| Previous changeset 0:762009a91895 (2018-12-15) Next changeset 2:5fd94d2e8a83 (2018-12-17) |
|
Commit message:
Uploaded |
|
modified:
IMSAME/IMSAME.xml |
| b |
| diff -r 762009a91895 -r 7fff03d777dd IMSAME/IMSAME.xml --- a/IMSAME/IMSAME.xml Sat Dec 15 18:04:10 2018 -0500 +++ b/IMSAME/IMSAME.xml Mon Dec 17 12:11:52 2018 -0500 |
| b |
| @@ -1,15 +0,0 @@ -<tool id="IMSAME" name="IMSAME"> - <description>A Pairwise Incremental Multi-Staged Alignment Method for Metagenomes Comparison</description> - <inputs> - <param name="query" type="data" format="fasta" label="Query metagenome" help="Query sequence file in fasta format" /> - <param name="db" type="data" format="fasta" label="Reference metagenome" help="Reference sequence file in fasta format" /> - <param name="evalue" type="text" size="30" value="10e-10" label="Evalue" help="Evalue for filtering HSPs" /> - <param name="coverage" type="float" value="0.5" label="Coverage" help="Minimum coverage to accept an alignment" /> - <param name="identity" type="float" value="0.5" label="Identity" help="Minimum identity to accept an alignment" /> - <param name="kmer" type="integer" value="12" label="Word size" help="Word size for heuristicly exploring the search space" /> - </inputs> - <command>/home/galaxy-bitlab/galaxy/tools/IMSAME/bin/IMSAME -query $query -db $db -evalue $evalue -coverage $coverage -identity $identity -kmer $kmer -out $output --full</command> - <outputs> - <data name="output" type="txt" label="Output alignments"/> - </outputs> -</tool> |