Repository 'samtools_idxstats'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats

Changeset 3:811fc2d75ad4 (2019-07-29)
Previous changeset 2:04d5581db1f5 (2018-09-27) Next changeset 4:7a6034296ae9 (2019-09-06)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_idxstats commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6
modified:
samtools_idxstats.xml
b
diff -r 04d5581db1f5 -r 811fc2d75ad4 samtools_idxstats.xml
--- a/samtools_idxstats.xml Thu Sep 27 09:03:08 2018 -0400
+++ b/samtools_idxstats.xml Mon Jul 29 08:48:46 2019 -0400
[
@@ -7,8 +7,9 @@
     <expand macro="stdio"/>
     <expand macro="version_command"/>
     <command><![CDATA[
-        @PREPARE_IDX@
-        samtools idxstats infile > '${output}'
+@ADDTHREADS@
+@PREPARE_IDX@
+samtools idxstats -@ \$addthreads infile  > '${output}'
     ]]></command>
     <inputs>
         <param name="input" type="data" format="bam,cram" label="BAM file" />