Repository 'metaquantome_db'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/metaquantome_db

Changeset 1:7c45aa1c9464 (2020-09-23)
Previous changeset 0:f1834b310c09 (2019-04-25) Next changeset 2:85b8866f06d7 (2020-11-24)
Commit message:
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit 74c403057350af3dde81aea154414a0d6a84d2a3"
modified:
macros.xml
test-data/ec_ttest_tested.tab
test-data/func_full_test_out.tab
test-data/tax_test_out.tab
b
diff -r f1834b310c09 -r 7c45aa1c9464 macros.xml
--- a/macros.xml Thu Apr 25 13:47:16 2019 -0400
+++ b/macros.xml Wed Sep 23 17:03:13 2020 +0000
b
@@ -1,6 +1,6 @@
 <macros>
-    <token name="@VERSION@">1.0.0</token>
-    <token name="@GVERSION@">1.0.0-0</token>
+    <token name="@VERSION@">2.0.0</token>
+    <token name="@GVERSION@">2.0.0-0</token>
     <xml name="requirements">
         <requirements>
           <requirement type="package" version="@VERSION@">metaquantome</requirement>
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diff -r f1834b310c09 -r 7c45aa1c9464 test-data/ec_ttest_tested.tab
--- a/test-data/ec_ttest_tested.tab Thu Apr 25 13:47:16 2019 -0400
+++ b/test-data/ec_ttest_tested.tab Wed Sep 23 17:03:13 2020 +0000
b
@@ -1,4 +1,4 @@
-id description s1_mean s2_mean int1 int2 int3 int4 int5 int6 int1_n_peptide int2_n_peptide int3_n_peptide int4_n_peptide int5_n_peptide int6_n_peptide int1_n_samp_children int2_n_samp_children int3_n_samp_children int4_n_samp_children int5_n_samp_children int6_n_samp_children log2fc_s1_over_s2 p corrected_p
+id description s1_mean s2_mean int1 int2 int3 int4 int5 int6 int1_n_peptide int2_n_peptide int3_n_peptide int4_n_peptide int5_n_peptide int6_n_peptide int1_n_samp_children int2_n_samp_children int3_n_samp_children int4_n_samp_children int5_n_samp_children int6_n_samp_children log2fc_s1_over_s2 p_s1_over_s2 corrected_p_s1_over_s2
 1.-.-.- Oxidoreductases. 10.013089999440444 3.5443205162238103 9.965784284662089 10.228818690495881 9.813781191217037 3.584962500721156 3.700439718141092 3.3219280948873617 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 6.468769483216634 2.70286875006428e-06 9.46004062522498e-06
 1.2.-.- Acting on the aldehyde or oxo group of donors. 10.013089999440444 3.5443205162238103 9.965784284662089 10.228818690495881 9.813781191217037 3.584962500721156 3.700439718141092 3.3219280948873617 1.0 1.0 1.0 1.0 1.0 1.0 NA NA NA NA NA NA 6.468769483216634 2.70286875006428e-06 9.46004062522498e-06
 3.-.-.- Hydrolases. 5.28540221886225 11.475564566327488 5.0 5.6438561897747235 5.1292830169449655 11.778077129535358 10.980853606379736 11.555547771647065 2.0 2.0 2.0 2.0 2.0 2.0 1.0 1.0 1.0 1.0 1.0 1.0 -6.190162347465239 4.742887028677606e-05 5.533368200123874e-05
b
diff -r f1834b310c09 -r 7c45aa1c9464 test-data/func_full_test_out.tab
--- a/test-data/func_full_test_out.tab Thu Apr 25 13:47:16 2019 -0400
+++ b/test-data/func_full_test_out.tab Wed Sep 23 17:03:13 2020 +0000
b
@@ -1,4 +1,4 @@
-id name namespace NS_mean WS_mean X730NS X730WS X733NS X733WS X734NS X734WS X737NS X737WS X760NS X760WS X769NS X769WS X781NS X781WS X795NS X795WS X852NS X852WS X861NS X861WS X866NS X866WS X867NS X867WS X730NS_n_peptide X730WS_n_peptide X733NS_n_peptide X733WS_n_peptide X734NS_n_peptide X734WS_n_peptide X737NS_n_peptide X737WS_n_peptide X760NS_n_peptide X760WS_n_peptide X769NS_n_peptide X769WS_n_peptide X781NS_n_peptide X781WS_n_peptide X795NS_n_peptide X795WS_n_peptide X852NS_n_peptide X852WS_n_peptide X861NS_n_peptide X861WS_n_peptide X866NS_n_peptide X866WS_n_peptide X867NS_n_peptide X867WS_n_peptide X730NS_n_samp_children X730WS_n_samp_children X733NS_n_samp_children X733WS_n_samp_children X734NS_n_samp_children X734WS_n_samp_children X737NS_n_samp_children X737WS_n_samp_children X760NS_n_samp_children X760WS_n_samp_children X769NS_n_samp_children X769WS_n_samp_children X781NS_n_samp_children X781WS_n_samp_children X795NS_n_samp_children X795WS_n_samp_children X852NS_n_samp_children X852WS_n_samp_children X861NS_n_samp_children X861WS_n_samp_children X866NS_n_samp_children X866WS_n_samp_children X867NS_n_samp_children X867WS_n_samp_children log2fc_NS_over_WS p corrected_p
+id name namespace NS_mean WS_mean X730NS X730WS X733NS X733WS X734NS X734WS X737NS X737WS X760NS X760WS X769NS X769WS X781NS X781WS X795NS X795WS X852NS X852WS X861NS X861WS X866NS X866WS X867NS X867WS X730NS_n_peptide X730WS_n_peptide X733NS_n_peptide X733WS_n_peptide X734NS_n_peptide X734WS_n_peptide X737NS_n_peptide X737WS_n_peptide X760NS_n_peptide X760WS_n_peptide X769NS_n_peptide X769WS_n_peptide X781NS_n_peptide X781WS_n_peptide X795NS_n_peptide X795WS_n_peptide X852NS_n_peptide X852WS_n_peptide X861NS_n_peptide X861WS_n_peptide X866NS_n_peptide X866WS_n_peptide X867NS_n_peptide X867WS_n_peptide X730NS_n_samp_children X730WS_n_samp_children X733NS_n_samp_children X733WS_n_samp_children X734NS_n_samp_children X734WS_n_samp_children X737NS_n_samp_children X737WS_n_samp_children X760NS_n_samp_children X760WS_n_samp_children X769NS_n_samp_children X769WS_n_samp_children X781NS_n_samp_children X781WS_n_samp_children X795NS_n_samp_children X795WS_n_samp_children X852NS_n_samp_children X852WS_n_samp_children X861NS_n_samp_children X861WS_n_samp_children X866NS_n_samp_children X866WS_n_samp_children X867NS_n_samp_children X867WS_n_samp_children log2fc_NS_over_WS p_NS_over_WS corrected_p_NS_over_WS
 GO:0000015 phosphopyruvate hydratase complex cellular_component 25.886058501686048 27.75998767351391 26.063085341729952 26.75868414835451 26.872321573535828 27.714535507520914 25.66138683343686 26.91922948200433 24.56792307320876 27.02361179346473 26.027647781700306 28.016086841596714 26.02628222102915 27.691319718917903 26.16224176931668 28.14922479286621 25.58935659144236 28.605803973702113 24.96556438729523 27.182932679501942 26.61887047167179 28.06289719214795 23.98035185379387 28.471187733625282 25.803186314724893 26.966628159317192 9.0 12.0 9.0 21.0 7.0 12.0 12.0 15.0 9.0 16.0 6.0 10.0 20.0 15.0 12.0 16.0 9.0 13.0 9.0 19.0 13.0 12.0 11.0 16.0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.8739291718278608 4.146041132679973e-05 0.0005099643033035255
 GO:0000027 ribosomal large subunit assembly biological_process 24.93071577771554 25.59199706393845 24.79502406577661 24.90569362782595 24.98653026336489 25.54103884489353 23.235856648559913 25.931788552669854 25.039623407494012 25.45976392090486 24.544491045410794 25.52182426968223 25.141851834365106 25.289466690231773 25.900937208609022 25.935471942444728 24.03595672520859 26.011397107654144 24.664753825097794 25.84980444944989 24.843398416694487 25.350436246047447 25.80464628461343 25.501822202499124 24.28178647007801 25.41548110918182 14.0 6.0 12.0 32.0 12.0 12.0 20.0 11.0 24.0 15.0 21.0 13.0 25.0 15.0 17.0 16.0 26.0 17.0 19.0 11.0 26.0 12.0 15.0 15.0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.6612812862229092 0.00268017172806849 0.006910856026093958
 GO:0000036 acyl carrier activity molecular_function 25.95712476206603 26.279571177686467 26.5301700656991 25.713248274935196 23.51705029509677 23.162225189828625 25.71677865632887 27.34753252356737 24.76249594346933 27.104656358315633 25.695589715923877 27.215607058954525 25.964407715885855 25.376217309281692 24.710785124891835 24.76949157731373 26.583389308611466 26.855652944530483 27.299615071207107 26.21417524637679 25.987672484095224 25.62275900338784 25.498246974021807 25.479528439599648 25.891370301559785 26.106957744939113 8.0 5.0 4.0 6.0 9.0 8.0 9.0 6.0 7.0 8.0 8.0 5.0 5.0 5.0 11.0 6.0 9.0 8.0 8.0 7.0 9.0 6.0 8.0 10.0 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.32244641562043697 0.6033317722918665 0.6716842567531217
b
diff -r f1834b310c09 -r 7c45aa1c9464 test-data/tax_test_out.tab
--- a/test-data/tax_test_out.tab Thu Apr 25 13:47:16 2019 -0400
+++ b/test-data/tax_test_out.tab Wed Sep 23 17:03:13 2020 +0000
b
@@ -1,4 +1,4 @@
-id taxon_name rank NS_mean WS_mean X730NS X730WS X733NS X733WS X734NS X734WS X737NS X737WS X760NS X760WS X769NS X769WS X781NS X781WS X795NS X795WS X852NS X852WS X861NS X861WS X866NS X866WS X867NS X867WS X730NS_n_peptide X730WS_n_peptide X733NS_n_peptide X733WS_n_peptide X734NS_n_peptide X734WS_n_peptide X737NS_n_peptide X737WS_n_peptide X760NS_n_peptide X760WS_n_peptide X769NS_n_peptide X769WS_n_peptide X781NS_n_peptide X781WS_n_peptide X795NS_n_peptide X795WS_n_peptide X852NS_n_peptide X852WS_n_peptide X861NS_n_peptide X861WS_n_peptide X866NS_n_peptide X866WS_n_peptide X867NS_n_peptide X867WS_n_peptide X730NS_n_samp_children X730WS_n_samp_children X733NS_n_samp_children X733WS_n_samp_children X734NS_n_samp_children X734WS_n_samp_children X737NS_n_samp_children X737WS_n_samp_children X760NS_n_samp_children X760WS_n_samp_children X769NS_n_samp_children X769WS_n_samp_children X781NS_n_samp_children X781WS_n_samp_children X795NS_n_samp_children X795WS_n_samp_children X852NS_n_samp_children X852WS_n_samp_children X861NS_n_samp_children X861WS_n_samp_children X866NS_n_samp_children X866WS_n_samp_children X867NS_n_samp_children X867WS_n_samp_children log2fc_NS_over_WS p corrected_p
+id taxon_name rank NS_mean WS_mean X730NS X730WS X733NS X733WS X734NS X734WS X737NS X737WS X760NS X760WS X769NS X769WS X781NS X781WS X795NS X795WS X852NS X852WS X861NS X861WS X866NS X866WS X867NS X867WS X730NS_n_peptide X730WS_n_peptide X733NS_n_peptide X733WS_n_peptide X734NS_n_peptide X734WS_n_peptide X737NS_n_peptide X737WS_n_peptide X760NS_n_peptide X760WS_n_peptide X769NS_n_peptide X769WS_n_peptide X781NS_n_peptide X781WS_n_peptide X795NS_n_peptide X795WS_n_peptide X852NS_n_peptide X852WS_n_peptide X861NS_n_peptide X861WS_n_peptide X866NS_n_peptide X866WS_n_peptide X867NS_n_peptide X867WS_n_peptide X730NS_n_samp_children X730WS_n_samp_children X733NS_n_samp_children X733WS_n_samp_children X734NS_n_samp_children X734WS_n_samp_children X737NS_n_samp_children X737WS_n_samp_children X760NS_n_samp_children X760WS_n_samp_children X769NS_n_samp_children X769WS_n_samp_children X781NS_n_samp_children X781WS_n_samp_children X795NS_n_samp_children X795WS_n_samp_children X852NS_n_samp_children X852WS_n_samp_children X861NS_n_samp_children X861WS_n_samp_children X866NS_n_samp_children X866WS_n_samp_children X867NS_n_samp_children X867WS_n_samp_children log2fc_NS_over_WS p_NS_over_WS corrected_p_NS_over_WS
 157 Treponema genus 22.4592368471399 23.25164166545661 21.782210465654984 22.29366320170161 19.506474847066862 18.393389679254238 21.31060467932299 21.728055628093554 20.480986062363687 22.602867980613627 23.203993721974225 23.566696765176243 22.313857374707805 25.335612959036755 24.564206593926965 23.758132985051397 21.865153582932077 21.378622826723475 22.004619704258204 23.01330290131711 21.929889350172612 22.77047366650371 22.145836211855425 22.482730706742693 22.080359413733433 23.436551973678235 9.0 3.0 2.0 2.0 6.0 11.0 8.0 10.0 10.0 10.0 7.0 5.0 15.0 9.0 4.0 6.0 8.0 13.0 12.0 6.0 5.0 5.0 14.0 8.0 5.0 2.0 2.0 1.0 4.0 6.0 4.0 4.0 5.0 5.0 4.0 2.0 4.0 3.0 3.0 1.0 4.0 3.0 5.0 3.0 3.0 2.0 6.0 4.0 -0.7924048183167116 0.10596880912720232 0.22157114635687755
 194 Campylobacter genus 22.737726781977898 23.402014527754694 19.374983778535537 20.606446832930114 22.374052312423657 22.175914745445667 20.710711088017703 21.497720060388442 21.935778024142905 21.360868814816588 19.67510328882646 18.442382745355207 21.21818802567592 18.98249372666148 25.95861986611441 24.365465047288765 19.540072068600086 22.271211580494718 17.998259192791753 26.353858284366478 18.911902395646823 20.233239126385538 19.83361162568149 19.261402979800614 20.129527247691183 22.479579021998745 3.0 5.0 2.0 5.0 2.0 7.0 25.0 5.0 7.0 4.0 17.0 3.0 209.0 8.0 4.0 9.0 4.0 8.0 3.0 5.0 7.0 4.0 7.0 6.0 2.0 2.0 2.0 3.0 2.0 4.0 2.0 3.0 2.0 2.0 3.0 2.0 4.0 4.0 2.0 3.0 2.0 4.0 2.0 3.0 2.0 2.0 2.0 4.0 -0.6642877457767966 0.27265646879500405 0.41807325215233954
 286 Pseudomonas genus 22.84530963528067 20.941262344966106 19.390653532195216 21.257892314732068 23.40900039680405 21.249447306145736 22.85533086446144 17.189270329854693 21.43373289557238 18.940290665716926 21.2755581152792 21.78465732920301 19.42254043551283 17.888724701002317 22.016714341281943 20.86953224363516 18.685241717022148 22.54333528743205 20.234005329853034 18.807506861121887 23.765290496984004 16.805950901945454 25.39397860675149 22.523625447598253 19.404033335324762 14.425011898222733 2.0 4.0 2.0 7.0 11.0 3.0 4.0 6.0 7.0 4.0 4.0 2.0 16.0 8.0 2.0 7.0 5.0 5.0 6.0 3.0 6.0 4.0 5.0 1.0 1.0 1.0 1.0 2.0 3.0 NA 2.0 2.0 2.0 2.0 2.0 NA 3.0 3.0 2.0 3.0 3.0 1.0 2.0 NA 3.0 NA 2.0 1.0 1.9040472903145655 0.06467168750236378 0.15657355921624916