| Previous changeset 0:a9447e4a5634 (2018-07-17) Next changeset 2:a54fa2c9503f (2018-07-20) |
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Commit message:
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/gfa_to_fa commit 1a253e02d30317fb231294b55291df79b1cda568 |
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modified:
gfa_to_fa.xml |
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| diff -r a9447e4a5634 -r 810d464f9359 gfa_to_fa.xml --- a/gfa_to_fa.xml Tue Jul 17 10:31:08 2018 -0400 +++ b/gfa_to_fa.xml Tue Jul 17 13:35:44 2018 -0400 |
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| @@ -1,20 +1,18 @@ <tool id="gfa_to_fa" name="GFA to Fasta" version="0.1.0"> <description>Convert GFA files to Fasta </description> <command detect_errors="exit_code"><![CDATA[ -cat $in_gfa | python $convert > '$out_fa' -]]> - </command> +cat '$in_gfa' | python $convert > '$out_fa' + ]]></command> <configfiles> <configfile name="convert"><![CDATA[ from __future__ import print_function -import sys +import sys for line in sys.stdin: if line.startswith("S"): l,h,s,x = line.strip().split() print("> " + h) print(s) -]]> - </configfile> + ]]></configfile> </configfiles> <inputs> <param name="in_gfa" type="data" format="tabular" label="Input GFA file" /> |