| Previous changeset 2:b9cdce1e57a1 (2020-03-11) Next changeset 4:51447a1d38ed (2020-08-14) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750" |
|
modified:
chicViewpointBackgroundModel.xml macros.xml test-data/cHi-C/background.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt test-data/cHi-C/chicPlotViewpoint/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.png test-data/cHi-C/chicQualityControl/histogram.png test-data/cHi-C/chicQualityControl/new_referencepoints.bed_raw_filter test-data/cHi-C/chicQualityControl/sparsity.png test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt |
|
added:
test-data/cHi-C/chicQualityControl/new_referencepoints.bed_failed_reference_points test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt |
|
removed:
test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 chicViewpointBackgroundModel.xml --- a/chicViewpointBackgroundModel.xml Wed Mar 11 17:18:30 2020 -0400 +++ b/chicViewpointBackgroundModel.xml Tue Mar 24 14:22:19 2020 -0400 |
| [ |
| @@ -18,6 +18,7 @@ --averageContactBin $averageContactBin --fixateRange $fixateRange --referencePoints '$referencePoints' + $truncateZeros --threads @THREADS@ --outFileName background.txt ]]></command> @@ -29,17 +30,22 @@ help="Bed file contains all reference points which should be used to build the background model." /> <param argument="--averageContactBin" type="integer" value="5" label="Average contacts window size" help='Average the contacts of n bins via a sliding window approach.'/> <param argument="--fixateRange" type="integer" value="500000" label="Clip background distance" help='Fixate score of background model starting at distance x. E.g. all values greater 500kb are set to the value of the 500kb bin.'/> - + <param name='truncateZeros' type='boolean' truevalue='--truncateZeros' falsevalue="" checked="false" label="Truncate zeros" + help="Set this parameter if you want truncate zeros to fight over dispersion."/> </inputs> <outputs> <data name="background" from_work_dir="background.txt" format="tabular" label="${tool.name} on [${on_string}]: Background model"/> </outputs> <tests> <test> - <param name="matrix_h5_cooler_multiple" value="cHi-C/FL-E13-5_chr1.cool,cHi-C/MB-E10-5_chr1.cool"/> - + <param name="matrix_h5_cooler_multiple" value="cHi-C/FL-E13-5_chr1.cool,cHi-C/MB-E10-5_chr1.cool"/> <param name="referencePoints" value="cHi-C/referencePoints.bed"/> - + <output name="background" file="cHi-C/background.txt" ftype="tabular" compare="sim_size" delta='40000'/> + </test> + <test> + <param name="matrix_h5_cooler_multiple" value="cHi-C/FL-E13-5_chr1.cool,cHi-C/MB-E10-5_chr1.cool"/> + <param name="truncateZeros" value="True"/> + <param name="referencePoints" value="cHi-C/referencePoints.bed"/> <output name="background" file="cHi-C/background.txt" ftype="tabular" compare="sim_size" delta='40000'/> </test> </tests> |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 macros.xml --- a/macros.xml Wed Mar 11 17:18:30 2020 -0400 +++ b/macros.xml Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,6 +1,6 @@ <macros> <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> - <token name="@WRAPPER_VERSION@">3.4.2</token> + <token name="@WRAPPER_VERSION@">3.4.3</token> <token name="@USE_RANGE@"> #if $use_range.select_use_range == "yes_use_range": --range $range_min:$range_max |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/background.txt --- a/test-data/cHi-C/background.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/background.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| b'@@ -164,7 +164,7 @@\n -338000\t76.946811996331\t0.998913140903\t1.600000000000\t0.000108075815\n -337000\t66.326069137367\t0.998633679140\t1.600000000000\t0.000117082133\n -336000\t6.531035080654\t0.985956788068\t2.400000000000\t0.000120084239\n--335000\t4.038502304735\t0.979137939259\t2.400000000000\t0.000111077921\n+-335000\t4.037837793894\t0.979134450646\t2.400000000000\t0.000111077921\n -334000\t10.000000401813\t0.992154958432\t2.400000000000\t0.000102071603\n -333000\t75.942228925708\t0.999143285501\t1.400000000000\t0.000084058967\n -332000\t50.635511218941\t0.998944768415\t1.000000000000\t0.000069048437\n@@ -204,7 +204,7 @@\n -298000\t99.671708804931\t0.998723338419\t1.400000000000\t0.000168117935\n -297000\t13.351800481638\t0.991024175796\t2.200000000000\t0.000156109511\n -296000\t1.655504094188\t0.917511642376\t3.600000000000\t0.000192134783\n--295000\t1.060523597022\t0.866926497788\t3.200000000000\t0.000210147418\n+-295000\t1.060523188203\t0.866926452230\t3.200000000000\t0.000210147418\n -294000\t0.833099614466\t0.832648785231\t4.000000000000\t0.000216151630\n -293000\t0.785346253004\t0.808474470235\t4.200000000000\t0.000240168478\n -292000\t0.934128179068\t0.832185121292\t4.800000000000\t0.000243170584\n@@ -250,7 +250,7 @@\n -252000\t43.062593257066\t0.998168551046\t1.200000000000\t0.000102071603\n -251000\t63.376996352676\t0.999156735300\t0.600000000000\t0.000069048437\n -250000\t72.596190347787\t0.999167791576\t0.800000000000\t0.000078054755\n--249000\t48.581369948531\t0.998790975068\t0.800000000000\t0.000075052649\n+-249000\t47.997684951851\t0.998790162283\t0.800000000000\t0.000075052649\n -248000\t55.888478846304\t0.998794727337\t0.800000000000\t0.000087061073\n -247000\t76.855839768195\t0.999211550541\t0.800000000000\t0.000078054755\n -246000\t65.765429819751\t0.999010844853\t0.800000000000\t0.000084058967\n@@ -261,7 +261,7 @@\n -241000\t2.230949637882\t0.933808266890\t2.800000000000\t0.000204143206\n -240000\t49.982749623572\t0.997632904869\t1.400000000000\t0.000153107405\n -239000\t59.974426123086\t0.997563027791\t1.400000000000\t0.000189132677\n--238000\t69.686716200175\t0.997808677264\t1.600000000000\t0.000198138995\n+-238000\t67.200862492227\t0.997734882005\t1.600000000000\t0.000198138995\n -237000\t63.414525257421\t0.997714944152\t1.200000000000\t0.000186130571\n -236000\t81.969392166942\t0.998640022801\t1.000000000000\t0.000144101087\n -235000\t74.548936436231\t0.998409834485\t0.600000000000\t0.000153107405\n@@ -296,7 +296,7 @@\n -206000\t91.656738253191\t0.998378773023\t2.000000000000\t0.000192134783\n -205000\t57.758830377760\t0.997077553485\t2.000000000000\t0.000219153736\n -204000\t64.811138827972\t0.997432120073\t2.000000000000\t0.000216151630\n--203000\t54.301584113112\t0.996925568370\t2.200000000000\t0.000216151630\n+-203000\t50.270234177085\t0.996683457474\t2.200000000000\t0.000216151630\n -202000\t44.036846929361\t0.996495224556\t2.200000000000\t0.000201141100\n -201000\t39.321418746405\t0.996581436504\t2.200000000000\t0.000174122147\n -200000\t65.382216519485\t0.998047518412\t1.400000000000\t0.000165115829\n@@ -367,7 +367,7 @@\n -135000\t0.597068689934\t0.681477536001\t5.400000000000\t0.000360252717\n -134000\t0.808312572676\t0.751391348419\t4.600000000000\t0.000345242187\n -133000\t0.936841821968\t0.763186576331\t6.000000000000\t0.000375263247\n--132000\t1.074526720021\t0.789760312182\t6.000000000000\t0.000369259035\n+-132000\t1.074526288672\t0.789760243856\t6.000000000000\t0.000369259035\n -131000\t1.050039742041\t0.799828906721\t6.000000000000\t0.000339237975\n -130000\t22.032397408866\t0.989451619710\t3.400000000000\t0.000303212704\n -129000\t67.498461251178\t0.996601580366\t2.000000000000\t0.000297208492\n@@ -377,7 +377,7 @@\n -125000\t2.051124811456\t0.890907310437\t4.000000000000\t0.000324227446\n -124000\t0.981096526608\t0.794677366964\t4.000000000000\t0.000327229552\n -123000\t0.698813021849\t0.707884698190\t4.800000000000\t0.000372261141\n--122000\t1.063187082413\t0.810340982555\t3.800000000000\t0.000321225340\n+-122000\t1.063187372056\t0.810341028499\t3.800000000000\t0.000321225340\n -121000\t1.136015799456\t0.813484534563\t4.200000000000\t0.000336235869\n -120000\t1.273976685716\t0.826496269925\t4.200000000000\t0.000345242187\n -119000\t2.546455908134\t0.911738'..b'996042839944\t1.800000000000\t0.000420294837\n 271000\t74.539507063932\t0.995327616818\t2.000000000000\t0.000456320109\n-272000\t75.384248701428\t0.995595454241\t2.200000000000\t0.000432303261\n+272000\t88.348502987747\t0.996223822993\t2.200000000000\t0.000432303261\n 273000\t56.207912736877\t0.993790967788\t2.400000000000\t0.000453318003\n 274000\t63.105146216067\t0.994174670021\t2.600000000000\t0.000477334850\n 275000\t64.464496932999\t0.994689193550\t2.400000000000\t0.000444311685\n-276000\t64.393335535025\t0.994540448899\t2.800000000000\t0.000456320109\n+276000\t47.125315041149\t0.992554814442\t2.800000000000\t0.000456320109\n 277000\t5.213957427722\t0.931062677420\t3.800000000000\t0.000498349592\n 278000\t4.290754092341\t0.916999623603\t4.800000000000\t0.000501351698\n 279000\t4.306875584077\t0.924150026803\t4.600000000000\t0.000456320109\n@@ -834,14 +834,14 @@\n 332000\t85.301482118985\t0.997559429413\t2.000000000000\t0.000276193750\n 333000\t153.329678089878\t0.998621892880\t1.800000000000\t0.000273191644\n 334000\t65.288112407807\t0.996804414792\t2.000000000000\t0.000270189538\n-335000\t80.991578122715\t0.997079732920\t2.200000000000\t0.000306214810\n+335000\t80.991578122715\t0.997079732921\t2.200000000000\t0.000306214810\n 336000\t63.899891492507\t0.996566948355\t2.000000000000\t0.000288202174\n 337000\t74.424932923954\t0.997506440884\t1.600000000000\t0.000240168478\n 338000\t75.105858022823\t0.997498181877\t1.800000000000\t0.000243170584\n 339000\t67.979198991124\t0.997372730998\t1.200000000000\t0.000231162160\n 340000\t65.983334196840\t0.997679225144\t1.200000000000\t0.000198138995\n 341000\t76.234384517408\t0.997841673208\t1.200000000000\t0.000213149524\n-342000\t79.563052148081\t0.997463486279\t1.200000000000\t0.000261183220\n+342000\t69.200152621098\t0.997085234026\t1.200000000000\t0.000261183220\n 343000\t73.290639821573\t0.997340564155\t2.000000000000\t0.000252176902\n 344000\t51.415521803164\t0.996096597295\t2.600000000000\t0.000264185326\n 345000\t63.276710760068\t0.996389823099\t3.000000000000\t0.000300210598\n@@ -849,11 +849,11 @@\n 347000\t68.356689245347\t0.996778386641\t2.600000000000\t0.000285200068\n 348000\t102.157140056026\t0.997796680663\t1.600000000000\t0.000291204280\n 349000\t109.684223082994\t0.997777686783\t2.000000000000\t0.000315221128\n-350000\t68.909754575419\t0.996404928053\t1.800000000000\t0.000321225340\n+350000\t76.269586030371\t0.996748041801\t1.800000000000\t0.000321225340\n 351000\t72.982177707978\t0.996812059424\t2.000000000000\t0.000306214810\n 352000\t68.106836379475\t0.996638359923\t1.800000000000\t0.000300210598\n 353000\t84.940204344890\t0.997460211050\t2.000000000000\t0.000279195856\n-354000\t114.655501801403\t0.998262403751\t1.400000000000\t0.000261183220\n+354000\t89.963144735491\t0.997738338815\t1.400000000000\t0.000261183220\n 355000\t67.714782264924\t0.997499169065\t0.800000000000\t0.000219153736\n 356000\t105.846638400012\t0.998333833292\t1.000000000000\t0.000228160054\n 357000\t71.112747911331\t0.997553290838\t1.400000000000\t0.000225157948\n@@ -899,7 +899,7 @@\n 397000\t103.559180590750\t0.998325615257\t1.400000000000\t0.000222155842\n 398000\t82.929864337245\t0.998040848339\t1.200000000000\t0.000210147418\n 399000\t88.096144444420\t0.998498579097\t0.800000000000\t0.000171120041\n-400000\t139.792315643451\t0.999019435181\t0.800000000000\t0.000177124253\n+400000\t104.456004491871\t0.998709558910\t0.800000000000\t0.000177124253\n 401000\t70.619035777455\t0.997969150358\t1.000000000000\t0.000186130571\n 402000\t83.486881162742\t0.998360041302\t1.000000000000\t0.000177124253\n 403000\t74.162263305784\t0.997903412833\t0.800000000000\t0.000201141100\n@@ -924,7 +924,7 @@\n 422000\t64.705995027380\t0.997311685980\t1.600000000000\t0.000225157948\n 423000\t101.434205484627\t0.998031769527\t1.400000000000\t0.000258181114\n 424000\t86.889493446039\t0.997600073281\t1.400000000000\t0.000270189538\n-425000\t122.557196728006\t0.998314024248\t1.200000000000\t0.000267187432\n+425000\t77.058998171035\t0.997321238272\t1.200000000000\t0.000267187432\n 426000\t93.483885085263\t0.997741316659\t1.200000000000\t0.000273191644\n 427000\t84.930336242959\t0.997433149990\t1.200000000000\t0.000282197962\n 428000\t100.859430667462\t0.997863168223\t1.400000000000\t0.000279195856\n' |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,7 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.4.3 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 #Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 14331000 14344000 Eya1 673.0 43000 11.20000 +chr1 14274000 14279000 Eya1 673.0 -22000 7.00000 +chr1 14290000 14439000 Eya1 673.0 138000 523.00000 +chr1 14444000 14467000 Eya1 673.0 166000 10.00000 +chr1 14476000 14501000 Eya1 673.0 200000 30.25000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,5 +1,5 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.4.3 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 #Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 19122000 19131000 Tfap2d 472.0 37000 10.20000 -chr1 19188000 19232000 Tfap2d 472.0 138000 23.40000 +chr1 19077000 19118000 Tfap2d 472.0 24000 349.00000 +chr1 19120000 19274000 Tfap2d 472.0 180000 86.00000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,6 +1,5 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.4.3 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 #Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 4512000 4529000 Sox17 810.0 41000 24.80000 -chr1 4534000 4544000 Sox17 810.0 56000 7.00000 -chr1 4585000 4590000 Sox17 810.0 102000 8.00000 +chr1 4480000 4549000 Sox17 810.0 61000 640.00000 +chr1 4555000 4688000 Sox17 810.0 200000 73.18333 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,7 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.4.3 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 #Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 14331000 14344000 Eya1 832.0 43000 22.80000 +chr1 14274000 14279000 Eya1 832.0 -22000 0.00000 +chr1 14290000 14439000 Eya1 832.0 138000 645.00000 +chr1 14444000 14467000 Eya1 832.0 166000 25.00000 +chr1 14476000 14501000 Eya1 832.0 200000 26.15000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,5 +1,5 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.4.3 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 #Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 19122000 19131000 Tfap2d 800.0 37000 15.80000 -chr1 19188000 19232000 Tfap2d 800.0 138000 115.00000 +chr1 19077000 19118000 Tfap2d 800.0 24000 534.00000 +chr1 19120000 19274000 Tfap2d 800.0 180000 214.00000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt --- a/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,6 +1,5 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.4.3 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 #Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 4512000 4529000 Sox17 978.0 41000 33.20000 -chr1 4534000 4544000 Sox17 978.0 56000 13.20000 -chr1 4585000 4590000 Sox17 978.0 102000 2.40000 +chr1 4480000 4549000 Sox17 978.0 61000 798.00000 +chr1 4555000 4688000 Sox17 978.0 200000 82.93333 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt --- a/test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,7 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.4.3 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 #Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 14331000 14344000 Eya1 673.0 43000 11.20000 +chr1 14274000 14279000 Eya1 673.0 -22000 7.00000 +chr1 14290000 14439000 Eya1 673.0 138000 523.00000 +chr1 14444000 14467000 Eya1 673.0 166000 10.00000 +chr1 14476000 14501000 Eya1 673.0 200000 30.25000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt --- a/test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,7 @@ -# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3.1 +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.4.3 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 #Chromosome Start End Gene Sum of interactions Relative distance Raw target -chr1 14331000 14344000 Eya1 832.0 43000 22.80000 +chr1 14274000 14279000 Eya1 832.0 -22000 0.00000 +chr1 14290000 14439000 Eya1 832.0 138000 645.00000 +chr1 14444000 14467000 Eya1 832.0 166000 25.00000 +chr1 14476000 14501000 Eya1 832.0 200000 26.15000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by chi2 test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,3 +8,4 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14290000 14439000 Eya1 138000 673.00000 523.00000 832.00000 645.00000 0.97540 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by chi2 test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,4 +8,6 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.17177 +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00335 +chr1 14444000 14467000 Eya1 166000 673.00000 10.00000 832.00000 25.00000 0.05733 +chr1 14476000 14501000 Eya1 200000 673.00000 30.25000 832.00000 26.15000 0.18635 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by chi2 test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,4 +8,7 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.17177 +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00335 +chr1 14290000 14439000 Eya1 138000 673.00000 523.00000 832.00000 645.00000 0.97540 +chr1 14444000 14467000 Eya1 166000 673.00000 10.00000 832.00000 25.00000 0.05733 +chr1 14476000 14501000 Eya1 200000 673.00000 30.25000 832.00000 26.15000 0.18635 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by chi2 test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,4 +8,3 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by chi2 test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,4 +8,5 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000 +chr1 19077000 19118000 Tfap2d 24000 472.00000 349.00000 800.00000 534.00000 0.25577 +chr1 19120000 19274000 Tfap2d 180000 472.00000 86.00000 800.00000 214.00000 0.00599 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by chi2 test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,5 +8,5 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 19122000 19131000 Tfap2d 37000 472.00000 10.20000 800.00000 15.80000 0.82442 -chr1 19188000 19232000 Tfap2d 138000 472.00000 23.40000 800.00000 115.00000 0.00000 +chr1 19077000 19118000 Tfap2d 24000 472.00000 349.00000 800.00000 534.00000 0.25577 +chr1 19120000 19274000 Tfap2d 180000 472.00000 86.00000 800.00000 214.00000 0.00599 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by chi2 test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,4 +8,5 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171 +chr1 4480000 4549000 Sox17 61000 810.00000 640.00000 978.00000 798.00000 0.65155 +chr1 4555000 4688000 Sox17 200000 810.00000 73.18333 978.00000 82.93333 0.70460 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by chi2 test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,5 +8,3 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893 -chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt --- a/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by chi2 test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,6 +8,5 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 4512000 4529000 Sox17 41000 810.00000 24.80000 978.00000 33.20000 0.70171 -chr1 4534000 4544000 Sox17 56000 810.00000 7.00000 978.00000 13.20000 0.33893 -chr1 4585000 4590000 Sox17 102000 810.00000 8.00000 978.00000 2.40000 0.04116 +chr1 4480000 4549000 Sox17 61000 810.00000 640.00000 978.00000 798.00000 0.65155 +chr1 4555000 4688000 Sox17 200000 810.00000 73.18333 978.00000 82.93333 0.70460 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt --- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by fisher test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,3 +8,4 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14290000 14439000 Eya1 138000 673.00000 523.00000 832.00000 645.00000 1.00000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt --- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by fisher test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,4 +8,6 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380 +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366 +chr1 14444000 14467000 Eya1 166000 673.00000 10.00000 832.00000 25.00000 0.06013 +chr1 14476000 14501000 Eya1 200000 673.00000 30.25000 832.00000 26.15000 0.22603 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt --- a/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,4 +1,4 @@ -# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3.1 +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.4.3 # This file contains the p-values computed by fisher test # To test the smoothed (float) values they were rounded up to the next integer # @@ -8,4 +8,7 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 #Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value -chr1 14331000 14344000 Eya1 43000 673.00000 11.20000 832.00000 22.80000 0.23380 +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366 +chr1 14290000 14439000 Eya1 138000 673.00000 523.00000 832.00000 645.00000 1.00000 +chr1 14444000 14467000 Eya1 166000 673.00000 10.00000 832.00000 25.00000 0.06013 +chr1 14476000 14501000 Eya1 200000 673.00000 30.25000 832.00000 26.15000 0.22603 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicPlotViewpoint/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.png |
| b |
| Binary file test-data/cHi-C/chicPlotViewpoint/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.png has changed |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicQualityControl/histogram.png |
| b |
| Binary file test-data/cHi-C/chicQualityControl/histogram.png has changed |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicQualityControl/new_referencepoints.bed_raw_filter --- a/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_raw_filter Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_raw_filter Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,5 +1,7 @@ -# Created with chicQualityControl version 3.3 -# Chromosome Start End Sparsity 0_matrix.cool Sparsity 1_matrix.cool +# Created with chicQualityControl version 3.4.3 +# A sparsity of -1.0 indicates a faulty reference point e.g. no data for this reference point was in the matrix. +# Used Matrices 0_matrix.cool 1_matrix.cool +# Chromosome Start End Sparsity 0_matrix.cool Sparsity 1_matrix.cool chr1 4487435 4487435 Sox17 0.14485514485514486 0.16083916083916083 chr1 14300280 14300280 Eya1 0.14285714285714285 0.1938061938061938 chr1 19093103 19093103 Tfap2d 0.1048951048951049 0.16683316683316685 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -0,0 +1,13 @@ +# Created with chicQualityControl version 3.4.3 +# QC report for matrices: 0_matrix.cool 1_matrix.cool +#Sparsity threshold for rejection: sparsity <= 0.05 are rejected. + +Number of reference points: 43 +Number of accepted reference points: 35 +Number of rejected reference points: 8 +Number of faulty reference points: 0 + + +A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices. +It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends. +Please check the results of hicInfo to validate this for your data. |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicQualityControl/sparsity.png |
| b |
| Binary file test-data/cHi-C/chicQualityControl/sparsity.png has changed |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,6 +1,8 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 #Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.00283251424532149354 7.81112575817000021061 5.59999999999999964473 -chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.00000000000000000000 3.78135593591500018817 39.00000000000000000000 -chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.00001082770154392509 3.19033393500999995496 10.19999999999999928946 -chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.00008828123932902443 3.51709033858399999772 9.80000000000000071054 +chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.00703769867936687721 7.81112575817000021061 5.59999999999999964473 +chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.10421572859864070004 3.78135593591500018817 39.00000000000000000000 +chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.04850785315391703545 3.19033393500999995496 10.19999999999999928946 +chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.03491443188205700654 3.51709033858399999772 9.80000000000000071054 +chr1 14480000 14488000 Eya1 673.0 184000 0.01129271916799999900 0.00000001048074382837 19.28508294646199772160 7.59999999999999875655 +chr1 14491000 14501000 Eya1 673.0 200000 0.03068350668399999828 0.00000000000000011102 56.96782483342801128856 20.64999999999999857891 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,3 +1,7 @@ # /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 #Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 14295000 14298000 Eya1 832.0 -3000 0.05985576923100000002 0.00000000000000000000 4.79015312599299925012 49.79999999999999715783 +chr1 14295000 14298000 Eya1 832.0 -3000 0.05985576923100000002 0.05859241166597439765 4.79015312599299925012 49.79999999999999715783 +chr1 14426000 14432000 Eya1 832.0 130000 0.01081730769300000110 0.00000042985602988210 13.72351582211000042832 9.00000000000000000000 +chr1 14447000 14455000 Eya1 832.0 149000 0.01490384615199999950 0.00000000000003774758 22.36493893927400122834 12.39999999999999857891 +chr1 14460000 14465000 Eya1 832.0 162000 0.00913461538499999934 0.00000409886448993202 12.15366029908999934150 7.59999999999999964473 +chr1 14491000 14501000 Eya1 832.0 200000 0.02253605769199999720 0.00000000000000011102 41.39757163433100117800 18.75000000000000000000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,8 +1,10 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_dodw19_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.4.3 +# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.txt # Mode: x-fold background with 1.5 # Used p-value: 0.2 # chr1 14274000 14278000 chr1 14296000 14298000 chr1 14314000 14319000 +chr1 14480000 14488000 +chr1 14491000 14501000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,6 +1,10 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_dodw19_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.4.3 +# targetFolder/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt # Mode: x-fold background with 1.5 # Used p-value: 0.2 # chr1 14295000 14298000 +chr1 14426000 14432000 +chr1 14447000 14455000 +chr1 14460000 14465000 +chr1 14491000 14501000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Wed Mar 11 17:18:30 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,2 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885902431 9.15400589712000112286 7.00000000000000000000 +chr1 14295000 14372000 Eya1 673.0 -1000 0.73997028231099992723 0.00004780944416038491 71.55022378473699973256 497.99999999999977262632 +chr1 14391000 14404000 Eya1 673.0 99000 0.01485884100899999803 0.00001657170147506548 12.71460890380599906280 10.00000000000000000000 +chr1 14405000 14431000 Eya1 673.0 126000 0.01485884100399999762 0.00000000019301882315 16.50018487636599928692 10.00000000000000532907 +chr1 14447000 14465000 Eya1 673.0 150000 0.01485884100799999760 0.00000000084501772246 20.98645213257099939597 10.00000000000000177636 +chr1 14476000 14501000 Eya1 673.0 200000 0.04494799405200000653 0.00000000000000011102 81.22289233532099217427 30.24999999999999644729 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt Wed Mar 11 17:18:30 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,3 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 19124000 19130000 Tfap2d 472.0 33000 0.02076271186600000054 0.10353729660313626404 9.16165897065000045529 9.80000000000000071054 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -0,0 +1,10 @@ +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 19088000 19093000 Tfap2d 472.0 -1000 0.25550847457600001089 0.11635169910476195199 8.11832748109999968733 120.59999999999999431566 +chr1 19094000 19118000 Tfap2d 472.0 1000 0.38686440678100009194 0.03474409585293225522 32.83428528261499934615 182.60000000000005115908 +chr1 19124000 19141000 Tfap2d 472.0 33000 0.04661016949300000184 0.00000002462477854959 22.39995010446000023308 22.00000000000000000000 +chr1 19143000 19150000 Tfap2d 472.0 52000 0.01059322034000000079 0.01821075341789391011 7.00310519245599927274 5.00000000000000000000 +chr1 19153000 19185000 Tfap2d 472.0 65000 0.03177966102100000800 0.00000000020590662508 24.96572554191800108470 14.99999999999999467093 +chr1 19186000 19210000 Tfap2d 472.0 108000 0.03177966101800000498 0.00000007308534966111 29.45424687062300250773 15.00000000000000000000 +chr1 19215000 19251000 Tfap2d 472.0 137000 0.04237288135900001140 0.00000000012967626972 56.40252329690899557590 19.99999999999999644729 +chr1 19252000 19264000 Tfap2d 472.0 163000 0.01694915254200000249 0.00000130986798663191 24.34766306781100198009 8.00000000000000000000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt Wed Mar 11 17:18:30 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,3 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.08235176084316242484 8.98479195802099894763 8.00000000000000000000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -0,0 +1,9 @@ +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 4480000 4518000 Sox17 810.0 0 0.76049382715799984656 0.00000000602330973987 45.61581246979399395514 616.00000000000011368684 +chr1 4520000 4549000 Sox17 810.0 44000 0.02962962962900000247 0.00000000000001332268 17.03851209048299963911 24.00000000000000710543 +chr1 4557000 4578000 Sox17 810.0 75000 0.02592592592600001522 0.00000000000051858517 20.41795056780900097237 21.00000000000000355271 +chr1 4582000 4590000 Sox17 810.0 98000 0.01111111110999999860 0.00013740149648666655 9.96981855628800062163 9.00000000000000000000 +chr1 4592000 4634000 Sox17 810.0 116000 0.02839506171900002887 0.00000000000000011102 32.07927393785299585716 22.99999999999999289457 +chr1 4641000 4670000 Sox17 810.0 169000 0.01604938270900000546 0.00000000034415081895 23.33313824700799798961 12.99999999999999644729 +chr1 4671000 4688000 Sox17 810.0 191000 0.00763374485400000052 0.00000023615040700697 14.23725687309200438335 6.18333333333300050327 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt Wed Mar 11 17:18:30 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,3 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 14331000 14344000 Eya1 832.0 39000 0.02740384615299999715 0.04109483942319203109 12.88838410144700219462 22.80000000000000071054 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -0,0 +1,5 @@ +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14290000 14439000 Eya1 832.0 -1000 0.77524038462200028921 0.00000214655292485322 124.40376311550902244107 645.00000000000000000000 +chr1 14444000 14467000 Eya1 832.0 149000 0.03004807692100000191 0.00000000000000011102 43.43355247431500032462 25.00000000000000000000 +chr1 14484000 14501000 Eya1 832.0 200000 0.02902644230799999656 0.00000000000000011102 53.10190206687700253951 24.15000000000000213163 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt Wed Mar 11 17:18:30 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,4 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 19122000 19131000 Tfap2d 800.0 33000 0.01975000000000000019 0.01215875106169517217 8.65480483946599932210 15.80000000000000071054 -chr1 19188000 19232000 Tfap2d 800.0 105000 0.14375000000000007216 0.00725408648394210154 156.86467065896297867766 114.99999999999997157829 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -0,0 +1,6 @@ +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 19077000 19083000 Tfap2d 800.0 -15000 0.01875000000000000278 0.00087756598335464453 9.05078678760400023862 15.00000000000000000000 +chr1 19084000 19118000 Tfap2d 800.0 0 0.64874999999999971578 0.00000017949046560162 44.36507725070399033029 518.99999999999988631316 +chr1 19120000 19249000 Tfap2d 800.0 105000 0.25625000000000008882 0.00000000000000011102 244.06286621622496113559 204.99999999999994315658 +chr1 19258000 19274000 Tfap2d 800.0 169000 0.01000000000000000021 0.00000195299526528636 14.62211731845800244400 8.00000000000000000000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt Wed Mar 11 17:18:30 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,4 +0,0 @@ -# /home/wolffj/src/HiCExplorer/hicexplorer/test/test_data/cHi-C/MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 -#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target -chr1 4512000 4529000 Sox17 978.0 37000 0.03394683026800000142 0.03218197542328149474 15.11463155973700089874 33.19999999999999573674 -chr1 4534000 4544000 Sox17 978.0 52000 0.01349693251800000021 0.00199753407269609440 8.80743474809099957668 13.19999999999999928946 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -0,0 +1,8 @@ +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 4480000 4549000 Sox17 978.0 0 0.81595092025199977837 0.00000000000956168478 62.24249077437998067808 797.99999999999988631316 +chr1 4555000 4575000 Sox17 978.0 78000 0.02147239264300000727 0.00000000000005484502 17.04008783523400438753 21.00000000000000000000 +chr1 4577000 4591000 Sox17 978.0 93000 0.00715746421499999924 0.00023632212134716557 6.23881980673299985085 6.99999999999999911182 +chr1 4599000 4632000 Sox17 978.0 128000 0.01738241309700000112 0.00000000000000011102 20.66516512408400174650 16.99999999999999289457 +chr1 4634000 4662000 Sox17 978.0 169000 0.01635991820800000371 0.00000000000171385128 23.27331220218900398322 15.99999999999999644729 +chr1 4663000 4688000 Sox17 978.0 200000 0.02242672120499999977 0.00000000000000011102 39.41625174041998747043 21.93333333333300316781 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,6 +1,6 @@ -FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt -MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.txt -FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt -MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.txt -FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt -MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.txt \ No newline at end of file +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt +MB-E10-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt +MB-E10-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt +MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt \ No newline at end of file |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,6 +1,9 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.4.3 +# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.txt # Mode: loose p-value with 0.5 # Used p-value: 0.2 # -chr1 14331000 14344000 +chr1 14274000 14279000 +chr1 14290000 14439000 +chr1 14444000 14467000 +chr1 14476000 14501000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,7 +1,7 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.4.3 +# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.txt # Mode: loose p-value with 0.5 # Used p-value: 0.2 # -chr1 19122000 19131000 -chr1 19188000 19232000 +chr1 19077000 19118000 +chr1 19120000 19274000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt --- a/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| @@ -1,8 +1,7 @@ -# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3.1 -# /tmp/output_target_5cv5fzp2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.4.3 +# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.txt # Mode: loose p-value with 0.5 # Used p-value: 0.2 # -chr1 4512000 4529000 -chr1 4534000 4544000 -chr1 4585000 4590000 +chr1 4480000 4549000 +chr1 4555000 4688000 |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt --- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| b"@@ -1,11 +1,11 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4.3\n # FL-E13-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 673.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n chr1\t14100000\t14101000\tEya1\t673.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14101000\t14102000\tEya1\t673.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14102000\t14103000\tEya1\t673.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t14103000\t14104000\tEya1\t673.0\t-197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14104000\t14105000\tEya1\t673.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14105000\t14106000\tEya1\t673.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14106000\t14107000\tEya1\t673.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n@@ -42,11 +42,11 @@\n chr1\t14137000\t14138000\tEya1\t673.0\t-163000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14138000\t14139000\tEya1\t673.0\t-162000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14139000\t14140000\tEya1\t673.0\t-161000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14140000\t14141000\tEya1\t673.0\t-160000\t0.000891530461\t1.000000000000\t4.242405017910\t0.600000000000\n-chr1\t14141000\t14142000\tEya1\t673.0\t-159000\t0.000891530461\t1.000000000000\t4.789812097144\t0.600000000000\n-chr1\t14142000\t14143000\tEya1\t673.0\t-158000\t0.000891530461\t1.000000000000\t4.303889149198\t0.600000000000\n-chr1\t14143000\t14144000\tEya1\t673.0\t-157000\t0.000891530461\t1.000000000000\t4.367181637306\t0.600000000000\n-chr1\t14144000\t14145000\tEya1\t673.0\t-156000\t0.000891530461\t1.000000000000\t5.120143967809\t0.600000000000\n+chr1\t14140000\t14141000\tEya1\t673.0\t-160000\t0.000891530461\t0.012107544045\t4.242405017910\t0.600000000000\n+chr1\t14141000\t14142000\tEya1\t673.0\t-159000\t0.000891530461\t0.012107544045\t4.789812097144\t0.600000000000\n+chr1\t14142000\t14143000\tEya1\t673.0\t-158000\t0.000891530461\t0.012107544045\t4.303889149198\t0.600000000000\n+chr1\t14143000\t14144000\tEya1\t673.0\t-157000\t0.000891530461\t0.012107544045\t4.367181637306\t0.600000000000\n+chr1\t14144000\t14145000\tEya1\t673.0\t-156000\t0.000891530461\t0.012107544045\t5.120143967809\t0.600000000000\n chr1\t14145000\t14146000\tEya1\t673.0\t-155000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14146000\t14147000\tEya1\t673.0\t-154000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14147000\t14148000\tEya1\t673.0\t-153000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n@@ -58,341 +58,341 @@\n chr1\t14153000\t14154000\tEya1\t673.0\t-147000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14154000\t14155000\tEya1\t673.0\t-146000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14155000\t14156000\tEya1\t673.0\t-145000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14156000\t14157000\tEya1\t673.0\t-144000\t0.000000000000\t0.941276100920\t0.000000000000\t0.000000000000\n-chr1\t14157000\t14158000\tEya1\t673.0\t-143000\t0.000000000000\t0.772370955375\t0.000000000000\t0.000000000000\n-chr1\t14158000\t14159000\tEya1\t673.0\t-142000\t0.000000000000\t0.571035127843\t0.000000000000\t0.000000000000\n-chr1\t14159000\t14160000\tEya1\t673.0\t-141000\t0.000000000000\t0.562577575480\t0.000000000000\t0.000000000000\n-chr1\t14160000\t14161000\tEya1\t673.0\t-140000\t0.000000000000\t0.845939027270\t0.000000000000\t0.000000000000\n-chr1\t14161000\t14162000\tEya1\t673.0\t-139000\t0.000000000000\t0.993879662368\t0.000000000000\t0.000000000000\n-chr1\t14162000\t14163000\tEya1\t673.0\t-138000\t0.000000000000\t0.935848644545\t0.000000000000\t0.000000000000\n-chr1\t14163000\t14164000\tEya1\t673.0\t-137000\t0.000000000000\t0.9"..b'00000\t0.000000000000\n-chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t0.999594131731\t0.000000000000\t0.000000000000\n+chr1\t14468000\t14469000\tEya1\t673.0\t168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t673.0\t169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t673.0\t170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t673.0\t171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14472000\t14473000\tEya1\t673.0\t172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14473000\t14474000\tEya1\t673.0\t173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14474000\t14475000\tEya1\t673.0\t174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14475000\t14476000\tEya1\t673.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t1.000000000000\t0.421231702882\t0.200000000000\n-chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t1.000000000000\t0.449952046478\t0.200000000000\n-chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t1.000000000000\t0.933862738240\t0.400000000000\n-chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t1.000000000000\t0.951821637197\t0.400000000000\n+chr1\t14476000\t14477000\tEya1\t673.0\t176000\t0.000297176820\t0.000000000000\t0.421231702882\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t673.0\t177000\t0.000297176820\t0.000000000000\t0.449952046478\t0.200000000000\n+chr1\t14478000\t14479000\tEya1\t673.0\t178000\t0.000594353640\t0.000000000000\t0.933862738240\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t673.0\t179000\t0.000594353640\t0.000000000000\t0.951821637197\t0.400000000000\n chr1\t14480000\t14481000\tEya1\t673.0\t180000\t0.001485884101\t0.000000000000\t2.512422592521\t1.000000000000\n-chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t1.000000000000\t2.020192860178\t0.800000000000\n-chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t1.000000000000\t2.128805380321\t0.800000000000\n+chr1\t14481000\t14482000\tEya1\t673.0\t181000\t0.001188707281\t0.000000000000\t2.020192860178\t0.800000000000\n+chr1\t14482000\t14483000\tEya1\t673.0\t182000\t0.001188707281\t0.000000000000\t2.128805380321\t0.800000000000\n chr1\t14483000\t14484000\tEya1\t673.0\t183000\t0.001783060921\t0.000000000000\t3.093420317586\t1.200000000000\n chr1\t14484000\t14485000\tEya1\t673.0\t184000\t0.002080237741\t0.000000000000\t3.380127570538\t1.400000000000\n-chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t1.000000000000\t1.903643274393\t0.800000000000\n-chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t1.000000000000\t2.106158514412\t0.800000000000\n-chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t1.000000000000\t2.140312436513\t0.800000000000\n-chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t1.000000000000\t1.058710697124\t0.400000000000\n-chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t1.000000000000\t0.575520059550\t0.200000000000\n-chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t1.000000000000\t0.578885673960\t0.200000000000\n+chr1\t14485000\t14486000\tEya1\t673.0\t185000\t0.001188707281\t0.000000000000\t1.903643274393\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t673.0\t186000\t0.001188707281\t0.000000000000\t2.106158514412\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t673.0\t187000\t0.001188707281\t0.000000000000\t2.140312436513\t0.800000000000\n+chr1\t14488000\t14489000\tEya1\t673.0\t188000\t0.000594353640\t0.000000000000\t1.058710697124\t0.400000000000\n+chr1\t14489000\t14490000\tEya1\t673.0\t189000\t0.000297176820\t0.000000000000\t0.575520059550\t0.200000000000\n+chr1\t14490000\t14491000\tEya1\t673.0\t190000\t0.000297176820\t0.000000000000\t0.578885673960\t0.200000000000\n chr1\t14491000\t14492000\tEya1\t673.0\t191000\t0.002080237741\t0.000000000000\t3.849589730333\t1.400000000000\n chr1\t14492000\t14493000\tEya1\t673.0\t192000\t0.003268945022\t0.000000000000\t5.982878858272\t2.200000000000\n chr1\t14493000\t14494000\tEya1\t673.0\t193000\t0.002971768202\t0.000000000000\t5.892229182196\t2.000000000000\n' |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt --- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| b"@@ -1,11 +1,11 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4.3\n # FL-E13-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 472.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t1.000000000000\t8.554173074049\t0.666666666667\n-chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t1.000000000000\t5.040852007510\t0.500000000000\n-chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t1.000000000000\t3.282415254892\t0.400000000000\n-chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.999999994943\t3.136530131373\t0.400000000000\n+chr1\t18893000\t18894000\tTfap2d\t472.0\t-200000\t0.001412429379\t0.009736859396\t8.554173074049\t0.666666666667\n+chr1\t18894000\t18895000\tTfap2d\t472.0\t-199000\t0.001059322034\t0.016726462474\t5.040852007510\t0.500000000000\n+chr1\t18895000\t18896000\tTfap2d\t472.0\t-198000\t0.000847457627\t0.023000625561\t3.282415254892\t0.400000000000\n+chr1\t18896000\t18897000\tTfap2d\t472.0\t-197000\t0.000847457627\t0.023000625561\t3.136530131373\t0.400000000000\n chr1\t18897000\t18898000\tTfap2d\t472.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t18898000\t18899000\tTfap2d\t472.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t18899000\t18900000\tTfap2d\t472.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n@@ -58,44 +58,44 @@\n chr1\t18946000\t18947000\tTfap2d\t472.0\t-147000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t18947000\t18948000\tTfap2d\t472.0\t-146000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t18948000\t18949000\tTfap2d\t472.0\t-145000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18949000\t18950000\tTfap2d\t472.0\t-144000\t0.000000000000\t0.941276100920\t0.000000000000\t0.000000000000\n-chr1\t18950000\t18951000\tTfap2d\t472.0\t-143000\t0.000000000000\t0.772370955375\t0.000000000000\t0.000000000000\n-chr1\t18951000\t18952000\tTfap2d\t472.0\t-142000\t0.000000000000\t0.571035127843\t0.000000000000\t0.000000000000\n-chr1\t18952000\t18953000\tTfap2d\t472.0\t-141000\t0.000000000000\t0.562577575480\t0.000000000000\t0.000000000000\n-chr1\t18953000\t18954000\tTfap2d\t472.0\t-140000\t0.000000000000\t0.845939027270\t0.000000000000\t0.000000000000\n-chr1\t18954000\t18955000\tTfap2d\t472.0\t-139000\t0.000000000000\t0.993879662368\t0.000000000000\t0.000000000000\n-chr1\t18955000\t18956000\tTfap2d\t472.0\t-138000\t0.000000000000\t0.935848644545\t0.000000000000\t0.000000000000\n-chr1\t18956000\t18957000\tTfap2d\t472.0\t-137000\t0.000000000000\t0.934280976005\t0.000000000000\t0.000000000000\n-chr1\t18957000\t18958000\tTfap2d\t472.0\t-136000\t0.000000000000\t0.765933322800\t0.000000000000\t0.000000000000\n-chr1\t18958000\t18959000\tTfap2d\t472.0\t-135000\t0.000000000000\t0.494942888612\t0.000000000000\t0.000000000000\n-chr1\t18959000\t18960000\tTfap2d\t472.0\t-134000\t0.000000000000\t0.675370356213\t0.000000000000\t0.000000000000\n-chr1\t18960000\t18961000\tTfap2d\t472.0\t-133000\t0.000000000000\t0.740631235201\t0.000000000000\t0.000000000000\n-chr1\t18961000\t18962000\tTfap2d\t472.0\t-132000\t0.000000000000\t0.812828874743\t0.000000000000\t0.000000000000\n-chr1\t18962000\t18963000\tTfap2d\t472.0\t-131000\t0.000000000000\t0.815309879139\t0.000000000000\t0.000000000000\n+chr1\t18949000\t18950000\tTfap2d\t472.0\t-144000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18950000\t18951000\tTfap2d\t472.0\t-143000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18951000\t18952000\tTfap2d\t472.0\t-142000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18952000\t18953000\tTfap2d\t472.0\t-141000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18953000\t18954000\tTfap2d\t472.0\t-140000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18954000\t18955000\tTfap2d\t472.0\t-139000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t1895500"..b'7\t0.000000000000\t1.249060671745\t0.400000000000\n+chr1\t19250000\t19251000\tTfap2d\t472.0\t157000\t0.000847457627\t0.000000000000\t1.171318305746\t0.400000000000\n+chr1\t19251000\t19252000\tTfap2d\t472.0\t158000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19252000\t19253000\tTfap2d\t472.0\t159000\t0.000847457627\t0.000000000000\t1.098395766262\t0.400000000000\n+chr1\t19253000\t19254000\tTfap2d\t472.0\t160000\t0.000847457627\t0.000000000000\t1.081562114542\t0.400000000000\n+chr1\t19254000\t19255000\tTfap2d\t472.0\t161000\t0.001694915254\t0.000000000000\t2.038178424337\t0.800000000000\n+chr1\t19255000\t19256000\tTfap2d\t472.0\t162000\t0.001694915254\t0.000000000000\t2.304389486014\t0.800000000000\n+chr1\t19256000\t19257000\tTfap2d\t472.0\t163000\t0.002542372881\t0.000000000000\t3.513954917238\t1.200000000000\n+chr1\t19257000\t19258000\tTfap2d\t472.0\t164000\t0.002118644068\t0.000000000000\t3.055061815685\t1.000000000000\n+chr1\t19258000\t19259000\tTfap2d\t472.0\t165000\t0.002118644068\t0.000000000000\t3.252162579500\t1.000000000000\n+chr1\t19259000\t19260000\tTfap2d\t472.0\t166000\t0.001694915254\t0.000000000000\t2.822877120847\t0.800000000000\n+chr1\t19260000\t19261000\tTfap2d\t472.0\t167000\t0.001694915254\t0.000000000000\t2.701317818024\t0.800000000000\n+chr1\t19261000\t19262000\tTfap2d\t472.0\t168000\t0.000847457627\t0.000000000000\t1.312966101957\t0.400000000000\n+chr1\t19262000\t19263000\tTfap2d\t472.0\t169000\t0.000423728814\t0.000000000000\t0.593041411154\t0.200000000000\n+chr1\t19263000\t19264000\tTfap2d\t472.0\t170000\t0.000423728814\t0.000000000000\t0.573755512251\t0.200000000000\n+chr1\t19264000\t19265000\tTfap2d\t472.0\t171000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19265000\t19266000\tTfap2d\t472.0\t172000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19266000\t19267000\tTfap2d\t472.0\t173000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19267000\t19268000\tTfap2d\t472.0\t174000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t19268000\t19269000\tTfap2d\t472.0\t175000\t0.000423728814\t0.000000000000\t0.608378689139\t0.200000000000\n+chr1\t19269000\t19270000\tTfap2d\t472.0\t176000\t0.000423728814\t0.000000000000\t0.600612152627\t0.200000000000\n+chr1\t19270000\t19271000\tTfap2d\t472.0\t177000\t0.000423728814\t0.000000000000\t0.641562981525\t0.200000000000\n+chr1\t19271000\t19272000\tTfap2d\t472.0\t178000\t0.000423728814\t0.000000000000\t0.665772905546\t0.200000000000\n+chr1\t19272000\t19273000\tTfap2d\t472.0\t179000\t0.000423728814\t0.000000000000\t0.678576230756\t0.200000000000\n chr1\t19273000\t19274000\tTfap2d\t472.0\t180000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t19274000\t19275000\tTfap2d\t472.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t1.000000000000\t0.758837934828\t0.200000000000\n-chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t1.000000000000\t0.735124249200\t0.200000000000\n-chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t1.000000000000\t0.688506614701\t0.200000000000\n-chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t1.000000000000\t0.678576230756\t0.200000000000\n-chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t1.000000000000\t0.750765190784\t0.200000000000\n+chr1\t19275000\t19276000\tTfap2d\t472.0\t182000\t0.000423728814\t0.000000000000\t0.758837934828\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t472.0\t183000\t0.000423728814\t0.000000000000\t0.735124249200\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t472.0\t184000\t0.000423728814\t0.000000000000\t0.688506614701\t0.200000000000\n+chr1\t19278000\t19279000\tTfap2d\t472.0\t185000\t0.000423728814\t0.000000000000\t0.678576230756\t0.200000000000\n+chr1\t19279000\t19280000\tTfap2d\t472.0\t186000\t0.000423728814\t0.000000000000\t0.750765190784\t0.200000000000\n chr1\t19280000\t19281000\tTfap2d\t472.0\t187000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t19281000\t19282000\tTfap2d\t472.0\t188000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t19282000\t19283000\tTfap2d\t472.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt --- a/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| b"@@ -1,11 +1,11 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4.3\n # FL-E13-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 810.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n chr1\t4287000\t4288000\tSox17\t810.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4288000\t4289000\tSox17\t810.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4289000\t4290000\tSox17\t810.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t810.0\t-197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4291000\t4292000\tSox17\t810.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4292000\t4293000\tSox17\t810.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4293000\t4294000\tSox17\t810.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n@@ -58,44 +58,44 @@\n chr1\t4340000\t4341000\tSox17\t810.0\t-147000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4341000\t4342000\tSox17\t810.0\t-146000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4342000\t4343000\tSox17\t810.0\t-145000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4343000\t4344000\tSox17\t810.0\t-144000\t0.000000000000\t0.941276100920\t0.000000000000\t0.000000000000\n-chr1\t4344000\t4345000\tSox17\t810.0\t-143000\t0.000000000000\t0.772370955375\t0.000000000000\t0.000000000000\n-chr1\t4345000\t4346000\tSox17\t810.0\t-142000\t0.000000000000\t0.571035127843\t0.000000000000\t0.000000000000\n-chr1\t4346000\t4347000\tSox17\t810.0\t-141000\t0.000000000000\t0.562577575480\t0.000000000000\t0.000000000000\n-chr1\t4347000\t4348000\tSox17\t810.0\t-140000\t0.000000000000\t0.845939027270\t0.000000000000\t0.000000000000\n-chr1\t4348000\t4349000\tSox17\t810.0\t-139000\t0.000000000000\t0.993879662368\t0.000000000000\t0.000000000000\n-chr1\t4349000\t4350000\tSox17\t810.0\t-138000\t0.000000000000\t0.935848644545\t0.000000000000\t0.000000000000\n-chr1\t4350000\t4351000\tSox17\t810.0\t-137000\t0.000000000000\t0.934280976005\t0.000000000000\t0.000000000000\n-chr1\t4351000\t4352000\tSox17\t810.0\t-136000\t0.000000000000\t0.765933322800\t0.000000000000\t0.000000000000\n-chr1\t4352000\t4353000\tSox17\t810.0\t-135000\t0.000000000000\t0.494942888612\t0.000000000000\t0.000000000000\n-chr1\t4353000\t4354000\tSox17\t810.0\t-134000\t0.000000000000\t0.675370356213\t0.000000000000\t0.000000000000\n-chr1\t4354000\t4355000\tSox17\t810.0\t-133000\t0.000000000000\t0.740631235201\t0.000000000000\t0.000000000000\n-chr1\t4355000\t4356000\tSox17\t810.0\t-132000\t0.000000000000\t0.812828874743\t0.000000000000\t0.000000000000\n-chr1\t4356000\t4357000\tSox17\t810.0\t-131000\t0.000000000000\t0.815309879139\t0.000000000000\t0.000000000000\n+chr1\t4343000\t4344000\tSox17\t810.0\t-144000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4344000\t4345000\tSox17\t810.0\t-143000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4345000\t4346000\tSox17\t810.0\t-142000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4346000\t4347000\tSox17\t810.0\t-141000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4347000\t4348000\tSox17\t810.0\t-140000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4348000\t4349000\tSox17\t810.0\t-139000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4349000\t4350000\tSox17\t810.0\t-138000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4350000\t4351000\tSox17\t810.0\t-137000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4351000\t4352000\tSox17\t810.0\t-136000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4352000\t4353000\tSox17\t810.0\t-135000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4353000\t4354"..b'0.000493827160\t0.000000000000\t0.775913114612\t0.400000000000\n+chr1\t4666000\t4667000\tSox17\t810.0\t179000\t0.000246913580\t0.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4667000\t4668000\tSox17\t810.0\t180000\t0.000246913580\t0.000000000000\t0.417496396239\t0.200000000000\n+chr1\t4668000\t4669000\tSox17\t810.0\t181000\t0.000246913580\t0.000000000000\t0.419626479907\t0.200000000000\n+chr1\t4669000\t4670000\tSox17\t810.0\t182000\t0.000246913580\t0.000000000000\t0.442187043505\t0.200000000000\n chr1\t4670000\t4671000\tSox17\t810.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t1.000000000000\t0.401203854492\t0.200000000000\n-chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t1.000000000000\t0.395417260391\t0.200000000000\n-chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t1.000000000000\t0.437482925987\t0.200000000000\n-chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t1.000000000000\t0.444577243757\t0.200000000000\n-chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t1.000000000000\t0.879644813784\t0.400000000000\n-chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t1.000000000000\t0.478179012441\t0.200000000000\n-chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t1.000000000000\t0.480975380957\t0.200000000000\n-chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t1.000000000000\t1.370779835192\t0.600000000000\n-chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t1.000000000000\t1.355716320410\t0.600000000000\n-chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t1.000000000000\t1.468692681340\t0.600000000000\n-chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t1.000000000000\t1.426244915656\t0.600000000000\n-chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t1.000000000000\t1.513744604449\t0.600000000000\n-chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t1.000000000000\t1.009163069632\t0.400000000000\n-chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t1.000000000000\t0.934622615061\t0.400000000000\n-chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t1.000000000000\t0.403170540070\t0.200000000000\n-chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t1.000000000000\t0.538264332961\t0.250000000000\n-chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t1.000000000000\t0.699377466512\t0.333333333333\n+chr1\t4671000\t4672000\tSox17\t810.0\t184000\t0.000246913580\t0.000000000000\t0.401203854492\t0.200000000000\n+chr1\t4672000\t4673000\tSox17\t810.0\t185000\t0.000246913580\t0.000000000000\t0.395417260391\t0.200000000000\n+chr1\t4673000\t4674000\tSox17\t810.0\t186000\t0.000246913580\t0.000000000000\t0.437482925987\t0.200000000000\n+chr1\t4674000\t4675000\tSox17\t810.0\t187000\t0.000246913580\t0.000000000000\t0.444577243757\t0.200000000000\n+chr1\t4675000\t4676000\tSox17\t810.0\t188000\t0.000493827160\t0.000000000000\t0.879644813784\t0.400000000000\n+chr1\t4676000\t4677000\tSox17\t810.0\t189000\t0.000246913580\t0.000000000000\t0.478179012441\t0.200000000000\n+chr1\t4677000\t4678000\tSox17\t810.0\t190000\t0.000246913580\t0.000000000000\t0.480975380957\t0.200000000000\n+chr1\t4678000\t4679000\tSox17\t810.0\t191000\t0.000740740741\t0.000000000000\t1.370779835192\t0.600000000000\n+chr1\t4679000\t4680000\tSox17\t810.0\t192000\t0.000740740741\t0.000000000000\t1.355716320410\t0.600000000000\n+chr1\t4680000\t4681000\tSox17\t810.0\t193000\t0.000740740741\t0.000000000000\t1.468692681340\t0.600000000000\n+chr1\t4681000\t4682000\tSox17\t810.0\t194000\t0.000740740741\t0.000000000000\t1.426244915656\t0.600000000000\n+chr1\t4682000\t4683000\tSox17\t810.0\t195000\t0.000740740741\t0.000000000000\t1.513744604449\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t810.0\t196000\t0.000493827160\t0.000000000000\t1.009163069632\t0.400000000000\n+chr1\t4684000\t4685000\tSox17\t810.0\t197000\t0.000493827160\t0.000000000000\t0.934622615061\t0.400000000000\n+chr1\t4685000\t4686000\tSox17\t810.0\t198000\t0.000246913580\t0.000000000000\t0.403170540070\t0.200000000000\n+chr1\t4686000\t4687000\tSox17\t810.0\t199000\t0.000308641975\t0.000000000000\t0.538264332961\t0.250000000000\n+chr1\t4687000\t4688000\tSox17\t810.0\t200000\t0.000411522634\t0.000000000000\t0.699377466512\t0.333333333333\n' |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt --- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| b"@@ -1,12 +1,12 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4.3\n # MB-E10-5_chr1.cool\tchr1_14300280_14300280\t14.10 Mbp\t14.50 Mbp\tEya1\tSum of interactions in fixate range: 832.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n-chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t1.000000000000\t2.426424093120\t0.333333333333\n-chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t1.000000000000\t1.429857059822\t0.250000000000\n-chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t1.000000000000\t0.931069711724\t0.200000000000\n-chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.999999994943\t0.889688835341\t0.200000000000\n-chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t1.000000000000\t0.976487746811\t0.200000000000\n+chr1\t14100000\t14101000\tEya1\t832.0\t-200000\t0.000400641026\t0.028365821799\t2.426424093120\t0.333333333333\n+chr1\t14101000\t14102000\tEya1\t832.0\t-199000\t0.000300480769\t0.036748857670\t1.429857059822\t0.250000000000\n+chr1\t14102000\t14103000\tEya1\t832.0\t-198000\t0.000240384615\t0.042850447268\t0.931069711724\t0.200000000000\n+chr1\t14103000\t14104000\tEya1\t832.0\t-197000\t0.000240384615\t0.042850447268\t0.889688835341\t0.200000000000\n+chr1\t14104000\t14105000\tEya1\t832.0\t-196000\t0.000240384615\t0.042850447268\t0.976487746811\t0.200000000000\n chr1\t14105000\t14106000\tEya1\t832.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14106000\t14107000\tEya1\t832.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14107000\t14108000\tEya1\t832.0\t-193000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n@@ -58,44 +58,44 @@\n chr1\t14153000\t14154000\tEya1\t832.0\t-147000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14154000\t14155000\tEya1\t832.0\t-146000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14155000\t14156000\tEya1\t832.0\t-145000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14156000\t14157000\tEya1\t832.0\t-144000\t0.000000000000\t0.941276100920\t0.000000000000\t0.000000000000\n-chr1\t14157000\t14158000\tEya1\t832.0\t-143000\t0.000000000000\t0.772370955375\t0.000000000000\t0.000000000000\n-chr1\t14158000\t14159000\tEya1\t832.0\t-142000\t0.000000000000\t0.571035127843\t0.000000000000\t0.000000000000\n-chr1\t14159000\t14160000\tEya1\t832.0\t-141000\t0.000000000000\t0.562577575480\t0.000000000000\t0.000000000000\n-chr1\t14160000\t14161000\tEya1\t832.0\t-140000\t0.000000000000\t0.845939027270\t0.000000000000\t0.000000000000\n-chr1\t14161000\t14162000\tEya1\t832.0\t-139000\t0.000000000000\t0.993879662368\t0.000000000000\t0.000000000000\n-chr1\t14162000\t14163000\tEya1\t832.0\t-138000\t0.000000000000\t0.935848644545\t0.000000000000\t0.000000000000\n-chr1\t14163000\t14164000\tEya1\t832.0\t-137000\t0.000000000000\t0.934280976005\t0.000000000000\t0.000000000000\n-chr1\t14164000\t14165000\tEya1\t832.0\t-136000\t0.000000000000\t0.765933322800\t0.000000000000\t0.000000000000\n-chr1\t14165000\t14166000\tEya1\t832.0\t-135000\t0.000000000000\t0.494942888612\t0.000000000000\t0.000000000000\n-chr1\t14166000\t14167000\tEya1\t832.0\t-134000\t0.000000000000\t0.675370356213\t0.000000000000\t0.000000000000\n-chr1\t14167000\t14168000\tEya1\t832.0\t-133000\t0.000000000000\t0.740631235201\t0.000000000000\t0.000000000000\n-chr1\t14168000\t14169000\tEya1\t832.0\t-132000\t0.000000000000\t0.812828874743\t0.000000000000\t0.000000000000\n-chr1\t14169000\t14170000\tEya1\t832.0\t-131000\t0.000000000000\t0.815309879139\t0.000000000000\t0.000000000000\n+chr1\t14156000\t14157000\tEya1\t832.0\t-144000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14157000\t14158000\tEya1\t832.0\t-143000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14158000\t14159000\tEya1\t832.0\t-142000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14159000\t14160000\tEya1\t832.0\t-141000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14160000\t14161000\tEya1\t832.0\t-140000\t0.000000000000\t1.000000000000\t0.00000000"..b'51323\t0.400000000000\n-chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.999594131731\t0.667266626197\t0.400000000000\n-chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t1.000000000000\t0.690275820369\t0.400000000000\n-chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t1.000000000000\t0.340731894279\t0.200000000000\n-chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t1.000000000000\t0.727927229038\t0.400000000000\n-chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t1.000000000000\t0.755396181293\t0.400000000000\n-chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t1.000000000000\t0.769923031050\t0.400000000000\n-chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t1.000000000000\t0.812913656138\t0.400000000000\n-chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t1.000000000000\t0.408530587410\t0.200000000000\n+chr1\t14468000\t14469000\tEya1\t832.0\t168000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14469000\t14470000\tEya1\t832.0\t169000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14470000\t14471000\tEya1\t832.0\t170000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t14471000\t14472000\tEya1\t832.0\t171000\t0.000480769231\t0.000000000000\t0.659028767461\t0.400000000000\n+chr1\t14472000\t14473000\tEya1\t832.0\t172000\t0.000480769231\t0.000000000000\t0.618316565296\t0.400000000000\n+chr1\t14473000\t14474000\tEya1\t832.0\t173000\t0.000480769231\t0.000000000000\t0.630488151323\t0.400000000000\n+chr1\t14474000\t14475000\tEya1\t832.0\t174000\t0.000480769231\t0.000000000000\t0.667266626197\t0.400000000000\n+chr1\t14475000\t14476000\tEya1\t832.0\t175000\t0.000480769231\t0.000000000000\t0.690275820369\t0.400000000000\n+chr1\t14476000\t14477000\tEya1\t832.0\t176000\t0.000240384615\t0.000000000000\t0.340731894279\t0.200000000000\n+chr1\t14477000\t14478000\tEya1\t832.0\t177000\t0.000480769231\t0.000000000000\t0.727927229038\t0.400000000000\n+chr1\t14478000\t14479000\tEya1\t832.0\t178000\t0.000480769231\t0.000000000000\t0.755396181293\t0.400000000000\n+chr1\t14479000\t14480000\tEya1\t832.0\t179000\t0.000480769231\t0.000000000000\t0.769923031050\t0.400000000000\n+chr1\t14480000\t14481000\tEya1\t832.0\t180000\t0.000480769231\t0.000000000000\t0.812913656138\t0.400000000000\n+chr1\t14481000\t14482000\tEya1\t832.0\t181000\t0.000240384615\t0.000000000000\t0.408530587410\t0.200000000000\n chr1\t14482000\t14483000\tEya1\t832.0\t182000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t14483000\t14484000\tEya1\t832.0\t183000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t1.000000000000\t0.390595098725\t0.200000000000\n-chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t1.000000000000\t1.539846062099\t0.800000000000\n-chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t1.000000000000\t1.703659471393\t0.800000000000\n-chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t1.000000000000\t1.731286381939\t0.800000000000\n+chr1\t14484000\t14485000\tEya1\t832.0\t184000\t0.000240384615\t0.000000000000\t0.390595098725\t0.200000000000\n+chr1\t14485000\t14486000\tEya1\t832.0\t185000\t0.000961538462\t0.000000000000\t1.539846062099\t0.800000000000\n+chr1\t14486000\t14487000\tEya1\t832.0\t186000\t0.000961538462\t0.000000000000\t1.703659471393\t0.800000000000\n+chr1\t14487000\t14488000\tEya1\t832.0\t187000\t0.000961538462\t0.000000000000\t1.731286381939\t0.800000000000\n chr1\t14488000\t14489000\tEya1\t832.0\t188000\t0.001201923077\t0.000000000000\t2.140962437394\t1.000000000000\n chr1\t14489000\t14490000\tEya1\t832.0\t189000\t0.001442307692\t0.000000000000\t2.793209135173\t1.200000000000\n-chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t1.000000000000\t1.404771845823\t0.600000000000\n+chr1\t14490000\t14491000\tEya1\t832.0\t190000\t0.000721153846\t0.000000000000\t1.404771845823\t0.600000000000\n chr1\t14491000\t14492000\tEya1\t832.0\t191000\t0.001442307692\t0.000000000000\t2.669066506024\t1.200000000000\n chr1\t14492000\t14493000\tEya1\t832.0\t192000\t0.002403846154\t0.000000000000\t4.399560174407\t2.000000000000\n chr1\t14493000\t14494000\tEya1\t832.0\t193000\t0.002163461538\t0.000000000000\t4.289571172663\t1.800000000000\n' |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt --- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| b"@@ -1,11 +1,11 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4.3\n # MB-E10-5_chr1.cool\tchr1_19093103_19093103\t18.89 Mbp\t19.29 Mbp\tTfap2d\tSum of interactions in fixate range: 800.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n chr1\t18893000\t18894000\tTfap2d\t800.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t18894000\t18895000\tTfap2d\t800.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t18895000\t18896000\tTfap2d\t800.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t18896000\t18897000\tTfap2d\t800.0\t-197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t18897000\t18898000\tTfap2d\t800.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t18898000\t18899000\tTfap2d\t800.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t18899000\t18900000\tTfap2d\t800.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n@@ -58,348 +58,348 @@\n chr1\t18946000\t18947000\tTfap2d\t800.0\t-147000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t18947000\t18948000\tTfap2d\t800.0\t-146000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t18948000\t18949000\tTfap2d\t800.0\t-145000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t18949000\t18950000\tTfap2d\t800.0\t-144000\t0.000000000000\t0.941276100920\t0.000000000000\t0.000000000000\n-chr1\t18950000\t18951000\tTfap2d\t800.0\t-143000\t0.000000000000\t0.772370955375\t0.000000000000\t0.000000000000\n-chr1\t18951000\t18952000\tTfap2d\t800.0\t-142000\t0.000000000000\t0.571035127843\t0.000000000000\t0.000000000000\n-chr1\t18952000\t18953000\tTfap2d\t800.0\t-141000\t0.000000000000\t0.562577575480\t0.000000000000\t0.000000000000\n-chr1\t18953000\t18954000\tTfap2d\t800.0\t-140000\t0.000000000000\t0.845939027270\t0.000000000000\t0.000000000000\n-chr1\t18954000\t18955000\tTfap2d\t800.0\t-139000\t0.000000000000\t0.993879662368\t0.000000000000\t0.000000000000\n-chr1\t18955000\t18956000\tTfap2d\t800.0\t-138000\t0.000000000000\t0.935848644545\t0.000000000000\t0.000000000000\n-chr1\t18956000\t18957000\tTfap2d\t800.0\t-137000\t0.000000000000\t0.934280976005\t0.000000000000\t0.000000000000\n-chr1\t18957000\t18958000\tTfap2d\t800.0\t-136000\t0.000000000000\t0.765933322800\t0.000000000000\t0.000000000000\n-chr1\t18958000\t18959000\tTfap2d\t800.0\t-135000\t0.000000000000\t0.494942888612\t0.000000000000\t0.000000000000\n-chr1\t18959000\t18960000\tTfap2d\t800.0\t-134000\t0.000000000000\t0.675370356213\t0.000000000000\t0.000000000000\n-chr1\t18960000\t18961000\tTfap2d\t800.0\t-133000\t0.000000000000\t0.740631235201\t0.000000000000\t0.000000000000\n-chr1\t18961000\t18962000\tTfap2d\t800.0\t-132000\t0.000000000000\t0.812828874743\t0.000000000000\t0.000000000000\n-chr1\t18962000\t18963000\tTfap2d\t800.0\t-131000\t0.000000000000\t0.815309879139\t0.000000000000\t0.000000000000\n+chr1\t18949000\t18950000\tTfap2d\t800.0\t-144000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18950000\t18951000\tTfap2d\t800.0\t-143000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18951000\t18952000\tTfap2d\t800.0\t-142000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18952000\t18953000\tTfap2d\t800.0\t-141000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18953000\t18954000\tTfap2d\t800.0\t-140000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18954000\t18955000\tTfap2d\t800.0\t-139000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18955000\t18956000\tTfap2d\t800.0\t-138000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18956000\t18957000\tTfap2d\t800.0\t-137000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18957000\t18958000\tTfap2d\t800.0\t-136000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t18958"..b'0\t0.000000000000\t1.135566477299\t0.600000000000\n+chr1\t19271000\t19272000\tTfap2d\t800.0\t178000\t0.000500000000\t0.000000000000\t0.785612028545\t0.400000000000\n+chr1\t19272000\t19273000\tTfap2d\t800.0\t179000\t0.000500000000\t0.000000000000\t0.800719952292\t0.400000000000\n+chr1\t19273000\t19274000\tTfap2d\t800.0\t180000\t0.000250000000\t0.000000000000\t0.422715101192\t0.200000000000\n chr1\t19274000\t19275000\tTfap2d\t800.0\t181000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t1.000000000000\t0.447714381549\t0.200000000000\n-chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t1.000000000000\t0.433723307028\t0.200000000000\n-chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t1.000000000000\t1.218656708021\t0.600000000000\n-chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t1.000000000000\t1.201079928437\t0.600000000000\n-chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t1.000000000000\t1.328854387687\t0.600000000000\n-chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t1.000000000000\t0.900268918608\t0.400000000000\n-chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t1.000000000000\t0.890640373956\t0.400000000000\n+chr1\t19275000\t19276000\tTfap2d\t800.0\t182000\t0.000250000000\t0.000000000000\t0.447714381549\t0.200000000000\n+chr1\t19276000\t19277000\tTfap2d\t800.0\t183000\t0.000250000000\t0.000000000000\t0.433723307028\t0.200000000000\n+chr1\t19277000\t19278000\tTfap2d\t800.0\t184000\t0.000750000000\t0.000000000000\t1.218656708021\t0.600000000000\n+chr1\t19278000\t19279000\tTfap2d\t800.0\t185000\t0.000750000000\t0.000000000000\t1.201079928437\t0.600000000000\n+chr1\t19279000\t19280000\tTfap2d\t800.0\t186000\t0.000750000000\t0.000000000000\t1.328854387687\t0.600000000000\n+chr1\t19280000\t19281000\tTfap2d\t800.0\t187000\t0.000500000000\t0.000000000000\t0.900268918608\t0.400000000000\n+chr1\t19281000\t19282000\tTfap2d\t800.0\t188000\t0.000500000000\t0.000000000000\t0.890640373956\t0.400000000000\n chr1\t19282000\t19283000\tTfap2d\t800.0\t189000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t1.000000000000\t0.486987573219\t0.200000000000\n-chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t1.000000000000\t0.462638194377\t0.200000000000\n-chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t1.000000000000\t0.457554258138\t0.200000000000\n-chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t1.000000000000\t0.991367559904\t0.400000000000\n-chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t1.000000000000\t0.962715318068\t0.400000000000\n-chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n-chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t1.000000000000\t0.510888804001\t0.200000000000\n-chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t1.000000000000\t0.473152698875\t0.200000000000\n+chr1\t19283000\t19284000\tTfap2d\t800.0\t190000\t0.000250000000\t0.000000000000\t0.486987573219\t0.200000000000\n+chr1\t19284000\t19285000\tTfap2d\t800.0\t191000\t0.000250000000\t0.000000000000\t0.462638194377\t0.200000000000\n+chr1\t19285000\t19286000\tTfap2d\t800.0\t192000\t0.000250000000\t0.000000000000\t0.457554258138\t0.200000000000\n+chr1\t19286000\t19287000\tTfap2d\t800.0\t193000\t0.000500000000\t0.000000000000\t0.991367559904\t0.400000000000\n+chr1\t19287000\t19288000\tTfap2d\t800.0\t194000\t0.000500000000\t0.000000000000\t0.962715318068\t0.400000000000\n+chr1\t19288000\t19289000\tTfap2d\t800.0\t195000\t0.000250000000\t0.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19289000\t19290000\tTfap2d\t800.0\t196000\t0.000250000000\t0.000000000000\t0.510888804001\t0.200000000000\n+chr1\t19290000\t19291000\tTfap2d\t800.0\t197000\t0.000250000000\t0.000000000000\t0.473152698875\t0.200000000000\n chr1\t19291000\t19292000\tTfap2d\t800.0\t198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t19292000\t19293000\tTfap2d\t800.0\t199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t19293000\t19294000\tTfap2d\t800.0\t200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n' |
| b |
| diff -r b9cdce1e57a1 -r 7fe1a401d833 test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt --- a/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt Wed Mar 11 17:18:30 2020 -0400 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt Tue Mar 24 14:22:19 2020 -0400 |
| b |
| b"@@ -1,11 +1,11 @@\n-# Interaction file, created with HiCExplorer's chicViewpoint version 3.4\n+# Interaction file, created with HiCExplorer's chicViewpoint version 3.4.3\n # MB-E10-5_chr1.cool\tchr1_4487435_4487435\t4.29 Mbp\t4.69 Mbp\tSox17\tSum of interactions in fixate range: 978.0\n # Chromosome\tStart\tEnd\tGene\tSum of interactions\tRelative position\tRelative Interactions\tp-value\tx-fold\tRaw\n #\n chr1\t4287000\t4288000\tSox17\t978.0\t-200000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4288000\t4289000\tSox17\t978.0\t-199000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4289000\t4290000\tSox17\t978.0\t-198000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t0.999999994943\t0.000000000000\t0.000000000000\n+chr1\t4290000\t4291000\tSox17\t978.0\t-197000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4291000\t4292000\tSox17\t978.0\t-196000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4292000\t4293000\tSox17\t978.0\t-195000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4293000\t4294000\tSox17\t978.0\t-194000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n@@ -58,44 +58,44 @@\n chr1\t4340000\t4341000\tSox17\t978.0\t-147000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4341000\t4342000\tSox17\t978.0\t-146000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n chr1\t4342000\t4343000\tSox17\t978.0\t-145000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4343000\t4344000\tSox17\t978.0\t-144000\t0.000000000000\t0.941276100920\t0.000000000000\t0.000000000000\n-chr1\t4344000\t4345000\tSox17\t978.0\t-143000\t0.000000000000\t0.772370955375\t0.000000000000\t0.000000000000\n-chr1\t4345000\t4346000\tSox17\t978.0\t-142000\t0.000000000000\t0.571035127843\t0.000000000000\t0.000000000000\n-chr1\t4346000\t4347000\tSox17\t978.0\t-141000\t0.000000000000\t0.562577575480\t0.000000000000\t0.000000000000\n-chr1\t4347000\t4348000\tSox17\t978.0\t-140000\t0.000000000000\t0.845939027270\t0.000000000000\t0.000000000000\n-chr1\t4348000\t4349000\tSox17\t978.0\t-139000\t0.000000000000\t0.993879662368\t0.000000000000\t0.000000000000\n-chr1\t4349000\t4350000\tSox17\t978.0\t-138000\t0.000000000000\t0.935848644545\t0.000000000000\t0.000000000000\n-chr1\t4350000\t4351000\tSox17\t978.0\t-137000\t0.000000000000\t0.934280976005\t0.000000000000\t0.000000000000\n-chr1\t4351000\t4352000\tSox17\t978.0\t-136000\t0.000000000000\t0.765933322800\t0.000000000000\t0.000000000000\n-chr1\t4352000\t4353000\tSox17\t978.0\t-135000\t0.000000000000\t0.494942888612\t0.000000000000\t0.000000000000\n-chr1\t4353000\t4354000\tSox17\t978.0\t-134000\t0.000000000000\t0.675370356213\t0.000000000000\t0.000000000000\n-chr1\t4354000\t4355000\tSox17\t978.0\t-133000\t0.000000000000\t0.740631235201\t0.000000000000\t0.000000000000\n-chr1\t4355000\t4356000\tSox17\t978.0\t-132000\t0.000000000000\t0.812828874743\t0.000000000000\t0.000000000000\n-chr1\t4356000\t4357000\tSox17\t978.0\t-131000\t0.000000000000\t0.815309879139\t0.000000000000\t0.000000000000\n+chr1\t4343000\t4344000\tSox17\t978.0\t-144000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4344000\t4345000\tSox17\t978.0\t-143000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4345000\t4346000\tSox17\t978.0\t-142000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4346000\t4347000\tSox17\t978.0\t-141000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4347000\t4348000\tSox17\t978.0\t-140000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4348000\t4349000\tSox17\t978.0\t-139000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4349000\t4350000\tSox17\t978.0\t-138000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4350000\t4351000\tSox17\t978.0\t-137000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4351000\t4352000\tSox17\t978.0\t-136000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4352000\t4353000\tSox17\t978.0\t-135000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n+chr1\t4353000\t4354"..b'0.000613496933\t0.000000000000\t0.804549297394\t0.600000000000\n+chr1\t4661000\t4662000\tSox17\t978.0\t174000\t0.000204498978\t0.000000000000\t0.283827112984\t0.200000000000\n chr1\t4662000\t4663000\tSox17\t978.0\t175000\t0.000000000000\t1.000000000000\t0.000000000000\t0.000000000000\n-chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t1.000000000000\t0.579731975542\t0.400000000000\n+chr1\t4663000\t4664000\tSox17\t978.0\t176000\t0.000408997955\t0.000000000000\t0.579731975542\t0.400000000000\n chr1\t4664000\t4665000\tSox17\t978.0\t177000\t0.001022494888\t0.000000000000\t1.548147889979\t1.000000000000\n chr1\t4665000\t4666000\tSox17\t978.0\t178000\t0.001022494888\t0.000000000000\t1.606568565531\t1.000000000000\n chr1\t4666000\t4667000\tSox17\t978.0\t179000\t0.001226993865\t0.000000000000\t1.964956938139\t1.200000000000\n chr1\t4667000\t4668000\tSox17\t978.0\t180000\t0.001226993865\t0.000000000000\t2.074675343272\t1.200000000000\n chr1\t4668000\t4669000\tSox17\t978.0\t181000\t0.001022494888\t0.000000000000\t1.737717018021\t1.000000000000\n-chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t1.000000000000\t0.732457065928\t0.400000000000\n-chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t1.000000000000\t1.064351673689\t0.600000000000\n-chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t1.000000000000\t1.329141603840\t0.800000000000\n-chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t1.000000000000\t1.309971292093\t0.800000000000\n-chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t1.000000000000\t1.449329938854\t0.800000000000\n+chr1\t4669000\t4670000\tSox17\t978.0\t182000\t0.000408997955\t0.000000000000\t0.732457065928\t0.400000000000\n+chr1\t4670000\t4671000\tSox17\t978.0\t183000\t0.000613496933\t0.000000000000\t1.064351673689\t0.600000000000\n+chr1\t4671000\t4672000\tSox17\t978.0\t184000\t0.000817995910\t0.000000000000\t1.329141603840\t0.800000000000\n+chr1\t4672000\t4673000\tSox17\t978.0\t185000\t0.000817995910\t0.000000000000\t1.309971292093\t0.800000000000\n+chr1\t4673000\t4674000\tSox17\t978.0\t186000\t0.000817995910\t0.000000000000\t1.449329938854\t0.800000000000\n chr1\t4674000\t4675000\tSox17\t978.0\t187000\t0.001226993865\t0.000000000000\t2.209248880021\t1.200000000000\n chr1\t4675000\t4676000\tSox17\t978.0\t188000\t0.001022494888\t0.000000000000\t1.821350457987\t1.000000000000\n-chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t1.000000000000\t1.584151329559\t0.800000000000\n+chr1\t4676000\t4677000\tSox17\t978.0\t189000\t0.000817995910\t0.000000000000\t1.584151329559\t0.800000000000\n chr1\t4677000\t4678000\tSox17\t978.0\t190000\t0.001022494888\t0.000000000000\t1.991769215618\t1.000000000000\n chr1\t4678000\t4679000\tSox17\t978.0\t191000\t0.001226993865\t0.000000000000\t2.270616904920\t1.200000000000\n-chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t1.000000000000\t1.497110047078\t0.800000000000\n+chr1\t4679000\t4680000\tSox17\t978.0\t192000\t0.000817995910\t0.000000000000\t1.497110047078\t0.800000000000\n chr1\t4680000\t4681000\tSox17\t978.0\t193000\t0.001022494888\t0.000000000000\t2.027336523322\t1.000000000000\n-chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t1.000000000000\t1.574994385387\t0.800000000000\n-chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t1.000000000000\t1.253714856445\t0.600000000000\n-chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t1.000000000000\t0.417904952148\t0.200000000000\n+chr1\t4681000\t4682000\tSox17\t978.0\t194000\t0.000817995910\t0.000000000000\t1.574994385387\t0.800000000000\n+chr1\t4682000\t4683000\tSox17\t978.0\t195000\t0.000613496933\t0.000000000000\t1.253714856445\t0.600000000000\n+chr1\t4683000\t4684000\tSox17\t978.0\t196000\t0.000204498978\t0.000000000000\t0.417904952148\t0.200000000000\n chr1\t4684000\t4685000\tSox17\t978.0\t197000\t0.001022494888\t0.000000000000\t1.935184862473\t1.000000000000\n-chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t1.000000000000\t1.335657003912\t0.800000000000\n+chr1\t4685000\t4686000\tSox17\t978.0\t198000\t0.000817995910\t0.000000000000\t1.335657003912\t0.800000000000\n chr1\t4686000\t4687000\tSox17\t978.0\t199000\t0.001022494888\t0.000000000000\t1.783206992633\t1.000000000000\n chr1\t4687000\t4688000\tSox17\t978.0\t200000\t0.001363326517\t0.000000000000\t2.316956024029\t1.333333333333\n' |
