Previous changeset 2:b07ef36cf7e6 (2018-03-26) |
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfhethom commit 36e9065027cc7bf721e9d203208477ee88906c57" |
modified:
macros.xml vcfhethom.xml |
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diff -r b07ef36cf7e6 -r 8254e0fe7358 macros.xml --- a/macros.xml Mon Mar 26 12:27:11 2018 -0400 +++ b/macros.xml Thu Jan 23 08:09:30 2020 -0500 |
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@@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.0.0_rc1">vcflib</requirement> + <requirement type="package" version="1.0.0_rc3">vcflib</requirement> <yield/> </requirements> </xml> @@ -10,10 +10,10 @@ <exit_code range="1:" level="fatal" /> </stdio> </xml> - <token name="@WRAPPER_VERSION@">1.0.0_rc1</token> - <xml name="citations"> - <citations> - <citation type="bibtex"> + <token name="@WRAPPER_VERSION@">1.0.0_rc3</token> + <xml name="citations"> + <citations> + <citation type="bibtex"> @misc{Garrison2015, author = {Garrison, Erik}, year = {2015}, @@ -22,8 +22,8 @@ journal = {GitHub repository}, url = {https://github.com/ekg/vcflib}, } - </citation> - </citations> - </xml> + </citation> + </citations> + </xml> <token name="@IS_PART_OF_VCFLIB@">is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).</token> </macros> |
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diff -r b07ef36cf7e6 -r 8254e0fe7358 vcfhethom.xml --- a/vcfhethom.xml Mon Mar 26 12:27:11 2018 -0400 +++ b/vcfhethom.xml Thu Jan 23 08:09:30 2020 -0500 |
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@@ -6,15 +6,13 @@ <expand macro="requirements"/> <expand macro="stdio" /> <command> - #if str($analysis_type) == "count": - vcfhetcount "${vcf_input}" > "${out_file1}" - #elif str($analysis_type) == "ratio": - vcfhethomratio "${vcf_input}" > "${out_file1}" + vcfhetcount '${vcf_input}' > '${out_file1}' + #elif str($analysis_type) == "ratio": + vcfhethomratio '${vcf_input}' > '${out_file1}' #elif str($analysis_type) == "allele_count": - vcfcountalleles "${vcf_input}" > "${out_file1}" + vcfcountalleles '${vcf_input}' > '${out_file1}' #end if - </command> <inputs> <param name="analysis_type" type="select" display="radio" label="Select type of calculation:"> |