Repository 'snp_to_bed'
hg clone https://toolshed.g2.bx.psu.edu/repos/brigidar/snp_to_bed

Changeset 2:8220dba15923 (2015-12-28)
Previous changeset 1:c5195904b225 (2015-11-09)
Commit message:
drop of first row removed
modified:
snp_to_bed.xml
b
diff -r c5195904b225 -r 8220dba15923 snp_to_bed.xml
--- a/snp_to_bed.xml Mon Nov 09 14:56:21 2015 -0500
+++ b/snp_to_bed.xml Mon Dec 28 12:51:23 2015 -0500
b
@@ -1,7 +1,7 @@
 <tool id="snp_to_bed" name="snp location to bed format" version="0.3">
     <description>convert SNP to interval</description>
     <command>
-        cat $input1 | sed '1d'| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1  </command>
+        cat $input1| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1  </command>
     <inputs>
         <param name="input1" type="data" label="input file"/>
     </inputs>