| Next changeset 1:04871c6242d2 (2015-10-06) |
|
Commit message:
Uploaded |
|
added:
sed-fasta.xml |
| b |
| diff -r 000000000000 -r 80f990fb3ba6 sed-fasta.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/sed-fasta.xml Tue Oct 06 12:53:24 2015 -0400 |
| b |
| @@ -0,0 +1,15 @@ +<tool id="cat_list" name="remove leading characters in fasta downloaded from ncbi to match genbank locus tag"> + <description>tail-to-head</description> + <command> + cat $input1 | sed 's/gi.*gb\|//g' | sed 's/\|//g' >> $out_file1 </command> + <inputs> + <param name="input1" type="data" label="remove gi to gb characters" multiple="true" /> + </inputs> + <outputs> + <data name="out_file1" format="input" metadata_source="input1"/> + </outputs> + <tests> + </tests> + <help> + </help> +</tool> |