| Previous changeset 20:964a825270ff (2015-11-20) Next changeset 22:503f1c1bac0c (2016-01-12) |
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Commit message:
Uploaded |
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modified:
Bubblebeam_For_SAINT_wrapper.py |
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| diff -r 964a825270ff -r 7ce59d092bae Bubblebeam_For_SAINT_wrapper.py --- a/Bubblebeam_For_SAINT_wrapper.py Fri Nov 20 12:03:57 2015 -0500 +++ b/Bubblebeam_For_SAINT_wrapper.py Fri Nov 20 12:04:24 2015 -0500 |
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| @@ -18,8 +18,6 @@ bub_SAINT = sys.argv[13] bub_NSAF = sys.argv[14] ins_path =sys.argv[15] -#r_path = sys.argv[16] -#r_path = str(r_path) + r"bin/" if crapome == "None": crapome = "FALSE" @@ -30,7 +28,7 @@ elif label == "true": label = "TRUE" -cmd = str(ins_path) +r"/Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" " + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" " + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file) +cmd = r"Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" " + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" " + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file) os.system(cmd) time.sleep(3) |