| Next changeset 1:840822c1e84a (2023-03-20) |
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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blobtoolkit commit 7c0db48ffd4dbee68fb2320fc5a064bc9c3219d9 |
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added:
blobtoolkit.xml macros.xml test-data/assembly.fasta.gz test-data/assembly.yaml test-data/bam_file.bam test-data/blast_results.tabular test-data/busco_full_table.tabular test-data/contig.fasta test-data/reads.fastq test-data/small_taxdump.tar.gz test-data/test01_blobdir.tar.gz test-data/test02_blobdir.tar.gz test-data/test04_circle.png test-data/test04_cumulative.png test-data/test04_snail.png |
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| diff -r 000000000000 -r 7d9ee8cd14b8 blobtoolkit.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/blobtoolkit.xml Mon Jan 30 12:39:40 2023 +0000 |
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| b'@@ -0,0 +1,413 @@\n+<tool id="blobtoolkit" name="BlobToolKit" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">\n+ <description>genome assembly QC</description>\n+ <macros>\n+ <import>macros.xml</import>\n+ </macros>\n+ <expand macro=\'requirements\' />\n+ <command detect_errors="exit_code"><![CDATA[\n+ #if $mode_conditional.selector == \'create\'\n+ mkdir -p \'./Blobdir\' &&\n+ mkdir -p \'./taxdump\' &&\n+ ln -s \'${mode_conditional.taxdump}\' \'taxdump.tar\' &&\n+ tar -xf \'taxdump.tar\' -C \'./taxdump\' &&\n+ ln -s \'${mode_conditional.fasta}\' \'assembly.fasta\' &&\n+ #if $mode_conditional.meta\n+ ln -s \'${mode_conditional.meta}\' \'assembly.yaml\' &&\n+ #end if\n+ blobtools create\n+ --fasta \'assembly.fasta\'\n+ #if $mode_conditional.meta\n+ --meta \'assembly.yaml\'\n+ #end if\n+ --taxid $mode_conditional.taxid\n+ --taxdump \'./taxdump\'\n+ \'./Blobdir\'\n+ && cp -r \'./taxdump\' \'./Blobdir/\'\n+ && tar -zcf \'./Blobdir.tgz\' \'./Blobdir\'\n+\n+ #else if $mode_conditional.selector == \'add\'\n+ #if $mode_conditional.blobdir.is_of_type("tgz")\n+ tar -zxf \'${mode_conditional.blobdir}\' -C \'./\' &&\n+ #else\n+ tar -xf \'${mode_conditional.blobdir}\' -C \'./\' &&\n+ #end if\n+ #if $mode_conditional.busco\n+ ln -s \'${mode_conditional.busco}\' \'./busco_results.tab\' && \n+ #end if\n+ #if $mode_conditional.blast_input.selector == \'enabled\'\n+ ln -s \'$mode_conditional.blast_input.hits\' \'./blast_results.tab\' &&\n+ #end if\n+ #if $mode_conditional.cov\n+ ln -s \'$mode_conditional.cov\' \'./input.bam\' &&\n+ ln -s \'$mode_conditional.cov.metadata.bam_index\' \'./input.bam.bai\' &&\n+ #end if\n+ #if $mode_conditional.bed\n+ mkdir -p \'./bed_files\' &&\n+ #import re\n+ #for $i, $input in enumerate($mode_conditional.bed):\n+ #set $safename = re.sub(\'[^\\w\\-_]\', \'_\', $input.element_identifier) + "." + str($i)\n+ ln -sf \'${input}\' \'./bed_files/${safename}.bed\' &&\n+ #end for\n+ #end if\n+ blobtools add\n+ --threads \\${GALAXY_SLOTS:-8}\n+ --taxdump \'./Blobdir/taxdump\'\n+ #if $mode_conditional.busco\n+ --busco \'./busco_results.tab\'\n+ #end if\n+ #if $mode_conditional.blast_input.selector == \'enabled\'\n+ --hits \'./blast_results.tab\'\n+ #if $mode_conditional.blast_input.hits_cols\n+ --hits-cols \'${$mode_conditional.blast_input.hits_cols}\'\n+ #end if\n+ --taxrule $mode_conditional.blast_input.taxrule\n+ --evalue $mode_conditional.blast_input.evalue\n+ --hit-count $mode_conditional.blast_input.hit_count\n+ --bitscore $mode_conditional.blast_input.bitscore\n+ #end if\n+ #if $mode_conditional.bed\n+ --beddir \'./bed_files\'\n+ #end if\n+ #if $mode_conditional.cov\n+ --cov \'./input.bam\'\n+ #end if\n+ #if $mode_conditional.fasta\n+ --fasta \'${mode_conditional.fasta}\'\n+ #end if\n+ #if $mode_conditional.trnascan\n+ --trnascan \'${mode_conditional.trnascan}\'\n+ #end if\n+ #if $mode_conditional.text_input.selector == \'enabled\'\n+ --text \'${mode_conditional.text_input.text}\'\n+ --text-cols \'${mode_conditional.text_input.text_cols}\'\n+ $mode_conditional.text_input.text_header\n+ '..b'ditional[\'selector\'] == \'plots\'</filter>\n+ <change_format>\n+ <when input="$mode_conditional.format" value="svg" format="svg"/>\n+ </change_format>\n+ </data>\n+ </outputs>\n+ <tests>\n+ <test expect_num_outputs="1">\n+ <conditional name="mode_conditional">\n+ <param name="selector" value="create"/>\n+ <param name="fasta" value="assembly.fasta.gz"/>\n+ <param name="meta" value="assembly.yaml"/>\n+ <param name="taxid" value="801"/>\n+ <param name="taxdump" value="small_taxdump.tar.gz"/>\n+ </conditional>\n+ <output name="blobdir" file="test01_blobdir.tar.gz" compare="sim_size" delta="1000"/>\n+ </test>\n+ <test expect_num_outputs="1">\n+ <conditional name="mode_conditional">\n+ <param name="selector" value="add"/>\n+ <param name="blobdir" value="test01_blobdir.tar.gz"/>\n+ <param name="busco" value="busco_full_table.tabular"/>\n+ <param name="cov" value="bam_file.bam"/>\n+ <param name="fasta" value="contig.fasta"/>\n+ <section name="advanced_options">\n+ <param name="update_plot" value="false"/>\n+ </section>\n+ <conditional name="blast_input">\n+ <param name="selector" value="enabled"/>\n+ <param name="hits" value="blast_results.tabular"/>\n+ <param name="taxrule" value="bestsum"/>\n+ <param name="evalue" value="1"/>\n+ <param name="bitscore" value="1"/>\n+ <param name="hit_count" value="10"/>\n+ <param name="hits_cols" value="1=qseqid,2=staxids,3=bitscore,5=sseqid,10=qstart,11=qend,14=evalue"/>\n+ </conditional>\n+ </conditional>\n+ <output name="blobdir" file="test02_blobdir.tar.gz" compare="sim_size" delta="1000"/>\n+ </test>\n+ <test expect_num_outputs="1">\n+ <conditional name="mode_conditional">\n+ <param name="selector" value="filter"/>\n+ <param name="blobdir" value="test02_blobdir.tar.gz"/>\n+ <section name="filter_options">\n+ <param name="fasta" value="contig.fasta"/>\n+ <param name="summary_rank" value="phylum"/>\n+ <param name="invert" value="false"/>\n+ </section>\n+ <section name="remove_options">\n+ <param name="remove_selector" value="--all"/>\n+ </section>\n+ </conditional>\n+ <output name="blobdir">\n+ <assert_contents>\n+ <has_size value="672428" delta="1000"/>\n+ </assert_contents>\n+ </output>\n+ </test>\n+ <test expect_num_outputs="3">\n+ <conditional name="mode_conditional">\n+ <param name="selector" value="plots"/>\n+ <param name="blobdir" value="test02_blobdir.tar.gz"/>\n+ <param name="format" value="png"/>\n+ </conditional>\n+ <output name="plot_circle" file="test04_circle.png" ftype="png"/>\n+ <output name="plot_cumulative" file="test04_cumulative.png" ftype="png"/>\n+ <output name="plot_snail" file="test04_snail.png" ftype="png"/>\n+ </test>\n+ </tests>\n+ <help><![CDATA[\n+ BlobToolKit is a software suite to aid researchers in identifying and isolating non-target data in draft and publicly available genome assemblies. It can be used to process assembly, \n+ read and analysis files for fully reproducible interactive exploration in the browser-based Viewer. BlobToolKit can be used during assembly to filter non-target DNA, helping researchers produce assemblies with high biological credibility.\n+ ]]></help>\n+ <expand macro="citations"/>\n+</tool>\n\\ No newline at end of file\n' |
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| diff -r 000000000000 -r 7d9ee8cd14b8 macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon Jan 30 12:39:40 2023 +0000 |
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| @@ -0,0 +1,47 @@ +<macros> + <token name="@TOOL_VERSION@">3.4.0</token> + <token name="@VERSION_SUFFIX@">0</token> + + <xml name="requirements"> + <requirements> + <container type="docker">genomehubs/blobtoolkit:@TOOL_VERSION@</container> + </requirements> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1534/g3.119.400908</citation> + </citations> + </xml> + <xml name="macro_text_input" > + <conditional name="text_input"> + <param name="selector" type="select" label="Genetic text file" help="Include a genetic text file as input"> + <option value="enabled">Enabled</option> + <option value="disabled" selected="true">Disabled</option> + </param> + <when value="enabled"> + <param argument="--text" type="data" format="txt" label="Generic text file"/> + <param argument="--text-cols" type="text" value="" label="Column specification" help="Example: 1=identifiers,2,3=score,total=total_score"> + <sanitizer invalid_char=""> + <valid initial="string.letters,string.digits"> + <add value="_" /> + <add value="," /> + <add value="=" /> + <add value="-" /> + <add value="#" /> + </valid> + </sanitizer> + <validator type="regex">[0-9a-zA-Z=,_#-]+</validator> + </param> + <param argument="--text-header" type="boolean" truevalue="--text-header" falsevalue="" checked="false" label="Text has header row" help="Set the flag if a text file contains a header row" /> + <param argument="--text-delimiter" type="select" label="Text delimiter" help="Character used as delimiter in the text file"> + <option value=",">Comma</option> + <option value="\t">Tabulation</option> + <option value="whitespace">Whitespace</option> + </param> + <yield/> + </when> + <when value="disabled"/> + </conditional> + + </xml> +</macros> \ No newline at end of file |
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| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/assembly.fasta.gz |
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| Binary file test-data/assembly.fasta.gz has changed |
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| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/assembly.yaml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/assembly.yaml Mon Jan 30 12:39:40 2023 +0000 |
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| @@ -0,0 +1,9 @@ +assembly: + accession: GCA_018777385.1 + alias: Candidatus Symbiopectobacterium + bioproject: PRJEB12068 + biosample: SAMN17910462 + record_type: assembly +taxon: + name: SAMN17910462 + id: 801 \ No newline at end of file |
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| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/bam_file.bam |
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| Binary file test-data/bam_file.bam has changed |
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| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/blast_results.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blast_results.tabular Mon Jan 30 12:39:40 2023 +0000 |
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| @@ -0,0 +1,2 @@ +NZ_JAFJYB010000008.1 P08504.1 87.030 771 98 1 108971 111277 222 992 0.0 1402 gi|136134|sp|P08504.1|TNP5_ECOLX 3628 671 721 2 93.51 2 0 VVYETDRLNAIESLALPDGIALSVHQNRLLKLAREGRKMSSRDLAKFTDIRRYASLVCIISEARATLTDEVIDLHERILGSLFNRAKRTQAERLQQTGKLIQSKLKQFITVGQALLNARESGEDPWAAIEDVIPWQEFINSVEETRFLSRKDNFDPLHLITEKYSTLRKYAPRMLSALQFRAAPAAIQLSDALDTVREMYRKQLRKVPSSAPIGFIPESWRKVVITPSGIDRKYYEFCVLNELKGALRSGDIWVKGSRRYRNFDDYLIPSDDFEKSLRDNQLSLAILTDCHEY--NRMTLLASRLEEVNTMALAGDLPDVDISDKGVKITPLDNSVPSAASPFADLVYGMLPHPKITEMLDEVDGWTGFTRHFTHLKNNHVRPKDRKLLLTTILADGINLGLTKMAESCPGTTKLSLEGIQAWYIRDETYSAALAELVNAQKKRHLSAFWGDGTTSSSDGQNFLVGSHGRYAGQVNLKYGQEPGVQIYTHISDQYSPFYTKVISRVRDSTHVLDGLLYHESDLEITEHYTDTAGFTEHVFALMHLLGFAFAPRIRDLHDKRIFIHGKAERYPGLQSVISTTQLNLKDIETHWNEVLRLASSIKQGTVTASLMMKKLASYPKQNGLVKALREIGRIERTLFMLD*FRDPSLRRRVQAGLNKGEARNALARAVFMHRLGEVRDLGPENQNYWASGLTLLTAVISLWNTVYIERAIDSLRRKGLPINEQLISHLSPLGWEHINLSGDYVWRTNLKLGQGKYRSLRSVDSGLYKK VLQHIDRLNSIAALGLPDGITLSIHQNRLLKLAREGRKMSSRDLAKFTDVRRYATLVCVIQEAQATLTDEVIELHERILGTLFSRAKRTQAERLQLTGKLIQSKLKQYVTVGQALLHARESGEDPWAAIEDVLPWQEFINSLEETQFLSRKGNFDPLHLITEKYSTLRKYAPRMLSALQFIATPPAQTLSDALDTIRDMYRKQLRKVPPAAPTGFIPESWRKLVLTPSGIDRKYYEFCVMNELKGALRSGDIWVKGSRRYRNFDDYLIPAAEFEKSRHNDQLQLAVQTDCRAYLQARMTLLASRLEEVNAMALAGDLPDVDISDKGVKITPLENSVPSGASPFADLVYGMLPHPKITEILEEVDNWTGFTRHFAHLKNNNVRPKDGRLLLTTILADGINLGLTKMAESCPGATKSSLEGIQAWYIRDETYSAALAELVNAQKARPLAAFWGDGTTSSSDGQNFRVGSHGRYAGQVNLKYGQEPGVQIYTHISDQYSPFYAKVISRVRDSTHVLDGLLYHESDLEITEHYTDTAGFTEHVFALMHLLGFAFAPRIRDLHDKRLFIHGKAERYPGLQSVISTTSLNIKDIEAHWDEILRLAASIKQGTVTASLMIKKLASYPKQNGLAKALREIGRIERTLFMLDWFRDPGLRRRVQAGLNKGEARNALARAVFMHRLGEIRDRGLENQSYRASGLTLLTAAITLWNTVYIERAIESLKRKGIPINNQLVSHLSPLGWEHINLSGDYVWRNNIKLGSGKYRSLRTVDTELYKK 148954 994 RecName: Full=Transposase for transposon Tn2501 +NZ_JAFJYB010000008.1 P27302.5 83.861 663 107 0 85932 87920 1 663 0.0 1110 gi|54042066|sp|P27302.5|TKT1_ECOLI 2872 556 610 0 92.01 3 0 MSSRKERANAIRALSMDGVQKAKSGHPGAPMGMADIAEVLWRDYLNHNPANPHWANRDRFVLSNGHASMLIYSLLHLTGYNLPIEELKNFRQLHSKTPGHPEYGYTDGVETTTGPLGQGIANAVGMALAERTLAAQFNRPGHDIVDHFTYVFMGDGCMMEGISHEVCSLAGTLKLGKLVAFYDDNGISIDGHVEGWFTDDTAARFEAYGWHVVRGVDGHDADAITRAIEQARAVTDKPSLLMCKTVIGFGSPNKAGTHDSHGAPLGDAEVAASREQLGWKYPPFEIPAEIYAAWDAKAAGAQKESVWNETFAAYARAYPELAAEFKRRTVGDLPANWQADAQKFIEDLQASPAKIASRKASQNALEAYGKLLPEFLGGSADLAPSNLTIWSGSVSRDKDPAGNYIHYGVREFGMTAIANGLALYGGFLPYTATFLMFVEYARNAVRMAALMKIRSIYVYTHDPIGLGEDGPTHQPVEQLASLRVTPNMSTWRPTDQVETAVAWKYAIERKDGPTALILSRQNLAQQARTAQQLADVAKGAYVLKDSDGQPDLILIATGSEVELAVAASDVLSAQGHKVRVVSMPSTDAFDKQDAAYREAVLPKAVSARVAIEAGIADYWYKYVGLNGAIVGMTSFGESAPAEKLFEVFGFTVDNVVAKASALL MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKELL 148954 663 RecName: Full=Transketolase 1; Short=TK 1 |
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| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/busco_full_table.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/busco_full_table.tabular Mon Jan 30 12:39:40 2023 +0000 |
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| @@ -0,0 +1,197 @@ +# BUSCO version is: 5.3.2 +# The lineage dataset is: archaea_odb10 (Creation date: 2021-02-23, number of genomes: 404, number of BUSCOs: 194) +# Busco id Status Sequence Gene Start Gene End Strand Score Length OrthoDB url Description +860at2157 Missing +1642at2157 Missing +3905at2157 Missing +6590at2157 Complete NZ_JAFJYB010000003.1 350058 352109 - 294.1 364 https://www.orthodb.org/v10?query=6590at2157 Methionine--tRNA ligase +6736at2157 Missing +7046at2157 Complete NZ_JAFJYB010000002.1 796689 798419 - 198.1 387 https://www.orthodb.org/v10?query=7046at2157 Arginine--tRNA ligase +7724at2157 Missing +7896at2157 Complete NZ_JAFJYB010000002.1 521516 524143 + 230.5 399 https://www.orthodb.org/v10?query=7896at2157 Alanine--tRNA ligase +8899at2157 Missing +8922at2157 Missing +10236at2157 Missing +13010at2157 Missing +13531at2157 Missing +13565at2157 Missing +14061at2157 Missing +14454at2157 Missing +14889at2157 Missing +17053at2157 Missing +17629at2157 Missing +18705at2157 Missing +19750at2157 Fragmented NZ_JAFJYB010000001.1 942014 943066 - 36.0 113 https://www.orthodb.org/v10?query=19750at2157 ATPase +21317at2157 Missing +22545at2157 Missing +22747at2157 Fragmented NZ_JAFJYB010000001.1 563445 564428 + 232.3 231 https://www.orthodb.org/v10?query=22747at2157 phenylalanine--tRNA ligase subunit alpha +22842at2157 Missing +23182at2157 Missing +23221at2157 Missing +24257at2157 Missing +24288at2157 Missing +25592at2157 Missing +25871at2157 Complete NZ_JAFJYB010000002.1 529172 530533 + 231.0 344 https://www.orthodb.org/v10?query=25871at2157 signal recognition particle protein +29893at2157 Missing +30130at2157 Missing +31316at2157 Fragmented NZ_JAFJYB010000002.1 770147 771136 + 138.9 205 https://www.orthodb.org/v10?query=31316at2157 Dihydroorotate dehydrogenase +31722at2157 Missing +32079at2157 Missing +32191at2157 Missing +32623at2157 Missing +35648at2157 Complete NZ_JAFJYB010000008.1 72373 73671 + 270.4 266 https://www.orthodb.org/v10?query=35648at2157 Adenylosuccinate synthetase +35861at2157 Missing +36028at2157 Missing +37207at2157 Missing +37299at2157 Complete NZ_JAFJYB010000003.1 83351 84868 + 371.7 386 https://www.orthodb.org/v10?query=37299at2157 Amidophosphoribosyltransferase +39322at2157 Complete NZ_JAFJYB010000002.1 861947 863317 - 291.9 395 https://www.orthodb.org/v10?query=39322at2157 Adenylosuccinate lyase +41214at2157 Missing +41305at2157 Complete NZ_JAFJYB010000008.1 61495 63021 + 186.3 366 https://www.orthodb.org/v10?query=41305at2157 Bifunctional NAD(P)H-hydrate repair enzyme +43727at2157 Missing +44076at2157 Missing +46017at2157 Complete NZ_JAFJYB010000002.1 437560 438723 + 225.2 353 https://www.orthodb.org/v10?query=46017at2157 Phosphoglycerate kinase +47919at2157 Complete NZ_JAFJYB010000001.1 1093397 1094671 + 232.2 356 https://www.orthodb.org/v10?query=47919at2157 Histidine--tRNA ligase +48934at2157 Missing +50844at2157 Complete NZ_JAFJYB010000001.1 245664 246425 + 196.6 205 https://www.orthodb.org/v10?query=50844at2157 di-trans,poly-cis-decaprenylcistransferase +51351at2157 Missing +52427at2157 Missing +54988at2157 Complete NZ_JAFJYB010000001.1 959054 960073 + 146.3 218 https://www.orthodb.org/v10?query=54988at2157 S-methyl-5-thioribose-1-phosphate isomerase +55024at2157 Missing +56027at2157 Missing +57545at2157 Missing +58019at2157 Missing +58022at2157 Missing +58340at2157 Missing +59062at2157 Missing +59314at2157 Complete NZ_JAFJYB010000001.1 745036 745983 + 111.3 169 https://www.orthodb.org/v10?query=59314at2157 Ribose-phosphate pyrophosphokinase +59861at2157 Missing +60366at2157 Missing +60670at2157 Missing +60954at2157 Missing +61613at2157 Missing +61936at2157 Missing +62508at2157 Complete NZ_JAFJYB010000003.1 214280 215317 - 137.7 179 https://www.orthodb.org/v10?query=62508at2157 Phosphoribosylformylglycinamidine cyclo-ligase +63341at2157 Missing +64860at2157 Missing +65833at2157 Missing +66209at2157 Missing +66811at2157 Missing +69351at2157 Missing +70269at2157 Missing +70525at2157 Missing +70865at2157 Missing +72726at2157 Missing +73593at2157 Missing +74812at2157 Missing +75288at2157 Missing +76134at2157 Missing +76877at2157 Missing +78046at2157 Missing +79065at2157 Missing +79845at2157 Missing +80498at2157 Missing +80501at2157 Missing +80629at2157 Missing +82104at2157 Missing +82755at2157 Missing +82853at2157 Missing +83050at2157 Missing +84219at2157 Missing +84684at2157 Complete NZ_JAFJYB010000002.1 717347 719023 + 127.1 387 https://www.orthodb.org/v10?query=84684at2157 Translation initiation factor 2 subunit alpha +85023at2157 Missing +85279at2157 Missing +85293at2157 Missing +87367at2157 Missing +87520at2157 Missing +88531at2157 Complete NZ_JAFJYB010000003.1 105180 105644 + 65.6 96 https://www.orthodb.org/v10?query=88531at2157 6,7-dimethyl-8-ribityllumazine synthase +89321at2157 Missing +89943at2157 Missing +90096at2157 Missing +90641at2157 Missing +90817at2157 Complete NZ_JAFJYB010000001.1 1045496 1049383 + 71.6 176 https://www.orthodb.org/v10?query=90817at2157 phosphoribosylformylglycinamidine synthase I +90882at2157 Missing +91154at2157 Missing +91297at2157 Missing +91632at2157 Missing +91936at2157 Missing +92409at2157 Missing +92795at2157 Missing +93236at2157 Missing +93256at2157 Missing +94875at2157 Fragmented NZ_JAFJYB010000001.1 247306 248658 + 65.3 255 https://www.orthodb.org/v10?query=94875at2157 PDZ domain-containing protein +94889at2157 Missing +95578at2157 Missing +96138at2157 Missing +97230at2157 Missing +98179at2157 Missing +98187at2157 Missing +98221at2157 Missing +98657at2157 Complete NZ_JAFJYB010000002.1 444459 445115 + 149.0 181 https://www.orthodb.org/v10?query=98657at2157 Ribose-5-phosphate isomerase A +99236at2157 Missing +99734at2157 Complete NZ_JAFJYB010000002.1 505471 506289 - 135.2 173 https://www.orthodb.org/v10?query=99734at2157 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase +99842at2157 Missing +101957at2157 Missing +102178at2157 Missing +102360at2157 Missing +102399at2157 Missing +103467at2157 Missing +104254at2157 Missing +104636at2157 Missing +104702at2157 Fragmented NZ_JAFJYB010000002.1 442619 442915 + 14.8 65 https://www.orthodb.org/v10?query=104702at2157 GHMP kinase +104786at2157 Missing +105095at2157 Missing +105165at2157 Missing +105421at2157 Missing +105604at2157 Missing +105851at2157 Missing +106462at2157 Complete NZ_JAFJYB010000001.1 1088327 1088758 + 126.1 121 https://www.orthodb.org/v10?query=106462at2157 Nucleoside diphosphate kinase +106603at2157 Missing +107015at2157 Missing +107212at2157 Missing +107993at2157 Missing +108145at2157 Missing +108717at2157 Missing +109335at2157 Missing +110798at2157 Missing +111803at2157 Missing +112466at2157 Missing +112720at2157 Missing +113971at2157 Missing +114285at2157 Missing +114541at2157 Missing +115384at2157 Missing +115425at2157 Missing +115808at2157 Fragmented NZ_JAFJYB010000003.1 268875 270056 + 56.1 143 https://www.orthodb.org/v10?query=115808at2157 Geranylgeranyl reductase +115947at2157 Missing +116294at2157 Missing +116732at2157 Missing +116879at2157 Fragmented NZ_JAFJYB010000002.1 490837 491310 + 59.6 80 https://www.orthodb.org/v10?query=116879at2157 Peptidyl-prolyl cis-trans isomerase +117225at2157 Missing +117241at2157 Missing +119044at2157 Missing +119723at2157 Missing +121171at2157 Missing +121548at2157 Missing +121943at2157 Missing +122290at2157 Missing +123463at2157 Missing +123503at2157 Missing +123853at2157 Missing +123859at2157 Missing +124073at2157 Missing +124429at2157 Missing +124805at2157 Missing +124913at2157 Missing +124973at2157 Missing +125162at2157 Missing +125788at2157 Missing +126193at2157 Missing +127293at2157 Missing +128227at2157 Missing +128960at2157 Missing +129321at2157 Missing +129447at2157 Missing +129924at2157 Missing +130316at2157 Missing +130364at2157 Missing +131584at2157 Missing |
| b |
| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/contig.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contig.fasta Mon Jan 30 12:39:40 2023 +0000 |
| b |
| b'@@ -0,0 +1,100 @@\n+>NZ_JAFJYB010000008.1 Candidatus Symbiopectobacterium endolongispinus isolate SYM 10, whole genome shotgun sequence\n+AGACGATGGAGTTGATTTGCCCTTCATCCAAGGCACGGCCAGGTTGCAAGTTCAACGTTACGGACGCAGAGGGTGCCCTC\n+TGTTCGCGAACAAACAGTGAGGGCTTAGGTATCGCCAGATGCACTCGTGCTGTTTGCACGGGTCCGAGCGTTTCAATGGT\n+CCGTGACAGTTCGCCTTCTAGCGCCCGCTGATAGTTGATCTGCTCGCTAAATTGGCTGATGCCAAACTTTTCCTGATCGA\n+GCAATTCAAAACCAACCGCCCCGCCTTTGGGAAGTCCCAGTTGAGCCAGGCGTAAACGGGTTTCATACACGTTTTTTGAA\n+GGGATCAGGATTGCACTGCCACCTTCAGCAAATCGGTAAGGGATATTTATTTTTGTCAGTTCGCTGACAATGGCTCCACC\n+ATCACGGTCATTGACGTTATTGTAGAGCACCCGGTAATCAGGGCCTTTTGCCCATAGTACCATAGCGACAACAATTGCAA\n+TTGCAGCGGCCGCCGCAACTAACAGGGGAATTTTAGGATTGGCGCGCAAGCGGTTGAGTATCTCGCCAAACCCTTTTCCA\n+CCGGACATAAAACCGGTTGCGGCGTTCATACTCGTCCTCTGCTTGGTTGTTGAGCGATAAAATTAACGTTGGTACGTAAC\n+AAAACAGCACTCCCTGATTGCGCAATCGTTAATACGTGCACCTACTTTTGTCAGCATAGTATTATTTTCCGTAACGGCAA\n+AAACGATGCTCCGATAAGGTGGCATTTTCCCCGTCTTTTACGCCTTTTAGGATAAGACTGATATGGTAGTTTAGTGCACT\n+GTGTTAATTGGGTGGTTTTTGTGCGATTAGGAAAAGTGGGGCAATAAGCCCCTTGTCGCAAAATCATTTGCGAAAGATGG\n+TGCTGTTGTGGGGCATTCCTGTCGGAAAAGGTGAGAGACAATGTCAGTTCAAGGTATTGAGAGCGTAGTGCAGCAATTGC\n+AGGCTACCGCGTTACAAGCGGGGAACAATCCTGGCGTTAAACCGACTATCGAACCTGGTTTTGCGAGTGAGCTAGAGTCT\n+GCATTGGATAACATTAGTGGCACTCAACAAGCCGCACGTGAGCAAGCGCAAAAGTTCACCTTGGGTACACCTGGCGTTGA\n+ATTGAATGATGTGATGGTGGATTTACAGAAATCCTCAATCAATATGCAAATGGGTATCCAGGTACGTAACAAGCTGGTTG\n+CTGCTTATCAGGAAATAATGAGTCTTTCCGTCTGAGCCGGTATCTGGCTAAATCGAGTTGGTAGGCTTCAGTGTAAAAAA\n+ACCATTCCGACGACGTCAGAATGGTTTTTTATTGCATGCGGCAAATTGCCCCGGCACCGTCACTCTTGAGGATTAATATT\n+GCCAGGAATAACACCTTGGGGTGAGAATTCACCGTAGGCTGCATTGACACTATGCTGCTTAACTGACGTTTGCATTAATG\n+AACTCAGCTCATCCATGCGTTTTTGCAGTAACTCTTTTATTTGCGCTTCACTTTCTACGATTTCTCGCAAAATTTTGCGA\n+AATTGCAACCGCATCACACTGTCCAGATTATCGGGGATCGGCATCTTGCTCAGATTCTCCACCGACTGGATGTAGATAAT\n+CTCTTGTTCGACCACTTCATCCCATGCGCCGTTGTTAGCCAGAGCCAATATATGTCGGCTCAGTAGCTGAAGCTGCTGAT\n+AATCCTTTAGCAGTTGCGAAGGCGTTGTCATTTATGCTGCTCCGCTCTGTACCGCTTGCGGTGTAGGGCCAATCTGGCGC\n+CAGGCATCAGAGATGCTGTTAAGCAATGTTTCAACTTCGTCGATAACTTTTGCATCATTATGCAAGTTGGCAATCATTAA\n+ACGTTGAACCATGTAATCATAAAGGGCTGCAAGATTCTCTGCCAACTCACCGCCTTTTTCTATGTCTAAGTCCGCTTTAA\n+GGCCATTCGTGATGATATCGATAGCTTTGGATAAAGCGTAACCTTTACCAGCAATATCATTCTGCTGTAATAAAATCCGC\n+GCACGGACCAACGCACTGCGCGCACCGTCAAAAAGCAGAACAATGAGCTGATGTGGGCTGGCGCTCATCACACTGCTTTC\n+CAGGCCAACTTGGGCATAGGCCTGGCTGCCGTTTCTGCTGTACATCAGTGACTTTCTCCATTAACTACCTTTTGTTTAAG\n+GCAGCGAGTTGTGTTGTCAGATAATCGCCGGTGCTATTCATTTTAGAAACCAACGTATCCAACTGGGCAAACTGTGCTTT\n+ATAGCGCGCAATAGTATCTTCGATACTTTGCTGAGTGAGATCGTAGGTTTTCTTAATGGTTTTCAGCGTCGCTGCAATAC\n+TGTCTTTCGCGGTTTGGATTGCCACTTTGCTGGAATCAAGAACGTTGTCTAAATAATTAGTGACTTGTGTAGCGTAGCCG\n+GTGGTTTTTCCATCGCCAACGAAGAAATCTAATACCTGACTGGAATTATCTGTCAGTGCAGTTGTTAGCTTATCGCTATC\n+AATCTCAAGCATGCCGGTTTTGGGGTTTTGTTTAACACCCATTTCGTTAAGCGTACTGATATCCATACCGCTCTGAGCGT\n+AGGAGATTTGTGTTTTCAGTGAGGTCTGGATACCTCTGACAGTACTGTTACCAAGCAATACACCGTTACTGGTGCTTTGT\n+GCATCAGAACCAGAATCTACCTCTGTGTATTTGGTCAAGGTACCAATTGTCGTCTGCAGTGCATTGTACGCATCGACGTA\n+ATTTTGAACGGCTGTCTTCATCGGTGCAATATCACTGGCGATTGATAATGTCTCTGATGAGTTCGTCGCTGTTTGGGGTT\n+TCAAGATTAGTGTAACGCCGTCAATAGCGTCAGAAATGTGTTACTTTGACGCTCAATCGTCATGCCATTGAGCTTTATTG\n+ATGCATTTTGCGCGGCAGTCTGCTGCGTCATTGCACCACTGCCAGCACCTGTATCGGAGGTATAATTCAATTTGCCATTC\n+AGCGTGCCATCACCGGTGACGCTGATAGTCATCTTGGCATCGGTGCCAGTGTCTTTGGCCGTGATAGACAAATAATAAGT\n+ATCGTCATCCACTTTGATGATACTCGCACCAACATTGCCATTAGCCTTATTAATTGCATCACGGATGCCCACTAATGATG\n+TTTGGTCATCGGTCAGTTTGATTTCAAGTGGTTTATCCTGACCTGGCTGGCTGATAGTTAGGGTCCGGGTATTGTTTTTT\n+GTCGCTGATCCCTGCTGTGCTGTATTGCTGGCAAATTCACCCGAGATCAAGGATTGCGCGGTAGCAAGTGTCTTCACTTC\n+TACACTGTAATTGCCGTTAGTTGCTTTGCTATCCGTTGTTGCAGTGAAGGCGGTATTGGTGCTGCTGACACTGGTTTTAT\n+TGATACTGCTTGCTTTGGTCAATGCTTCTGCGGCAGTGTTCAGCTTTTCTAGTGCACTCTTAAGGGTGTCAAAGGCTTTA\n+TCTCGGTTTTCTTAAAGCGTTTGTTGTGCCTTTACCGGGGTTAAGCGAGTCTGTTCATTGGTTGTTAATTGCGAAAGAAT\n+ATCGCTCATTTCGCTGGTGGAACCTGTGAAGCTGATGCTTGCCATGGTAATTCCTTATGAATAGGTTAATGCCTTCTAGA\n+AGCTTATCGGCAAATAATGAACAAAGTTTAGTATAATCTTTCAGTAGAACTGAGATGGCACGATGGCATCCGCTACAGCG\n+TATTTTAATCAGTAATCCACCTCGAAGGAAATTTTAAAAAATCATTAAAGCTTTTGAAAGGAGCGCCGATATCAGGTAGG\n+ACGGTGATG'..b'TGCTCGTAACGCCAACGACGGTATCTCAATCGCGCAGACTGCTGAAGGTTCTCTGAACGAAA\n+TCAACAACAACCTGCAACGTATCCGTGAACTGTCTGTTCAGGCGCGGAATGGTACTAACTCTGCATCTGACATCGACTCC\n+ATCCAGTCTGAAGTTAACCAACGTTTGGAAGAAATTGACCGCGTTGCTTCTCAGACTCAGTTCAACGGTATCAAAGTGCT\n+GTCCAAAACCAGTGCTGATACGTCTATTTCCATCCAGGTCGGTGCTAACGATAGAGAAACTATCAGCATCACCCTGAAAG\n+GCAACTCTGGCTGGAACAAATTTTATTCCGCTGGTTCTGCCGCTGCTTCTGGTGGTCAGGTTACTGTTTCCGGTACCGGT\n+ACTGCTGCTGGTCAACGTCAAGTTGGCGCGAAAGGTGTTGACGTTCTGGATACTACCGTATTGGCTGATGTTGACGCTGC\n+ACTGAAAGCCGTTGATACGCAACGTAGTGATCTGGGTGCGATTCAGAACCGTTTTGAATCCACCATCAATAACCTGAACA\n+ACACCGTAACTAACCTGACTGCTGCACGTAGCCGTATTGAAGATGCTGATGTGGCGACCGAAGTGTCTAACATGAGCAAA\n+AACCAGATTCTGCAACAGGCTGGTACTGCTGTATTGGCCCAAGCCAACCAGGTTCCGCAGACTGTTCTGTCTCTGCTGCG\n+TTAATTGCTATACTCAGTTTTCAAAGCCAGTCTCCGGGCTGGCTTTTTTTGTTTAAAAGCACAAGTTTTTATTTTTTACG\n+TTAGTGCCGGATAAACGGCTAGAAGAATAACGTCCTTGCTGGATTGTGCGTGTACCAAGGTTGATAGTCCACAGATTGGT\n+TTAATTGGGAGTTGGTCAAATGGCGGCTTTAGACAGTAAGTTGGACAACAAGAACAATAGTGACGTAAAGAACACCACGG\n+CTGAGGACATTGCTCCAACCCCAATGGAACGAGTCTATGGTTCGGTTGAACATATTCGGGCTGTTTCGTGGCTGTACGGC\n+ATCGACACTGTGCCTGCTGAATATTCGCGTACTTTAGTGCTTGGGTGTGAAGACGGATTAAACTTACTGCCTTTTGCCTC\n+CGCTTACCCTTCTGCGCAGATCGTTGGGGTCGAATTAGCATCAGAGCCTCTCCCTGAAAAACAGAAAAATGCAGATATCC\n+TGTTGCCGACCAACCTACATCTTTACAGTTTGTCTCTGGAGGCATTACTGGGCAACTCGTGGGAGAATTTTGATTACATC\n+ATTGTTCATGGGAGCTTTTCTCTGCTTGCCAATGAGGTGACCGATCTCTTGCTGGCGTTTTTTCAACAAAAGTTGAGTGC\n+GAAAGGCATTATTGCTCTAGATTGGTTTTGCCAGCCCGGAGCTAAATCCATGGAGGCACTACGCGATGCGATCCAACTTC\n+ACAGTTGTCGGGGAGAAAATTTTACCGAGCAAGTCGAGCAGGGAAAAGCGATGTTGTCTTGGCTTAATCAGGTATCCCCG\n+ATGTCAACTGCTACCGAAAGCAGTCTTGGCTTACCTCTGAAGAAAGCGAATGCACTGTCAGACGATTTATTCATACACTA\n+TTTTCTGGAAAGCAAAAACGAATCCAGTTATTTAGTCGAATTTAATAACCGTATCGAAAATTGCGGTTTGGCCTACGTGG\n+GTGATGTGAGGCCTGAAACAGAAACGCCCGATTTTTACAATAAAGCGTTAGATGAGCGGTGGCAGGATATCGCCTTTGGA\n+TGTGGAAAGGTGATGGGTCAGCAATATTTGGATATTGCAGTAAATCGTAGTCAGCGTTTTAGTTTATTGGTATCGCAGAG\n+TAGGGCTCCAGAAGTATCTGAACAGATTGATTATTCCCGATTGGCGGATATGCGTTGGGCTGGAGGGTTCCGCCGTCAGA\n+CTTCCGATCTTCGTGTTATTCATAACTCGCTCGCCAGTCATGATAGTGTCGCTGTTTCTACAGACAATATTCTGGCGATG\n+TGTATCCTTGACACCCTCGGAGATGCTTGGCCGTATAGTGTCAGCTTTGACCAACTCGTCTTTCATTATCGATTGCCAGA\n+TGATGATCCAGAATCGCCTTTTTCGGCCGATCTTGAGAAGAAAATAATCAATGCCCTGAAAGCATTGCTGAATAAAGGCA\n+TCTCAAGCCTCCATTTTCAGTTGGACAAAGATCGCCACAGTTTGTGCAATGAGCACCAAGTTGCAGCCAGCGAGAGTGTT\n+AAGCTCCAGTTGCAGAGTGCGCCAGGATCGCTGTCTGTGATTAATCTGTGGCAAGAAGTGGTGGGGCTTACGGAAGAAGA\n+ACGGGAACAACTGTTACTTCCAAGCTTAACCCTTACAGCAACCAACCGAACGTTGGTTGACAGCCTTCACCATAAAGGCG\n+TGTTAAATGCATCTGCACTGGGCTGGAAACGCTATTATCAGCAGGTCGCGCGCAATGCCGAATTGGTTGATCTTAATCGA\n+GTACCTTGTGCGTTATTACTGTTCTCCAGCGATGTTTCGGCAGGGGGATTCTATACTCGCACCTTTGAACTCCTGGCCAA\n+TGAAACAGATACAAACGCTGCGAATCAGGATGAAGACTCGATAGATGGTAAGTTGGTTGTTGAAATCAATAGTCTTCTGA\n+TTAAAAGTAAAAATGAAAAAGCGATCGCGCTGGTAGAGCATGAACGAGAGCGACTTCTGAAAACTATAAATGGTTGTTAT\n+TATTTATCACGATTTTATCGGCGGGTTGCGGATGATGCATCAACTGCACTGATGCTAACGCGTATATTATCTTATAACTC\n+AACGAGTTTATTTGTTTACTCAGGGTTGGCTATGGCGCTCTACCAACACCGAGTGTTTTGGACTGCTGGGCGGTTAGCCC\n+GTGCAATTTTGCGCTGTAACCGGAAAAGCTCGCCAGATTGGTTTTTGCTTGGACTCTTACATAAAGAGAGTAAAACATTA\n+GATCATGCCGAATACTGTGCACGACAGGCGATGGCATTAGTGCCAAATAGTCAGCAAATCGTTGGTCTATTGGGGGGATG\n+CCTTTGCGAACAGGCAAAGACCGATGAGGGAATTGCGTTTCTACGTAAAACGATAAGAGATCCGATTTCTGATTACTATG\n+TCTACAGCCAATTAGCATTTATTCTTTCTCACAGTAAAAATGCGACTGCCCAAGAGCTTATGGATTGTCATTTAGCCTAT\n+GCCAAAGGCGAAATGGCATGGGCAGCGCATCAGACGTTCGAAGGTTATCAACCTCTCGATAAATCTTTCGATAGGAAACT\n+GCGTATCGGTTTTGTATCTGGTGACCTTAGAGATTGGCATCCTGCGGGCTTTTTCTTCACACCGATTTGGGATAAGTTAG\n+ATCGGGAACAGTTTGAATTATACTGCTACAACAACAGCCCCTCCTATTTGTGCAATGCGGGTACGGATCACTTCGAAGCA\n+ACCGCAGATGCCTGGCGAGATATTCAACATGTCAACCCAATTGAATTAGCCGAAATGATAAAGACGGATAAGATTGATAT\n+ATTGATCGATCTTTCTGGGCATACCGGGTACAACCGGTTAAGTACCTTTGCGTTAAAACCTGCGCCGATACAAATTTCTT\n+GGGTTGGCTATCATGCTACCACGGGATTGCCTGTAATGGATTATTACGCGACTATTTTCCCTGTGGCGAAAGATCCCTTA\n+ATTGAGGCGCAATTTACGGGAAAATTGATCTACCTTTCTCTGCCGAATAGTTTTGACAACAAGGAAGCCACGATCCCCGT\n+CAACCCATTGCCCGCACTTAAGAACGGCTATTTCACCTTTGGCAGTTTCAACCGCCCGAATAAGGTCAATGATGATGTGT\n+TAGATGCGTGGGCGGAGATATTAAAACGCGTTCCAACGTCAAGAATGCGTATTGGCAACATGCCGAGCGCTATTTGGGCT\n' |
| b |
| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/reads.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/reads.fastq Mon Jan 30 12:39:40 2023 +0000 |
| b |
| b'@@ -0,0 +1,200 @@\n+@NZ_JAFJYB010000008.1_0_1/1 \n+GATCTAAAAGCTATATGGTTAAAGCTAGCAAAAGAAAGAGGGAATGAATAATACGTTCCAAATTGGAACAAGAGTCCACTATTGATAGTGGACTCTGTACGATTTTTAACCACCATATCCGCTAGGAAAGGTATCACTGAATGCCTGACGA\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000008.1_0_0/1 \n+CGTTATGCCTTGGTTAATGGGGTTGTTCGCAATGACTCTGGTGCCCAACTGGATTTGGGGCTGCAAGGCAAAGCGACCTTGGATGATGTGCGGCAGATTTTGTAACTGAAAGACAGCATTGAACACAGAATTTGGCCTACCTCGAAACCCG\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000009.1_0_0/1 \n+ATGAGGGCCAGGAGAGATGCATCGCCGCCGATACCATCATCGTCTGTGCAGAACAGGATTCACGGCGCGAGTTCTATGCGCCATTGCAGGCCAACTGGTGCGCCGTGCATCTGATTGGCGGTGCGGATGTCGCCGCCGAACTGGATGCCCG\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000009.1_0_1/1 \n+CTTAAGCAAGGAGTCGCCTTCCTTTCCTGATGGTGTGGCCAATTAAGGCCACACTGTTGGGTAGCATCTCGTGATAAAAATCACGCCTTGCGGCAGACGAACGTCTGCCGTTATTGGTAACCAATCACCACTACTTTGACCGTTTCGCTTA\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000010.1_0_1/1 \n+TAAACAGGTACTTATGCAGCTCGCTCTTGTCTTTGTGGCGCACATAGTGCGGGAAGTAATGTTCGACAAAATAGTCATACCCGCTGACCGGGTCGAATACGCGTGCGCGTCGTTCAGCTATGGCCGCCGCAGACGGGTCAAAACCAACACA\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000001.1_6_1/1 \n+GCGGTTATCCAGGTTGTAACGGTGTGCCAGCGTGATGGCAGCCGGGCCGATAAACTCAGGATTAAGGCCAAGCTGCGGGCACGCGGCGTAGCACAGGCCACAGTTGATGCAGTCGGAGAACTGATGGTATTTCGCCATTTGCGCCAGTGTC\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000001.1_7_0/1 \n+GCGATGGCGTGGCGATAAACGCTGTGCGTGAATGGGATGGCATTCCCTGGCAAGATAACGTGGACAAGCCAGCAATACTGCGCGCCAGTGAATGTAAGCGCCCGCTTACTAATAATTGGCGAGTGACCAGCTATTCTGGTTTACAACAGCA\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000001.1_6_0/1 \n+AGGATTGATCTCTGTGCCAGCCTCGCCAAAACAGTGGCGGCGGCTTGATGGAGACGGGTTTATACGCGTTGGTTGTTGTGGATTGCCTGCTTAGGCTGGCGTAAAATCCTTATTTGCGGCCTGCCAGATGATCCTCCTTTTGGGATCTCGC\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000001.1_8_1/1 \n+TGGCGCAGGCAGATGTCGGGCTGGCCATGAACCAGAGCACCGAGCTGGCACAGCAGGCGGCGGATGCGGTGTTGATGTAGGATAGTCTGCACGGCGTGGTGCTGGCGCGTGAACTGGCGCTGGAAGCGATGAAACTGGTGCACAGCAACAT\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000001.1_3_0/1 \n+TTGGCGAGCGGAGTCACGCGGCGTCAAACGCAGATACTGGGTGCTGAATTTCACTTGCTCATCATAGCGATAGTGCGTGAGATGATTAATGGTCAGTTTCATACCGTCTCCAGATAGGTTTGTCGCACGCTGTCAGCCAGCGCGTTGATTC\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000001.1_2_1/1 \n+CACCCACCTGCGTGCGACCTGTCGCGAGCAGAACCCGAAAACCTTCCACGAAGCGGCGCATCTGGGCGGCGACGTGAATATGGTGGCAGTGGTGAAAGCGATCCTGACGGAAGAATCACGCCGTAAAGCGGCGGGCGATCCGCGTACGATT\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000001.1_4_1/1 \n+GCGAACAGGGCACGCCACAGTACGGCAATGGCTACGCTACTACCGAGAATAGACGGTACATAGTAAGCAGTACGGAAGAAACCGATACCACGCAATTTGAAATTGAGCACAAATGCAATAAGCAGTGCGAAAATCAATTTCAACGGAATGG\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII'..b'GTTTTTTATCGCCATGTCAGTGCAAATCTGGATACCCGCTTATTTGCATCGCGTTTTTGCGCTCACCAATCCGCAGGCTTCAGGCTTTTTGGCGCAGGTGTTGCTGTATACGT\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000003.1_2_0/1 \n+CAGTAATAAAAATTTCTGATTTTAAGACGTATTGAATACGTAATTGAAATTTCCAAGAGGTGAGGTATGTCAGGTGTAACTATAAATTTAAATGTTGCAGCTCCTTATTTATCTCTAAAAGAATATGCCAGAGTAACCGGCATACCCTTTG\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000003.1_4_0/1 \n+TGGGATCACATCGAAGTCCGCGCCAAAGAGGAAAGCCAACGCGAAGAGATTCGCGATGCGTTAACCCGTATTCCCGGCATTCATCATATTCTGGACGTTGAAGACCACGCTTACACCGACGTGCACGACATTTTTGAACAAACGTTGGCGC\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000003.1_4_1/1 \n+TCCTGTTACTTTCTCGTCGATGGGGGCAATTAAGCCTATGGCATCGGTCGGCTCAAAAATTGTAATGGCGTCTCAATTATAGAACCGCGCATTAAAAATGAAAACCATGGGATGTTAACAATACCGTCCCCATAAAGAAAGTGAGCATTCG\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000003.1_3_0/1 \n+TGGCTTTAATGGATATTCCGGATAGCTCACTGATTTTACTGTTATTTAGTCCATGTTTGTAGCCCCATAATACCTCCCGCTCGCGTGGACTGAGGCACTGCACGATATTATATTGCTGTACGTGGGGTGGAATCCCAGACGATAAAGGGCT\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000003.1_1_0/1 \n+TACCATTCGGGGCTATACTTGCAGCAAGTTTATTTGCCCATAAAACCATAAGTTATATTCATGAAACATATATCAAACCACGCGCATTGATGCTGTTTTTGACGATGATAGCTAATCGATGTGCGGATGAGATTATTTACGTCTCTCATTA\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000003.1_0_0/1 \n+GGAGGTTCCGTCAGAGGCGATAGCAAACACGGTTTCTGCCACCGAAGGGGATAATACAATATTGTCCAGAAACGTACTGATATGCTGTTTAAATTCAGAAGAGTGAATAACGACATCACAGGCTCTGAGTTTGCTCAAAAATTGGGAAAAT\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000003.1_2_1/1 \n+GATCCGCTTTCGCTCAAAGGCTCCTATGCGGGTGCCATGGGTTACGGTCAGTTTATGCCATCGTCATTTAAGCAGTATGCCGTCGATTTTAACGGTGACGGACATATCAACTTGTGGGATCCGGTTGATGCTATCGGCAGTGTGGCCAACT\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000003.1_5_1/1 \n+ACGGTTTTGTCTGTTAGTTCCATGCCGGATAATCCGTCAATAAACTCCTGCCAGGACTCGCCTTCGCACCCGGCATCCATACCCGGTAGCTGTCCTTGCCCCAGCGTTGGCGTGCCGAGCAGCAGCACGGGATAGGACAGAAAACTGTCCA\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000003.1_0_1/1 \n+CCGCAATGGCCTGGTGCCTGAACAGGTCATTGTTGAAGTGACGGAGGATGAAGTCATTTCCAGTTTCGACGCATTTTCCTCTGCTATCCAGCAATTACGTTCGGCGGGGATTGGTGTGGCTATCGCTGCTTGCGAAGTTTCAGCCAGGCAA\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000003.1_3_1/1 \n+CTTGGCGACGGTGAACCGCTGACGCTCTATCCCGGTGAAGTGCCCGCGCGTTTGCCCGGTGCCGCCTTTTGGCAGCAACAGGGCTTCCATTTTGAAGATTTTCGACCTCAAGCGATGAACGTTGATACGCCGCTGCCGCACATTCGGCTGG\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n+@NZ_JAFJYB010000003.1_1_1/1 \n+CGTCGGCAGAAACCGCCGGCAGCTCTAAGGTGATGCACGGCAACTGACGCTCCGCGCACCAACTGCCAAAAGAACCCGGCGTGGGGTAACCAATATGCTAGACCTGTGGCAATGAGAAAGCCCGTGAAAGCCATCCTGCCAGCGAAGAACG\n++\n+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII\n' |
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| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/test01_blobdir.tar.gz |
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| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/test02_blobdir.tar.gz |
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| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/test04_circle.png |
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| Binary file test-data/test04_circle.png has changed |
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| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/test04_cumulative.png |
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| Binary file test-data/test04_cumulative.png has changed |
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| diff -r 000000000000 -r 7d9ee8cd14b8 test-data/test04_snail.png |
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