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Commit message:
README first |
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added:
README |
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| diff -r f8c679b63816 -r 7c4e86de7d19 README --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Thu Dec 21 06:06:38 2017 -0500 |
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| @@ -0,0 +1,34 @@ +#################################################################### + How ton install Tax4Fun wrapper ? +#################################################################### + + +1 - Add Tax4Fun files (xml, perl and R) in tools directory +Create a sm_Tax4Fun/ directory in tools/ +Get Tax4Fun files in this new directory + + +2 - Add Tax4Fun wrapper in your Tool Menu + +Add TAX4FUN wrapper in your tool_conf.xml file : +geany ../../my_config/my_tool_conf.xml & +in your FROGS section: +<tool file="my_tools/sm_Tax4Fun/sm_Tax4Fun.xml" /> + + +3 - Create a symbolique link for the R script +ln -s /path/to/tools/sm_Tax4Fun/sm_Tax4Fun.R /path/to/bin/scripts_R/. +and add the path in your galaxy.ini file : +[workPath] +SCRIPTS_R_path=/galaxydata/galaxy-preprod/my_bin/scripts_R/ + + +4 - Change pah to SILVA123 in sm_Tax4Fun.xml file + + <param name="reference" type="select" label="Folder location of the unzipped reference data"> + <option value="/Path/to/sm_Tax4Fun/SILVA123/">SILVA123</option> + <option value="No">OTHER TODO</option> +</param> + + + |