| Previous changeset 4:cb56cc1d5c39 (2016-03-21) Next changeset 6:a73c48890bde (2017-06-06) |
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Commit message:
Bug fix to pal_filter.py. |
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modified:
pal_filter.py |
| b |
| diff -r cb56cc1d5c39 -r 8159dab5dbdb pal_filter.py --- a/pal_filter.py Mon Mar 21 06:52:43 2016 -0400 +++ b/pal_filter.py Tue Apr 12 05:53:41 2016 -0400 |
| b |
| @@ -456,8 +456,10 @@ # check that both primer sequences can be seen in the # assembled contig - if y or ReverseComplement1(y) in assembly_no_id and z or \ - ReverseComplement1(z) in assembly_no_id: + if ((y in assembly_no_id) or \ + (ReverseComplement1(y) in assembly_no_id)) and \ + ((z in assembly_no_id) or \ + (ReverseComplement1(z) in assembly_no_id)): if y in assembly_no_id: # get the positions of the primers in the assembly # (can be used to predict fragment length) |