| Previous changeset 3:021f0ef9474f (2013-09-18) Next changeset 5:c2055dd1927b (2014-04-24) |
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Commit message:
Add temporary hack until my galaxy stdout/stderr UTF-8 bug is fixed. |
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modified:
get_pubchem/get_pubchem_as_smiles.py get_pubchem/get_pubchem_as_smiles.xml |
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| diff -r 021f0ef9474f -r 7c1f9962ac07 get_pubchem/get_pubchem_as_smiles.py --- a/get_pubchem/get_pubchem_as_smiles.py Wed Sep 18 09:44:36 2013 -0400 +++ b/get_pubchem/get_pubchem_as_smiles.py Fri Sep 27 15:51:46 2013 -0400 |
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| @@ -29,7 +29,7 @@ result.get() for filename in os.listdir(td): - path = os.path.join(td, filename) + '.smi' + path = os.path.join(td, filename) shutil.copyfileobj(open(path, 'rb'), output_handle) output_handle.close() |
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| diff -r 021f0ef9474f -r 7c1f9962ac07 get_pubchem/get_pubchem_as_smiles.xml --- a/get_pubchem/get_pubchem_as_smiles.xml Wed Sep 18 09:44:36 2013 -0400 +++ b/get_pubchem/get_pubchem_as_smiles.xml Fri Sep 27 15:51:46 2013 -0400 |
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| @@ -7,6 +7,8 @@ get_pubchem_as_smiles.py -o $pubchem_smi -p 4 + ## temporary hack until my Galaxy patch is committed + > /dev/null 2>&1 </command> <stdio> <regex match="obError" |