| Next changeset 1:2a598c0aa042 (2019-05-10) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snap commit 2896dcfd180800d00ea413a59264ef8b11788b8e |
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added:
macros.xml snap_training.xml test-data/annot.gff3 test-data/annot_aa.fasta test-data/annot_tx.fasta test-data/human.fa test-data/snap.hmm test-data/snap_annot.gff |
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| diff -r 000000000000 -r 821bf8bc5623 macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Fri Oct 20 03:51:58 2017 -0400 |
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| @@ -0,0 +1,17 @@ +<?xml version="1.0"?> +<macros> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@VERSION@">snap</requirement> + <yield /> + </requirements> + </xml> + + <token name="@VERSION@">2013_11_29</token> + + <xml name="citations"> + <citations> + </citations> + </xml> + +</macros> |
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| diff -r 000000000000 -r 821bf8bc5623 snap_training.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/snap_training.xml Fri Oct 20 03:51:58 2017 -0400 |
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| @@ -0,0 +1,39 @@ +<?xml version="1.0"?> +<tool id="snap_training" name="Train SNAP" profile="16.04" version="@VERSION@"> + <description>ab-initio gene predictor</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"> + <requirement type="package" version="2.31.9">maker</requirement> + </expand> + <command><![CDATA[ + cp '${maker_gff}' input.gff3 && + echo "\##FASTA" >> input.gff3 && + cat '${genome}' >> input.gff3 && + maker2zff input.gff3 && + fathom -categorize ${gene_num} genome.ann genome.dna && + fathom -export ${gene_num} -plus uni.ann uni.dna && + forge export.ann export.dna && + hmm-assembler.pl snap_training . > '${output}' + ]]></command> + <inputs> + <param name="genome" type="data" format="fasta" label="Genome to annotate"/> + <param name="maker_gff" type="data" format="gff" label="Maker annotation to use for training"/> + <param name="gene_num" type="integer" value="1000" label="Number of gene model to use for training"/> + </inputs> + <outputs> + <data format="snaphmm" name="output" label="${tool.name} on ${on_string}: SNAP trained model"/> + </outputs> + <tests> + <test> + <param name="genome" value="human.fa"/> + <param name="maker_gff" value="annot.gff3"/> + <output name="output" compare="sim_size" file="snap.hmm"/> + </test> + </tests> + <help><![CDATA[ + This tool allows to train SNAP (an ab-initio gene predictor) based on a previous prediction made with Maker. + ]]></help> + <expand macro="citations"/> +</tool> |
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| diff -r 000000000000 -r 821bf8bc5623 test-data/annot.gff3 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/annot.gff3 Fri Oct 20 03:51:58 2017 -0400 |
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| @@ -0,0 +1,41 @@ +##gff-version 3 +HS08198 maker gene 352 1848 . + . ID=maker-HS08198-exonerate_est2genome-gene-0.0;Name=maker-HS08198-exonerate_est2genome-gene-0.0 +HS08198 maker mRNA 352 1848 2869 + . ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1;Parent=maker-HS08198-exonerate_est2genome-gene-0.0;Name=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1;_AED=0.00;_eAED=0.00;_QI=70|1|1|1|0|0|7|0|192 +HS08198 maker exon 352 397 . + . ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:exon:9;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker exon 421 582 . + . ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:exon:10;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker exon 812 894 . + . ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:exon:11;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker exon 1053 1123 . + . ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:exon:12;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker exon 1208 1315 . + . ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:exon:13;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker exon 1587 1688 . + . ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:exon:14;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker exon 1772 1848 . + . ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:exon:15;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker five_prime_UTR 352 397 . + . ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:five_prime_utr;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker five_prime_UTR 421 444 . + . ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:five_prime_utr;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker CDS 445 582 . + 0 ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker CDS 812 894 . + 0 ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker CDS 1053 1123 . + 1 ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker CDS 1208 1315 . + 2 ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker CDS 1587 1688 . + 2 ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +HS08198 maker CDS 1772 1848 . + 2 ID=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS08198-exonerate_est2genome-gene-0.0-mRNA-1 +### +HS04636 maker gene 1813 6903 . + . ID=maker-HS04636-exonerate_est2genome-gene-0.0;Name=maker-HS04636-exonerate_est2genome-gene-0.0 +HS04636 maker mRNA 1813 6903 8728 + . ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1;Parent=maker-HS04636-exonerate_est2genome-gene-0.0;Name=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1;_AED=0.00;_eAED=0.00;_QI=49|1|1|1|0|0|9|0|572 +HS04636 maker exon 1813 1934 . + . ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:exon:0;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker exon 2055 2198 . + . ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:exon:1;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker exon 2852 2995 . + . ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:exon:2;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker exon 3426 3607 . + . ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:exon:3;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker exon 4340 4423 . + . ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:exon:4;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker exon 4543 4789 . + . ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:exon:5;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker exon 5072 5358 . + . ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:exon:6;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker exon 5860 6007 . + . ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:exon:7;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker exon 6494 6903 . + . ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:exon:8;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker five_prime_UTR 1813 1861 . + . ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:five_prime_utr;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker CDS 1862 1934 . + 0 ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker CDS 2055 2198 . + 2 ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker CDS 2852 2995 . + 2 ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker CDS 3426 3607 . + 2 ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker CDS 4340 4423 . + 0 ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker CDS 4543 4789 . + 0 ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker CDS 5072 5358 . + 2 ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker CDS 5860 6007 . + 0 ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +HS04636 maker CDS 6494 6903 . + 2 ID=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1:cds;Parent=maker-HS04636-exonerate_est2genome-gene-0.0-mRNA-1 +### |
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| diff -r 000000000000 -r 821bf8bc5623 test-data/annot_aa.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/annot_aa.fasta Fri Oct 20 03:51:58 2017 -0400 |
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| @@ -0,0 +1,19 @@ +>HS04636-snap.1 +MSYKCDCTRTGFYGENCSTPEFLTRIKLFLKPTPNTVHYILTHFKGFWNV +VNNIPFLRNAIMSYVLTSRSHLIDSPPTYNADYGYKSWEAFSNLSYYTRA +LPPVPDDCPTPLGVKGKKQLPDSNEIVEKLLLRRKFIPDPQGSNMMFAFF +AQHFTHQFFKTDHKRGPAFTNGLGHGVDLNHIYGETLARQRKLRLFKDGK +MKYQIIDGEMYPPTVKDTQAEMIYPPQVPEHLRFAVGQEVFGLVPGLMMY +ATIWLREHNRVCDVLKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQH +LSGYHFKLKFDPELLFNKQFQYQNRIAAEFNTLYHWHPLLPDTFQIHDQK +YNYQQFIYNNSILLEHGITQFVESFTRQIAGRVAGGRNVPPAVQKVSQAS +IDQSRQMKYQSFNEYRKRFMLKPYESFEELTGEKEMSAELEALYGDIDAV +ELYPALLVEKPRPDAIFGETMVEVGAPFSLKGLMGNVICSPAYWKPSTFG +GEVGFQIINTASIQSLICNNVKGCPFTSFSVPDPELIKTVTINASSSRSG +LDDINPTVLLKERSTEL* +>HS08198-snap.1 +MNPSCHPAAATMLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPK +ANFDAQQEQGHRAEATTLHVAPQGTAMAPVVPPPRPPRDGICWQVRQLYG +DTGVLGRFLLQARGARGAVHVVVAETDYQSFAVLYLERAGQLSVKLYARS +LPVSDSVLSGFEQRVQEAHLTEDQIFYFPKYGFCEAADQFHVLDGECTAG +ASMAAW* |
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| diff -r 000000000000 -r 821bf8bc5623 test-data/annot_tx.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/annot_tx.fasta Fri Oct 20 03:51:58 2017 -0400 |
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| @@ -0,0 +1,42 @@ +>HS04636-snap.1 +atgagttataagtgcgattgtacccggacaggattctatggagaaaactgctcaacaccg +gaatttttgacaagaataaaattatttctgaaacccactccaaacacagtgcactacata +cttacccacttcaagggattttggaacgttgtgaataacattcccttccttcgaaatgca +attatgagttatgtcttgacatccagatcacatttgattgacagtccaccaacttacaat +gctgactatggctacaaaagctgggaagccttctctaacctctcctattatactagagcc +cttcctcctgtgcctgatgattgcccgactcccttgggtgtcaaaggtaaaaagcagctt +cctgattcaaatgagattgtggaaaaattgcttctaagaagaaagttcatccctgatccc +cagggctcaaacatgatgtttgcattctttgcccagcacttcacgcatcagtttttcaag +acagatcataagcgagggccagctttcaccaacgggctgggccatggggtggacttaaat +catatttacggtgaaactctggctagacagcgtaaactgcgccttttcaaggatggaaaa +atgaaatatcagataattgatggagagatgtatcctcccacagtcaaagatactcaggca +gagatgatctaccctcctcaagtccctgagcatctacggtttgctgtggggcaggaggtc +tttggtctggtgcctggtctgatgatgtatgccacaatctggctgcgggaacacaacaga +gtatgcgatgtgcttaaacaggagcatcctgaatggggtgatgagcagttgttccagaca +agcaggctaatactgataggagagactattaagattgtgattgaagattatgtgcaacac +ttgagtggctatcacttcaaactgaaatttgacccagaactacttttcaacaaacaattc +cagtaccaaaatcgtattgctgctgaatttaacaccctctatcactggcatccccttctg +cctgacacctttcaaattcatgaccagaaatacaactatcaacagtttatctacaacaac +tctatattgctggaacatggaattacccagtttgttgaatcattcaccaggcaaattgct +ggcagggttgctggtggtaggaatgttccacccgcagtacagaaagtatcacaggcttcc +attgaccagagcaggcagatgaaataccagtcttttaatgagtaccgcaaacgctttatg +ctgaagccctatgaatcatttgaagaacttacaggagaaaaggaaatgtctgcagagttg +gaagcactctatggtgacatcgatgctgtggagctgtatcctgcccttctggtagaaaag +cctcggccagatgccatctttggtgaaaccatggtagaagttggagcaccattctccttg +aaaggacttatgggtaatgttatatgttctcctgcctactggaagccaagcacttttggt +ggagaagtgggttttcaaatcatcaacactgcctcaattcagtctctcatctgcaataac +gtgaagggctgtccctttacttcattcagtgttccagatccagagctcattaaaacagtc +accatcaatgcaagttcttcccgctccggactagatgatatcaatcccacagtactacta +aaagaacgttcgactgaactgtag +>HS08198-snap.1 +atgaacccctcctgccaccctgctgccgccaccatgctgccccctgggactgcgaccctc +ttgactctgctcctggcagctggctcgctgggccagaagcctcagaggccacgccggccc +gcatcccccatcagcaccatccagcccaaggccaattttgatgcgcagcaggagcagggc +caccgggccgaggccaccacactgcatgtggctccccagggcacagccatggctcctgtg +gtgcctcctccccgcccccccagggatgggatctgctggcaggtgcgccagctctatgga +gacacaggggtcctcggccgcttcctgcttcaagcccgaggcgcccgaggggctgtgcac +gtggttgtcgctgagaccgactaccagagtttcgctgtcctgtacctggagcgggcgggg +cagctgtcagtgaagctctacgcccgctcgctccctgtgagcgactcggtcctgagtggg +tttgagcagcgggtccaggaggcccacctgactgaggaccagatcttctacttccccaag +tacggcttctgcgaggctgcagaccagttccacgtcctggacggtgagtgcacagcgggg +gcaagcatggcggcgtggtga |
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| diff -r 000000000000 -r 821bf8bc5623 test-data/human.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/human.fa Fri Oct 20 03:51:58 2017 -0400 |
| b |
| b'@@ -0,0 +1,200 @@\n+>HS04636\n+gagctcacattaactatttacagggtaactgcttaggaccagtattatgaggagaattta\n+cctttcccgcctctctttccaagaaacaaggagggggtgaaggtacggagaacagtattt\n+cttctgttgaaagcaacttagctacaaagataaattacagctatgtacactgaaggtagc\n+tatttcattccacaaaataagagttttttaaaaagctatgtatgtatgtgctgcatatag\n+agcagatatacagcctattaagcgtcgtcactaaaacataaaacatgtcagcctttctta\n+accttactcgccccagtctgtcccgacgtgacttcctcgaccctctaaagacgtacagac\n+cagacacggcggcggcggcgggagaggggattccctgcgcccccggacctcagggccgct\n+cagattcctggagaggaagccaagtgtccttctgccctcccccggtatcccatccaaggc\n+gatcagtccagaactggctctcggaagcgctcgggcaaagactgcgaagaagaaaagaca\n+tctggcggaaacctgtgcgcctggggcggtggaactcggggaggagagggagggatcaga\n+caggagagtggggactaccccctctgctcccaaattggggcagcttcctgggtttccgat\n+tttctcatttccgtgggtaaaaaaccctgcccccaccgggcttacgcaatttttttaagg\n+ggagaggagggaaaaaatttgtgggggggtacgaaaaggcggaaagaaacagtcattcac\n+atgggcttggttttcagtcttataaaaaggaaggttctctcggttagcgaccaattgtca\n+tacgacttgcagtgagcgtcaggagcacgtccaggaactcctcagcagcgcctccttcag\n+ctccacagccagacgccctcagacagcaaagcctacccccgcgccgcgccctgcccgccg\n+ctcggatgctcgcccgcgccctgctgctgtgcgcggtcctggcgctcagccatacaggtg\n+agtacctggcgccgcgcaccggggactccggttccacgcacccgggcagagtttccgctc\n+tgacctcctgggtctatcccagtactccgacttctctccgaatagagaagctacgtgact\n+tgggaaagagcttggaccgctagagtccgaaagaactccgtggatattccagctttccca\n+caagcactgatcattatgagccagttacttaaccgatctgagacactctcacctcctaaa\n+tagggatagatgatactaatttgcaggttgtcattatgataagacaggatctgatcaata\n+tatgtgaattgtttatatttggaacctttttattgagtggaagaagttgttttaaatatt\n+ctagtcagttctttcctgctcccaggaaagcccggattatgttttaagataagcaaaatg\n+tcttaaaagtaagctgttttactttgaatttttccctaaatgttgattagtgtactagat\n+ccattttaatttggaaagtgaagtgctacttatttgaacttcttaaaaatgctaatttta\n+acatctaaagagttaactaagaaaagcttagtaacatgatgtaccaagttgaatatgctg\n+ttatccttatttagaatagaaaattggtatttctacgttttatccattctaaggcaggtt\n+aaaaaattgtatttccatgactacctatatatttcttgaatttattattgtaaagttgat\n+tcatagtcaaacaattaaatgtttaaattaagattaagacactagagaatgatttatttg\n+ctgtcctttaattgcagcaaatccttgctgttcccacccatgtcaaaaccgaggtgtatg\n+tatgagtgtgggatttgaccagtataagtgcgattgtacccggacaggattctatggaga\n+aaactgctcaacacgtaagtttgtcctttggttgcctcattaggagtggggctggataca\n+gttatcattgtatagatttgtgtcttataatgagtcccattaatttctccctccctttct\n+tcgtcttcttgcagcggaatttttgacaagaataaaattatttctgaaacccactccaaa\n+cacagtgcactacatacttacccacttcaagggattttggaacgttgtgaataacattcc\n+cttccttcgaaatgcaattatgagttatgtcttgacatgtaagtacaagtgtctttctaa\n+ggtttttagccttctcaaagaaaaatatgctttataatactgtaagcctaatctaaaaac\n+atatttccaagcttatcaaaaagactttaagatagcttttaagtttgccttccatcttaa\n+tcgccaaaaatattgacatttagtcccatccagtttatacagtctgctcacaactctgta\n+tacctcttctaacctttactgtttggtcagtttgtggaggtagcatggtccagctgttta\n+ttgaatgcccatgggccacagaattgttctgaacatgtagcacccattaaaataaatttg\n+gatttggatcagcaagaaaataactttccatgattctaaagtgggtgccatactcagcca\n+ttcctttcataggcctcttggatagtgagcagatggctacctgaaaaatcaatattgcca\n+gattataatgtgcagagtatatgtattttattaaagatgtatttcaagtggccattagac\n+tataaagtgtagttgtttaaaaatagattttttttattttggagttacattcaacctcag\n+gtgccactttccacattttacaataaaaataatggttgatttacttaacaaatgagaata\n+aataaaacatttttttctttgaaaatttcagccagatcacatttgattgacagtccacca\n+acttacaatgctgactatggctacaaaagctgggaagccttctctaacctctcctattat\n+actagagcccttcctcctgtgcctgatgattgcccgactcccttgggtgtcaaaggtgag\n+taagaagaatccattagagatgtattaactataagacgggctgcattgctgccaaaaaaa\n+aaaattgaccttagactaccatttatttattaacaaaagcagtttttacttttagcatgg\n+ttatctatgggtattttttaaagtatgagtctatataaactattatgtaaaagcaaatga\n+gcgtcttggtataatgtcttaatattttcaaattatttctttagaaatgaaataattcta\n+attaaaatagataaaatcattcagtaagaagttgttccaccatatcttagaactgttgtt\n+tatattatgatcctattcacaattgtaattctcatataaatgaagaattcttggtagatt\n+gacagtcaccatctcctttcttgaatacatagatggattcttaccttagctttctcattt\n+ttcaggtaaaaagcagcttcctgattcaaatgagattgtggaaaaattgcttctaagaag\n+aaagttcatccctgatccccagggctcaaacatgatgtttgcattctttgcccagcactt\n+cacgcatcagtttttcaagacagatcataagcgagggccagctttcaccaacgggctggg\n+ccatggggtaagatagagttaatatcttagagttagtaaaattataccaaatcatagtca\n+agggctaacattaaaggagatatacagatagatagatccaaataacttatccactttttt\n+taaaaagaagtcttatctataaaaaccttaaaggaattttccatttacttcactggtcta\n+gtaaaattatacacacacacagacatgcacacacatatataaacattcacacacatacat\n+at'..b'ccaagctgtgcttgaataacgatatgttttctcagattttc\n+tgttgtacagtttaatttagcagtccatatcacattgcaaaagtagcaatgacctcataa\n+aatacctcttcaaaatgcttaaattcatttcacacattaattttatctcagtcttgaagc\n+caattcagtaggtgcattggaatcaagcctggctacctgcatgctgttccttttcttttc\n+ttcttttagccattttgctaagagacacagtcttctcatcacttcgtttctcctattttg\n+ttttactagttttaagatcagagttcactttctttggactctgcctatattttcttacct\n+gaacttttgcaagttttcaggtaaacctcagctcaggactgctatttagctcctcttaag\n+aagattaaaagagaaaaaaaaaggcccttttaaaaatagtatacacttattttaagtgaa\n+aagcagagaattttatttatagctaattttagctatctgtaaccaagatggatgcaaaga\n+ggctagtgcctcagagagaactgtacggggtttgtgactggaaaaagttacgttcccatt\n+ctaattaatgccctttcttatttaaaaacaaaaccaaatgatatctaagtagttctcagc\n+aataataataatgacgataatacttcttttccacatctcattgtcactgacatttaatgg\n+tactgtatattacttaatttattgaagattattatttatgtcttattaggacactatggt\n+tataaactgtgtttaagcctacaatcattgatttttttttgttatgtcacaatcagtata\n+ttttctttggggttacctctctgaatattatgtaaacaatccaaagaaatgattgtatta\n+agatttgtgaataaatttttagaaatctgattggcatattgagatatttaaggttgaatg\n+tttgtccttaggataggcctatgtgctagcccacaaagaatattgtctcattagcctgaa\n+tgtgccataagactgaccttttaaaatgttttgagggatctgtggatgcttcgttaattt\n+gttcagccacaatttattgagaaaatattctgtgtcaagcactgtgggttttaatatttt\n+taaatcaaacgctgattacagataatagtatttatataaataattgaaaaaaattttctt\n+ttgggaagagggagaaaatgaaataaatatcattaaagataactcaggagaatcttcttt\n+acaattttacgtttagaatgtttaaggttaagaaagaaatagtcaatatgcttgtataaa\n+acactgttcactgttttttttaaaaaaaaaacttgatttgttattaacattgatctgctg\n+acaaaacctgggaatttgggttgtgtatgcgaatgtttcagtgcctcagacaaatgtgta\n+tttaacttatgtaaaagataagtctggaaataaatgtctgtttatttttgtactatttaa\n+aaaaaaaaaaaaaaatcgatgtcgactcgagtc\n+>HS08198\n+agcgggcggcggtcgtgggcggggttgcaggcgaggctcaacgaacgctggtctgaccgt\n+cggcgctccctgttgccgggccctgagcaagtggcttcatgaaccccgtgacgttggcca\n+tggagataagaccactgggtgatggtttaaggaagataacgtgtaaagggctaaggactg\n+tcggtggaaatcaggggtgcaggagaaatggataaacagccagaggtcaactcggacttt\n+gtacataggacatggtgccaggccctgccaggaagtgcagatcgaagctaggctcacgag\n+gaggctggaggtggggggtggggaggcaacggatggacatggacttcctgggctgggctc\n+tgtgacagcagagtagactctgtcctgggacttggtggtgctacccttggcctcccacag\n+tcctgccaccctgctgccgccaccatgctgccccctgggactgcgaccctcttgactctg\n+ctcctggcagctggctcgctgggccagaagcctcagaggccacgccggcccgcatccccc\n+atcagcaccatccagcccaaggccaattttgatgcgcagcaggtagaagttggggggggt\n+agagggaggcaggtagaagttgtgggaggggtagagggagacaggtagaagttgttgcgg\n+gggagagggaagcaggtgaagttgtggggggtgtagagggaagcaggtgaggggccctcc\n+cacagtgccctcgagttctcccatggtctgcccccagtttgcagggacctggctccttgt\n+ggctgtgggctccgcttgccgtttcctgcaggagcagggccaccgggccgaggccaccac\n+actgcatgtggctccccagggcacagccatggctgtcagtaccttccgaaagctgtgagt\n+cccagagcagccctgcaccctaaccccaaccctcctctcagcccccggacttcagccctg\n+ctctggcccctgaccccaccccggctgtggcctggactaggattcctggttggggtctcc\n+cagcctgtggtgcctcctccccgcccccccagggatgggatctgctggcaggtgcgccag\n+ctctatggagacacaggggtcctcggccgcttcctgcttcaaggtgaggcaggggctgca\n+ggtcatgtgggtgggggatgacgcagccactgtggctctctgacatggctactgtggctc\n+tgcccagcccgaggcgcccgaggggctgtgcacgtggttgtcgctgagaccgactaccag\n+agtttcgctgtcctgtacctggagcgggcggggcagctgtcagtgaagctctacggtatg\n+tgggggccagcctctgtgaccaggcaggcgctcaagctctgcacactcactgggccaccc\n+cgaggggctgggtgagccatggggacacacttcctttctcccatcctgatcctcctgcta\n+agcaggggcccagggagtagtgacagacaggcctggtgtgggagcagggaggagggcccc\n+gaggggcaggggacacacagaccccgttcccagagccctccacgccgcctggtgccagga\n+ccccaggaaccctgtctgccctgcagcccgctcgctccctgtgagcgactcggtcctgag\n+tgggtttgagcagcgggtccaggaggcccacctgactgaggaccagatcttctacttccc\n+caagtacggtgagtgtccccagcaggtccccagctcagccacccccactctctggctgat\n+gtccagcctgacccctgccttggcgccccaggcttctgcgaggctgcagaccagttccac\n+gtcctggacggtgagtgcacagcgggggcaagcatggcggcgtggtgaggggggccactc\n+gcaccggctgagtctcgtctctgctgcagaagtgaggaggtgaggccggcacacagctcc\n+agtgctgagaagtcagtgccccgagagacgaccccaccagtggggtgcccgctgcctgtc\n+ctccgtgaaaccagcctcagatcagggccctgccacccagggcaggggatcttctgccgg\n+ctgccccagaggacagtgggtggagtggtacctacttattaaatgtctcagacccctctc\n+tgactcttctgtccactctggaccggcgccagtaccaccaaggccctctctgcccccacc\n+ccgcctctttaaaagcccggcgctccctgttggctggagtccacgcagggtcactgggcc\n+gatttcggctcttgggatttgggaggggagatcctctctggcatatgccatcttgtgccc\n+tgctggacctgggggcgtccacgtcactccaaggctgctcttgcctgggccatgcctgca\n+gccc\n' |
| b |
| diff -r 000000000000 -r 821bf8bc5623 test-data/snap.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/snap.hmm Fri Oct 20 03:51:58 2017 -0400 |
| b |
| b'@@ -0,0 +1,1612 @@\n+zoeHMM snap_training 6 8 6 7\n+\n+<STATES>\n+\n+Einit\t0\t0\t3\t-1\texplicit\n+Esngl\t0\t0\t150\t-1\texplicit\n+Eterm\t0\t0\t3\t-1\texplicit\n+Exon\t0\t0\t6\t-1\texplicit\n+Inter\t0.9\t0.9\t0\t0\tgeometric\n+Intron\t0.1\t0.1\t0\t0\tgeometric\n+\n+<STATE_TRANSITIONS>\n+\n+Einit\tIntron\t1\n+Esngl\tInter\t1\n+Eterm\tInter\t1\n+Exon\tIntron\t1\n+Inter\tEinit\t1.000000\n+Inter\tEsngl\t0.000000\n+Intron\tEterm\t0.153846\n+Intron\tExon\t0.846154\n+\n+<PHASE_PREFERENCES>\n+\n+0.500000\n+0.500000\n+0.000000\n+0.333333\n+0.666667\n+0.000000\n+0.571429\n+0.428571\n+0.000000\n+0.000000\n+1.000000\n+0.000000\n+1.000000\n+0.000000\n+0.750000\n+0.250000\n+1.000000\n+0.000000\n+\n+<STATE_DURATIONS>\n+\n+Einit 2\n+\tDEFINED 0 249\n+\t\t-2.459 -2.611 -2.781 -2.974 -3.196 \n+\t\t-3.459 -3.781 -4.196 -4.781 -5.781 \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\t\t. . . . . \n+\tGEOMETRIC 250 -1\n+\t\t3\n+\n+Esngl 1\n+\tGEOMETRIC 0 -1\n+\t\t1000\n+\n+Eterm 2\n+\tDEFINED 0 249\n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -10.052 -9.080 -8.505 -8.095 \n+\t\t-7.776 -7.515 -7.294 -7.102 -6.933 \n+\t\t-6.782 -6.782 -6.782 -6.782 -6.782 \n+\t\t-6.782 -6.782 -6.782 -6.782 -6.782 \n+\t\t-6.782 -6.782 -6.782 -6.782 -6.782 \n+\t\t-6.782 -6.782 -6.782 -6.782 -6.782 \n+\t\t-6.782 -6.782 -6.782 -6.782 -6.782 \n+\t\t-6.782 -6.782 -6.782 -6.782 -6.782 \n+\t\t-6.782 -6.933 -7.102 -7.294 -7.515 \n+\t\t-7.776 -8.095 -8.505 -9.080 -10.052 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\t\t-14.718 -14.718 -14.718 -14.718 -14.718 \n+\tGEOMETRIC 250 -1\n+\t\t668\n+\n+Exon 2\n+\tDEFINED 0 249\n+\t\t-16.777 -16.777 -16.777 -16.777 -16.777 \n+\t\t-16.777 -16.777 -16.777 -16.777 -16.777 \n+\t\t-16.777 -16.777 -16.777 -16.777 -16.777 \n+\t\t-16.777 -16.777 -16.777 -16.777 -16.777 \n+\t\t-16.777 -16.777 -16.777 -16.777 -16.777 \n+\t\t-16.777 -16.777 -16.777 -16.777 -16.777 \n+\t\t-16.777 -16.777 -16.777 -16.777 -16.777'..b'\t\n+\t-1.087\t0.720\t-2.087\t0.720\t\n+\t-0.632\t0.046\t0.368\t0.046\t\n+\t0.497\t-0.503\t0.234\t-0.503\t\n+\t0.348\t-2.459\t0.541\t0.126\t\n+\t0.300\t-0.115\t-1.700\t0.621\t\n+\t0.559\t0.074\t-0.663\t-0.248\t\n+\t-0.807\t-0.807\t0.515\t0.515\t\n+\t0.652\t-1.807\t0.778\t-1.222\t\n+\t0.263\t0.678\t-1.322\t-0.322\t\n+\t0.752\t0.074\t-1.248\t-0.248\t\n+\t0.585\t-1.000\t-0.585\t0.415\t\n+\t0.000\t0.000\t0.415\t-0.585\t\n+\t-0.222\t1.000\t-1.807\t-0.222\t\n+\t-0.322\t0.678\t-0.322\t-0.322\t\n+\t0.126\t-0.459\t-0.459\t0.541\t\n+\t-0.322\t-0.737\t1.000\t-0.737\t\n+\t0.193\t0.778\t-1.807\t-0.222\t\n+\t-0.939\t0.284\t0.798\t-0.939\t\n+\t-0.322\t0.415\t-0.322\t0.093\t\n+\t-0.737\t-1.322\t0.000\t1.000\t\n+\t-0.459\t0.541\t-1.459\t0.541\t\n+\t-0.807\t-0.392\t-0.392\t0.930\t\n+\t-0.402\t-0.888\t0.376\t0.491\t\n+\t0.925\t-0.561\t-0.713\t-0.298\t\n+\t0.000\t-0.415\t-2.000\t1.000\t\n+\t0.759\t0.300\t-1.115\t-0.700\t\n+\t-0.170\t-0.755\t-0.170\t0.705\t\n+\t-0.070\t-1.392\t0.608\t0.193\t\n+\t0.234\t-0.503\t-1.087\t0.720\t\n+\t-0.585\t-0.585\t1.000\t-0.585\t\n+\t-0.503\t-1.087\t0.497\t0.497\t\n+\t0.052\t-0.433\t0.052\t0.245\t\n+\t0.752\t-0.663\t-2.248\t0.559\t\n+\t0.415\t0.415\t-1.585\t0.000\t\n+\t-0.115\t-0.115\t0.107\t0.107\t\n+\t0.663\t-0.415\t-1.263\t0.322\t\n+\t0.234\t-1.087\t-2.087\t1.082\t\n+\t0.193\t-0.070\t-1.392\t0.608\t\n+\t-0.143\t-2.143\t-0.558\t1.130\t\n+\t0.678\t-0.644\t-0.059\t-0.322\t\n+\t0.585\t0.000\t-1.000\t0.000\t\n+\t-0.737\t0.263\t-0.322\t0.485\t\n+\t0.152\t-0.170\t-0.585\t0.415\t\n+\t-0.737\t0.263\t0.263\t0.000\t\n+\t0.930\t-0.070\t-1.392\t-0.392\t\n+\t-1.170\t1.152\t-1.170\t-0.170\t\n+\t-1.644\t-0.322\t0.678\t0.356\t\n+\t-0.585\t-0.585\t1.000\t-0.585\t\n+\t0.193\t0.778\t-0.807\t-0.807\t\n+\t-0.585\t1.000\t-0.585\t-0.585\t\n+\t0.193\t0.193\t-0.807\t0.193\t\n+\t0.608\t-1.392\t-0.070\t0.193\t\n+\t0.263\t0.678\t-1.322\t-0.322\t\n+\t-0.585\t0.637\t-0.585\t0.152\t\n+\t0.415\t-0.237\t-0.237\t-0.044\t\n+\t0.759\t-1.700\t-0.115\t0.107\t\n+\t0.678\t0.485\t-1.322\t-0.737\t\n+\t-1.322\t0.263\t-0.322\t0.678\t\n+\t0.126\t0.126\t-0.459\t0.126\t\n+\t0.000\t-0.322\t0.678\t-0.737\t\n+\t0.222\t0.000\t-0.585\t0.222\t\n+\t-0.322\t-0.322\t0.678\t-0.322\t\n+\t0.193\t-0.222\t-0.222\t0.193\t\n+\t-1.170\t-1.170\t0.152\t1.000\t\n+\t-1.248\t0.074\t-0.663\t0.922\t\n+\t-0.059\t-0.644\t0.526\t-0.059\t\n+\t-0.524\t0.061\t0.061\t0.284\t\n+\t0.263\t-0.585\t-0.322\t0.415\t\n+\t-0.503\t0.497\t-2.087\t0.720\t\n+\t-0.379\t-0.700\t1.107\t-1.115\t\n+\t-0.193\t-1.000\t-0.678\t1.000\t\n+\t1.037\t-0.700\t-0.963\t-0.285\t\n+\t0.152\t0.152\t-2.170\t0.637\t\n+\t0.245\t-0.170\t-1.170\t0.567\t\n+\t0.255\t-1.248\t-1.248\t0.974\t\n+\t0.515\t-0.222\t0.000\t-0.485\t\n+\t0.798\t-0.939\t-1.524\t0.476\t\n+\t-0.170\t-1.170\t-0.170\t0.830\t\n+\t0.126\t-0.044\t-1.459\t0.656\t\n+\t0.816\t0.163\t-1.059\t-0.644\t\n+\t0.000\t0.585\t-1.000\t0.000\t\n+\t0.263\t-0.737\t-0.737\t0.678\t\n+\t0.227\t-1.358\t-0.188\t0.642\t\n+\t-0.026\t-0.663\t-0.373\t0.691\t\n+\t0.491\t-0.209\t-2.209\t0.598\t\n+\t-0.115\t-1.285\t-0.115\t0.802\t\n+\t0.258\t-1.015\t-0.899\t0.826\t\n+\n+Start SDT 3 0 4 2 0.000\n+\tATG WMM 15 9 4 0 0.000\n+\t\t-0.585\t-0.585\t1.000\t-0.585\t\n+\t\t-0.585\t0.415\t0.415\t-0.585\t\n+\t\t-0.585\t0.415\t-0.585\t0.415\t\n+\t\t-0.585\t-0.585\t1.000\t-0.585\t\n+\t\t-0.585\t0.415\t-0.585\t0.415\t\n+\t\t0.415\t0.415\t-0.585\t-0.585\t\n+\t\t0.415\t-0.585\t-0.585\t0.415\t\n+\t\t-0.585\t0.415\t0.415\t-0.585\t\n+\t\t-0.585\t0.415\t-0.585\t0.415\t\n+\t\t1.000\t-0.585\t-0.585\t-0.585\t\n+\t\t-0.585\t-0.585\t-0.585\t1.000\t\n+\t\t-0.585\t-0.585\t1.000\t-0.585\t\n+\t\t0.415\t0.415\t-0.585\t-0.585\t\n+\t\t-0.585\t-0.585\t0.415\t0.415\t\n+\t\t-0.585\t-0.585\t0.415\t0.415\t\n+\tNNN TRM 0 0 0 0 0.000\n+\n+Stop SDT 3 0 4 4 0.000\n+\tTAA WMM 9 6 4 0 0.000\n+\t\t0.000\t0.000\t0.000\t0.000\t\n+\t\t0.000\t0.000\t0.000\t0.000\t\n+\t\t0.000\t0.000\t0.000\t0.000\t\n+\t\t0.000\t0.000\t0.000\t0.000\t\n+\t\t0.000\t0.000\t0.000\t0.000\t\n+\t\t0.000\t0.000\t0.000\t0.000\t\n+\t\t0.000\t0.000\t0.000\t0.000\t\n+\t\t0.000\t0.000\t0.000\t0.000\t\n+\t\t0.000\t0.000\t0.000\t0.000\t\n+\tTAG WMM 9 6 4 0 0.000\n+\t\t-0.322\t-0.322\t0.678\t-0.322\t\n+\t\t0.678\t-0.322\t-0.322\t-0.322\t\n+\t\t0.678\t-0.322\t-0.322\t-0.322\t\n+\t\t-0.322\t0.678\t-0.322\t-0.322\t\n+\t\t-0.322\t-0.322\t-0.322\t0.678\t\n+\t\t-0.322\t-0.322\t0.678\t-0.322\t\n+\t\t-0.322\t-0.322\t-0.322\t0.678\t\n+\t\t0.678\t-0.322\t-0.322\t-0.322\t\n+\t\t-0.322\t-0.322\t0.678\t-0.322\t\n+\tTGA WMM 9 6 4 0 0.000\n+\t\t-0.322\t-0.322\t0.678\t-0.322\t\n+\t\t-0.322\t0.678\t-0.322\t-0.322\t\n+\t\t-0.322\t-0.322\t0.678\t-0.322\t\n+\t\t-0.322\t-0.322\t-0.322\t0.678\t\n+\t\t-0.322\t-0.322\t0.678\t-0.322\t\n+\t\t-0.322\t-0.322\t0.678\t-0.322\t\n+\t\t-0.322\t-0.322\t-0.322\t0.678\t\n+\t\t-0.322\t-0.322\t0.678\t-0.322\t\n+\t\t0.678\t-0.322\t-0.322\t-0.322\t\n+\tNNN TRM 0 0 0 0 0.000\n+\n' |
| b |
| diff -r 000000000000 -r 821bf8bc5623 test-data/snap_annot.gff --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/snap_annot.gff Fri Oct 20 03:51:58 2017 -0400 |
| b |
| @@ -0,0 +1,17 @@ +HS04636 SNAP Einit 1862 1867 8.523 + . HS04636-snap.1 +HS04636 SNAP Exon 1883 1934 20.348 + . HS04636-snap.1 +HS04636 SNAP Exon 2055 2198 69.846 + . HS04636-snap.1 +HS04636 SNAP Exon 2852 2995 67.055 + . HS04636-snap.1 +HS04636 SNAP Exon 3426 3607 77.942 + . HS04636-snap.1 +HS04636 SNAP Exon 4340 4423 47.588 + . HS04636-snap.1 +HS04636 SNAP Exon 4543 4789 112.472 + . HS04636-snap.1 +HS04636 SNAP Exon 5072 5358 122.974 + . HS04636-snap.1 +HS04636 SNAP Exon 5860 6007 72.046 + . HS04636-snap.1 +HS04636 SNAP Eterm 6494 6903 163.122 + . HS04636-snap.1 +HS08198 SNAP Einit 99 107 -2.800 + . HS08198-snap.1 +HS08198 SNAP Exon 421 582 45.298 + . HS08198-snap.1 +HS08198 SNAP Exon 812 874 24.711 + . HS08198-snap.1 +HS08198 SNAP Exon 1024 1123 34.281 + . HS08198-snap.1 +HS08198 SNAP Exon 1208 1315 53.852 + . HS08198-snap.1 +HS08198 SNAP Exon 1587 1688 41.983 + . HS08198-snap.1 +HS08198 SNAP Eterm 1772 1848 35.796 + . HS08198-snap.1 |