGGGGATGGCGATTGCGC\n+CGTTTGATAAGCCTCATCCGGTAATGCGGATTCAGCCGATTGCTATTAGTGCTTCCGGTGCTTTGCCAGA\n+CACATTAAGTAGCCTGCCTGCGTTACCTTCGCTGGAAGGGCTGACGGTACGCAAGCTGCAACTTTCTATG\n+GACCCGATGCTCGATATGATGGGGATGCAGATGCTAATGGAGAAATATGGCGATCAGGCGATGGTCGGAA\n+TGGATCACAGCCAGATGATGGGCCATATGGGGCACGGCAATATGAATCATATGAACCACGGCGGGAAGTT\n+CGATTTCCACCATGCCAATAAAATCAACGGTCAGGCGTTTGATATGAATAAGCCGATGTTTGCGGCGGCG\n+AAAGGGCAGTACGAACGTTGGGTTATCTCTGGCGTGGGCGACATGATGCTGCATCCGTTCCATATTCACG\n+GCACGCAGTTCCGTATCTTGTCAGAAAATGGCAAACCGCCAGCGGCTCATCGCGCGGGCTGGAAAGATAC\n+CGTTAAGGTCGAAGGCAATGTCAGTGAAGTGCTGGTGAAGTTTAATCACGACGCACCGAAAGAACGTGCT\n+TATATGGCGCACTGCCATCTGCTGGAGCATGAAGATACGGGGATGATGTTAGGGTTTACGGTATAAAAAG\n+ACCGTATTCGGGAATATGCCCGGATCTCTCCGGGCATTAAACTGATGACAAACGCAAATCTGCCTGATGC\n+GCTACGCTTATCAGGCCTACGTTACCTGTGCAATCCATTGATTTTGCACAATTTTGTAGGCTGGATAAGG\n+CGTTCACGCCGCATCCGGCATGAACAACGCGCACGTTGTCAGCAATCTGAGCAAGTCTTACTTCACATCA\n+TCCGGCAGCGCATAAGCCACAATATAGTCACCCATCTTCGTACCAAATGAACCGTGACCGCCTGCGGAGA\n+TCACCACATACTGCTTACCATTCACTTCATAGGTCATTGGCGTCGCCTGACCACCCGCTGGTAAACGACC\n+CTGCCACAGTTTTTCACCGTTGCTCATGTTGTAAGCGCGCAGGTAGTTATCTGCCGTAGCGGCGATAAAC\n+AGCACGTTACCCGCCGTGGAGATTGGCCCGCCCAGCATCGGCATACCCATATTGAACGGCACCGGTACAG\n+GCATCGGGAACGGCATACTGTCCTGCGGCGTACCAATACGTTTCTTCCACACCACTTCATTAGTTTTCAG\n+ATCCAGCGCCGAGATATAACCCCATGCTGGCTGTTTACATGGCAGACCAAATGGTGAGAGGAACGGGTTG\n+AGCGTGACACCATACGGTACACCGTACTGTGGCTGAATGCCGGATTCCGTACCCGTGCCTTTGGCATCTT\n+TCGGCTGCTCCATCGGGTTACCCGGACCGCGTGGGATCAGTTTCGAAACAAACGGCAGTGCCATTGGGTT\n+GGCAATTGCCACTTCACGATTTGGATCAACGGAAATCCCGCCCCATTCAAACATTCCCAGGTTACCCGGG\n+AAGACCAGCGTGCCCTGTTCAGATGGCGGCGTGAAAATGCCTTCATAGCGCATCTGGTGGAACATCACGC\n+GGCACACCAGTTGGTCAAACA'..b'TTCTCAAAAAACCCGGGATCCTCTTCCACCAGCATTTTTG\n+ACCATAGTGCATTGTTGCTGATGAGTGTATCTATGTCTTTCATGGAGGTTAACGACCTGTAACCAAATAA\n+TTACGTTTGGCTAATATAGGGCAACTCCGGGACGATTTAAACCACAGATAAAGTGTAAGAACGTAAGGTA\n+AGTAAAAATTTATGACCATTGCACTGGAACTTCAACAGCTTAAAAAAAACTATCCAGGCGGCGTTCAGGC\n+GCTTCGTGGAATAGATTTGCAGGTCGAAGCGGGTGATTTTTATGCGCTTCTCGGGCCGAACGGGGCCGGG\n+AAATCGACCACTATCGGTATTATCAGCTCTCTGGTAAATAAAACCTCCGGGCGGGTCAGCGTATTTGGTT\n+ACGATCTCGAGAAAGATGTCGTGAACGCTAAACGTCAGTTGGGACTGGTGCCGCAGGAATTTAACTTCAA\n+CCCGTTTGAAACCGTGCAGCAAATTGTGGTGAATCAGGCAGGGTACTACGGTGTGGAGCGCAAAGAGGCG\n+TACATCCGCAGCGAAAAATATCTTAAGCAGCTCGATTTATGGGGAAAACGCAACGAACGTGCGCGCATGT\n+TATCTGGCGGGATGAAGCGCCGTTTAATGATTGCCCGTGCGTTAATGCATGAACCTAAACTACTGATTCT\n+CGACGAGCCGACTGCAGGCGTGGATATTGAACTTCGCCGCTCAATGTGGGGCTTTTTGAAGGATTTAAAC\n+GACAAAGGCACCACCATCATTCTCACCACACACTACCTGGAAGAAGCAGAAATGCTGTGCCGCAATATCG\n+GCATTATTCAACACGGTGAGCTGGTGGAAAATACCTCGATGAAGGCGCTGCTGGCGAAGCTGAAATCGGA\n+AACCTTTATTCTCGATCTCGCACCGAAAAGTCCGTTACCGAAGCTCGATGGCTATCAGTATCGACTGGTC\n+GATACCGCGACGCTGGAAGTTGAAGTGCTGCGTGAGCAGGGGATCAACAGCGTATTTACGCAGTTAAGTG\n+AGCAGGGCATTCAGGTATTAAGTATGCGTAACAAAGCTAACCGTCTGGAAGAGCTGTTTGTTTCACTGGT\n+TAATGAAAAACAAGGAGATCGCGCATGATGCATCTTTACTGGGTGGCGCTAAAAAGCATCTGGGCGAAAG\n+AGATCCATCGCTTTATGCGTATCTGGGTGCAGACGCTGGTGCCGCCAGTCATCACCATGACCCTTTACTT\n+TATTATTTTCGGTAACCTGATTGGTTCGCGTATTGGCGATATGCATGGCTTCAGCTACATGCAGTTCATC\n+GTACCGGGGCTGATCATGATGTCGGTGATCACCAACGCCTACGCCAACGTCGCGTCATCATTTTTTGGTG\n+CCAAGTTCCAGCGTAATATTGAAGAGCTGCTGGTAGCGCCGGTTCCGACTCACGTCATTATTGCCGGATA\n+TGTCGGCGGTGGCGTGGCGCGTGGTCTGTTTGTTGGCATTCTGGTGACGGCAATTTCACTGTTTTTTGTG\n+CCGTTTCAGGTGCATTCGTGGGTATTCGTTGCCTTAACCCTGGTGCTCACGGCGGTGTTGTTCTCCCTTG\n+CGGGTTTGCTGAACGGTGTGTTTGCCAAAACGTTCGATGACATCAGCCTGGTGCCAACCTTTGTGTTAAC\n+GCCACTCACGTATTTGGGTGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCG\n+CACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTCCTCGGTATCAATGATGTTCCGC\n+TGGTCACTACCTTTGGCGTACTGGTGGTCTTTATTGTGGCGTTTTATTTGATCTGTTGGTCGCTGATCCA\n+ACGTGGACGTGGTTTGCGTAGCTAAGGCTATTTCCTCTCCTCTGGATTTGGGGGAGAGGAGTTTTGACGG\n+CTATCACCCTTTATCAACAATGGTCAGGGTAGACTGATTTTCGGCTAAGGAGGAAGGCGATGTTAGGTTG\n+GGTAATTACCTGTCACGATGACCGGGCGCAAGAGATACTGGATGTGCTGGAGAAAAAACATGGGGCGCTT\n+CTTCAGTGCCGGGCCGTGAATTTCTGGCGCGGATTAAGTTCTAATATGCTCAGCCGCATGATGTGCGATG\n+CTCTGCATGAAGCGGACTCTGGTGAGGGTGTCATCTTCTTAACCGATATAGCCGGAGCGCCACCGTACCG\n+CGTGGCTTCATTATTAAGCCACAAACACTCCCGTTGCGAAGTGATTTCTGGTGTCACGTTACCGTTAATT\n+GAACAGATGATGGCTTGCCGTGAAACCATGACCAGTTCAGAGTTTCGCGAGCGTATTGTCGAACTGGGTG\n+CGCCGGAGGTGAGTAGTATTTGGCACCAGCAACAAAAAAATCCGCCTTTCGTCCTCAAACATAATTTGTA\n+TGAGTATTAACCCGCGATTCTGATGGCGCTTTTGCTACAATAAAAGCGTTGTTTCACCCTCGGTGATTTT\n+TTCATGTACAAACAAGCTGTTATTCTCCTGCTGATGCTGTTTACCGCAAGTGTCAGTGCCGCGTTACCTG\n+CCCGTTATATGCAAACCATCGAAAATGCTGCGGTCTGGGCGCAAATTGGTGACAAGATGGTGACCGTGGG\n+GAATATTCGGGCCGGACAAATCATTGCCGTGGAGCCCACTGCCGCAAGTTATTACGCATTTAATTTTGGC\n+TTTGATAAAGGGTTTATCGATAAAGGTCATCTTGAGCCGGTTCAGGGGCGACAAAAAGTTGAAGACGGTT\n+TGGGTGACCTCAACAAGCCGCTGAGTAATCAGAACTTAGTTACCTGGAAAGATACGCCGGTCTATAACGC\n+GCCGAGTGTGGGCAGTGCGCCATTTGGGGTACTGGCGGACAATTTGCGCTACCCGATTTTGCATAAACTG\n+AAAGACAGGTTAAATCAAACCTGGTATCAGATCCGTATTGGCGATCGACTGGCCTATATCAGCGCGCTGG\n+ATGCCCAACCCGATAATGGCCTTCCGGTGCTAACCTATCACCATATTCTGCGCGACGAAGAAAACACCCG\n+TTTTCGCCATACTTCGACGACCACCTCGGTACGCGCTTTCAATAACCAGATGGCCTGGCTGCGCGACAGG\n+GGATACGCGACACTGAGCATGGTGCAGCTGGAAGGTTACGTGAAGAATAAGATCAATCTTCCTGCGCGAG\n+CGGTGGTGATTACCTTTGATGATGGCCTCAAGTCAGTGAGCCGCTATGCGTATCCTGTGTTGAAACAATA\n+TGGCATGAAGGCGACGGCGTTTATTGTTACCTCGCGCATCAAACGTCACCCGCAGAAGTGGGAACCAAAA\n+TCGCTGCAATTTATGAGCGTTTCTGAGCTTAACGAAATTCGCGATGTATTTGATTTCCAGTCACATACCC\n+ATTTTTTGCATCGGGTAGATGGTTATCGCCGACCCATATTACTGAGCCGTAGTGAGCACAATATTCTGTT\n+TGATTTTGCACGTTCACGTCGCGCTCTGGCGCAATTTAATCCGCATGTCTGGTATCTTTCGTATCCGTTT\n+GGCGGCTTTAATGACAAAGCCGTGAAGGCAGCAAACGATGCCGGATTTCACCTGGCGGTGACAACCATGA\n+AAGGCAAAGTAAAACCGGGGGATAATCCGTTGTTACTAAAACGACTTTATATCTTAAGAACGGATTCGCT\n+GGAGACGATGTCGCGGCTGGTGAGTAACCAGCCGCAGGGATAACAATCAAGCAACCTGTACCGGAATCGC\n+TTTCGCGGTACGTTTCATTTCATTGTCGCCTTCAAAATAGGCGACGTTGGGTCGCCAGGTGCGAGCTTCT\n+TCATCTGGCATGGTAACGAAGCTGGCGATGATGACAATATCGCCGACACTGGCGCAGTGGGCCGCCGC\n' 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