| Previous changeset 25:f1368427a79c (2018-02-05) Next changeset 27:67b0b160903a (2019-10-17) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/htseq_count commit 3e7db651397e9a42de15c5d6f60cec780f4b32df |
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modified:
htseq-count.xml |
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| diff -r f1368427a79c -r 7f5a8d427b39 htseq-count.xml --- a/htseq-count.xml Mon Feb 05 15:04:47 2018 -0500 +++ b/htseq-count.xml Sun Apr 29 09:53:13 2018 -0400 |
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| @@ -158,43 +158,43 @@ </actions> </data> <data format="bam" name="samoutfile" metadata_source="samfile" label="${tool.name} on ${on_string} (BAM)"> - <filter>samout_conditional['samout'] == "Yes"</filter> + <filter>advanced_options['advanced_options_selector'] == 'advanced' and advanced_options['samout_conditional']['samout'] == "Yes"</filter> </data> </outputs> <tests> - <test> + <test expect_num_outputs="2"> <param name="samfile" value="htseq-test.sam" /> <param name="gfffile" value="htseq-test.gff" /> <output name="counts" file="htseq-test_counts.tsv" /> <output name="othercounts" file="htseq-test_othercounts.tsv" /> </test> - <test> + <test expect_num_outputs="2"> <param name="samfile" value="htseq-test.sam" /> <param name="gfffile" value="htseq-test.gff" /> <output name="counts" file="htseq-test_counts.tsv" /> <output name="othercounts" file="htseq-test_othercounts.tsv" /> </test> - <test> + <test expect_num_outputs="2"> <param name="samfile" value="htseq-test.bam" /> <param name="gfffile" value="htseq-test.gff" /> <output name="counts" file="htseq-test_counts.tsv" /> <output name="othercounts" file="htseq-test_othercounts.tsv" /> </test> - <test> + <test expect_num_outputs="2"> <param name="samfile" value="htseq-test-paired.bam" /> <param name="gfffile" value="htseq-test.gff" /> <output name="counts" file="htseq-test-paired_counts.tsv" /> <output name="othercounts" file="htseq-test-paired_othercounts.tsv" /> </test> - <test> + <test expect_num_outputs="2"> <param name="samfile" value="htseq-test-paired.bam" /> <param name="gfffile" value="htseq-test.gff" /> <param name="samout" value="No" /> <output name="counts" file="htseq-test-paired_counts.tsv" /> <output name="othercounts" file="htseq-test-paired_othercounts.tsv" /> </test> - <test> + <test expect_num_outputs="3"> <param name="samfile" value="htseq-test.sam" /> <param name="gfffile" value="htseq-test.gff" /> <param name="advanced_options_selector" value="advanced" /> @@ -205,7 +205,7 @@ <output name="othercounts" file="htseq-test_othercounts.tsv" /> <output name="samoutfile" file="htseq-test_samout.bam" /> </test> - <test> + <test expect_num_outputs="2"> <param name="samfile" value="htseq-test.sam" /> <param name="gfffile" value="htseq-test.gff" /> <param name="advanced_options_selector" value="advanced" /> |