| Previous changeset 1:199e5afe498d (2018-07-04) Next changeset 3:4432e4183ebd (2018-07-11) |
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Commit message:
planemo upload for repository https://github.com/johnheap/VAPPER-Galaxy |
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modified:
data/congodata.csv data/vivax/TvDatabase.csv data/vivax/geoTv.csv |
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added:
data/ogeoTv.csv |
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removed:
data/geoTv.csv |
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| diff -r 199e5afe498d -r 82770f07a036 data/congodata.csv --- a/data/congodata.csv Wed Jul 04 16:56:54 2018 -0400 +++ b/data/congodata.csv Tue Jul 10 09:22:53 2018 -0400 |
| b |
| b'@@ -1,44 +1,1 @@\n-Strain,P1,P2,P3,P4,P5,P6,P7,P8,P9,P10,P11,P12,P13,P14,P15,Colour\r\n-IL3578,0.06920904,0.050847458,0.039548023,0.012711864,0.066384181,0.13700565,0.103107345,0.005649718,0.019774011,0.035310734,0.107344633,0.076271186,0.080508475,0.049435028,0.146892655,Burkina Faso\r\n-IL2995,0.126126126,0.207207207,0.09009009,0.018018018,0.027027027,0.018018018,0.027027027,0,0.036036036,0.027027027,0.162162162,0.063063063,0.117117117,0.018018018,0.063063063,Burkina Faso\r\n-IL3897,0.120798319,0.108193277,0.085084034,0.011554622,0.050420168,0.053571429,0.06512605,0.015756303,0.013655462,0.028361345,0.125,0.05987395,0.066176471,0.037815126,0.158613445,Burkina Faso\r\n-IL3900,0.147826087,0.135652174,0.116521739,0.022608696,0.076521739,0.036521739,0.029565217,0.005217391,0.027826087,0.046956522,0.173913043,0.050434783,0.076521739,0.034782609,0.019130435,Forest sub-type\r\n-IL3926,0.150234742,0.126760563,0.118935837,0.023474178,0.067292645,0.03286385,0.039123631,0.010954617,0.017214397,0.045383412,0.183098592,0.048513302,0.073552426,0.026604069,0.03599374,Forest sub-type\r\n-IL274,0.102671119,0.116026711,0.08263773,0.014190317,0.08096828,0.081803005,0.050918197,0.003338898,0.016694491,0.02754591,0.126043406,0.040901503,0.063439065,0.028380634,0.164440735,Kenya\r\n-IL2992,0.112690355,0.096446701,0.078172589,0.011167513,0.050761421,0.05786802,0.070050761,0.016243655,0.012182741,0.031472081,0.12893401,0.056852792,0.064974619,0.034517766,0.177664975,Kenya\r\n-IL3000,0.073317308,0.039663462,0.049278846,0.018028846,0.060096154,0.055288462,0.054086538,0.025240385,0.012019231,0.060096154,0.141826923,0.099759615,0.061298077,0.078125,0.171875,Kenya\r\n-IL3019,0.105315948,0.099297894,0.074222668,0.011033099,0.054162487,0.056168506,0.076228686,0.016048144,0.013039117,0.029087262,0.138415246,0.058174524,0.063189569,0.034102307,0.171514544,Kenya\r\n-IL3021,0.11167002,0.10362173,0.078470825,0.011066398,0.054325956,0.056338028,0.073440644,0.016096579,0.011066398,0.028169014,0.126760563,0.058350101,0.062374245,0.03722334,0.171026157,Kenya\r\n-IL3022,0.116596639,0.101890756,0.080882353,0.010504202,0.058823529,0.06092437,0.068277311,0.007352941,0.013655462,0.029411765,0.12394958,0.05987395,0.06197479,0.036764706,0.169117647,Kenya\r\n-IL3035,0.12183908,0.113409962,0.081226054,0.018390805,0.066666667,0.06743295,0.042145594,0.008429119,0.021455939,0.031417625,0.152490421,0.042145594,0.07816092,0.022222222,0.13256705,Kenya\r\n-IL3180,0.110629067,0.09978308,0.075921909,0.013015184,0.053145336,0.055314534,0.070498915,0.013015184,0.013015184,0.018438178,0.134490239,0.05856833,0.060737527,0.035791757,0.187635575,Kenya\r\n-IL3349,0.101861993,0.100766703,0.070098576,0.007667032,0.059145674,0.061336254,0.073384447,0.008762322,0.009857612,0.036144578,0.133625411,0.053669222,0.069003286,0.038335159,0.176341731,Kenya\r\n-IL374,0.135494597,0.119700748,0.087281796,0.013300083,0.074812968,0.078969244,0.044887781,0.006650042,0.015793849,0.024937656,0.128844555,0.036575229,0.057356608,0.023275145,0.152119701,Kenya\r\n-IL3775,0.07605985,0.074812968,0.069825436,0.012468828,0.058603491,0.063591022,0.089775561,0.004987531,0.016209476,0.036159601,0.137157107,0.067331671,0.064837905,0.038653367,0.189526185,Kenya\r\n-IL3779,0.089655172,0.062068966,0.034482759,0.034482759,0.051724138,0.05862069,0.106896552,0.017241379,0.013793103,0.048275862,0.134482759,0.068965517,0.055172414,0.04137931,0.182758621,Kenya\r\n-IL3932,0.064606742,0.06741573,0.073033708,0.014044944,0.095505618,0.075842697,0.081460674,0.014044944,0.02247191,0.019662921,0.123595506,0.073033708,0.039325843,0.033707865,0.202247191,Kenya\r\n-IL3949,0.12804878,0.130081301,0.099593496,0.017276423,0.039634146,0.043699187,0.050813008,0.012195122,0.011178862,0.037601626,0.150406504,0.041666667,0.073170732,0.028455285,0.136178862,Kenya\r\n-IL396,0.129508197,0.112295082,0.089344262,0.012295082,0.081147541,0.079508197,0.048360656,0.004098361,0.013114754,0.022131148,0.119672131,0.040163934,0.058196721,0.022131148,0.168032787,Kenya\r\n-IL3978,0.068055556,0.05,0.038'..b'059060403,0.056375839,0.026845638,0.010738255,0.020134228,0.037583893,0.190604027,0.053691275,0.069798658,0.028187919,0.080536913,Zambia\rMPHITA 4028 C1,0.12173913,0.130434783,0.092173913,0.012173913,0.04,0.046956522,0.026086957,0.006956522,0.012173913,0.027826087,0.166956522,0.050434783,0.074782609,0.029565217,0.16173913,Zambia\rMSORO M19 C1,0.130580357,0.146205357,0.103794643,0.013392857,0.041294643,0.042410714,0.056919643,0.015625,0.018973214,0.017857143,0.131696429,0.0390625,0.060267857,0.033482143,0.1484375,Zambia\rMSOSORO M7 C1,0.117091596,0.118035883,0.090651558,0.023607177,0.039660057,0.044381492,0.065155807,0.007554297,0.017941454,0.033994334,0.153918791,0.043437205,0.079320113,0.031161473,0.134088763,Zambia\rTRT1,0.136406397,0.127939793,0.096895579,0.013170273,0.068673565,0.075258702,0.021636877,0.008466604,0.016933208,0.030103481,0.139228598,0.043273754,0.0724365,0.022577611,0.126999059,Zambia\rTRT12,0.158751696,0.160108548,0.101763908,0.018995929,0.016282225,0.021709634,0.024423338,0.008141113,0.020352782,0.023066486,0.162822252,0.036635007,0.090909091,0.03256445,0.123473541,Zambia\rTRT15,0.145992366,0.131679389,0.10019084,0.013358779,0.063931298,0.06870229,0.020038168,0.008587786,0.017175573,0.033396947,0.140267176,0.041984733,0.078244275,0.022900763,0.113549618,Zambia\rTRT17C1,0.118181818,0.100909091,0.079090909,0.02,0.072727273,0.082727273,0.034545455,0.01,0.018181818,0.024545455,0.181818182,0.05,0.078181818,0.025454545,0.103636364,Zambia\rTRT21,0.177272727,0.152272727,0.109090909,0.029545455,0.040909091,0.047727273,0.045454545,0.020454545,0.013636364,0.025,0.125,0.040909091,0.056818182,0.011363636,0.104545455,Zambia\rTRT25,0.153846154,0.142389525,0.093289689,0.034369885,0.034369885,0.031096563,0.036006547,0.024549918,0.016366612,0.037643208,0.166939444,0.049099836,0.065466448,0.026186579,0.088379705,Zambia\rTRT37,0.136701337,0.138187221,0.111441308,0.013372957,0.059435364,0.059435364,0.016344725,0.010401189,0.020802377,0.019316493,0.151560178,0.043090639,0.08320951,0.017830609,0.118870728,Zambia\rTRT38,0.128583129,0.108927109,0.09009009,0.012285012,0.058968059,0.063882064,0.058149058,0.006552007,0.016380016,0.026208026,0.162162162,0.053235053,0.074529075,0.022932023,0.117117117,Zambia\rTRT42,0.089041096,0.095890411,0.089041096,0.022260274,0.068493151,0.061643836,0.058219178,0.008561644,0.008561644,0.02739726,0.131849315,0.066780822,0.070205479,0.015410959,0.186643836,Zambia\rTRT44,0.157681941,0.144204852,0.106469003,0.010781671,0.032345013,0.035040431,0.022911051,0.008086253,0.016172507,0.030997305,0.148247978,0.04851752,0.082210243,0.014824798,0.141509434,Zambia\rTRT46,0.133779264,0.132664437,0.105908584,0.013377926,0.046822742,0.053511706,0.045707915,0.00780379,0.015607581,0.022296544,0.151616499,0.04793757,0.086956522,0.028985507,0.107023411,Zambia\rTRT54,0.141007194,0.142446043,0.110791367,0.018705036,0.024460432,0.031654676,0.017266187,0.008633094,0.020143885,0.023021583,0.168345324,0.041726619,0.089208633,0.041726619,0.120863309,Zambia\rTRT573R,0.135185185,0.155555556,0.111111111,0.011111111,0.022222222,0.02037037,0.012962963,0.011111111,0.016666667,0.022222222,0.161111111,0.042592593,0.096296296,0.033333333,0.148148148,Zambia\rTRT59,0.117391304,0.156521739,0.104347826,0.013043478,0.004347826,0.013043478,0.02173913,0.013043478,0.004347826,0.008695652,0.147826087,0.047826087,0.117391304,0.013043478,0.217391304,Zambia\rTRT61,0.151855047,0.134598792,0.104400345,0.012942192,0.059534081,0.055220017,0.030198447,0.011216566,0.017256255,0.028472821,0.146678171,0.038826575,0.062122519,0.028472821,0.118205349,Zambia\rYOBO 2007 C2,0.10994152,0.123976608,0.092397661,0.01871345,0.045614035,0.045614035,0.045614035,0.007017544,0.01754386,0.031578947,0.18245614,0.057309942,0.085380117,0.031578947,0.105263158,Zambia\rYOBO 2038 C2,0.132764921,0.118148599,0.09500609,0.013398295,0.063337393,0.054811206,0.029232643,0.009744214,0.018270402,0.037758831,0.180267966,0.040194884,0.071863581,0.020706456,0.114494519,Zambia\n\\ No newline at end of file\n' |
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| diff -r 199e5afe498d -r 82770f07a036 data/geoTv.csv --- a/data/geoTv.csv Wed Jul 04 16:56:54 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,22 +0,0 @@ -Strain,Location,colour -TvY486,Nigeria,b -Tv11,Nigeria,b -Tv306,Nigeria,b -Tv319,Nigeria,b -Tv338,Nigeria,b -Tv340,Nigeria,b -Tv462,Nigeria,b -Tv465,Nigeria,b -Tv493,Nigeria,b -Tv596,Nigeria,b -Tv684,Nigeria,b -Tv1392,Nigeria,b -Tv2005,Uganda,g -Tv2323,Uganda,g -Tv2714,Uganda,g -TvILV-21,Uganda,g -Tv3171,Gambia,c -Tv3638,Ivory Coast,r -Tv3651,Ivory Coast,r -Tv3658,Ivory Coast,r -TvLins,Brazil,m |
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| diff -r 199e5afe498d -r 82770f07a036 data/ogeoTv.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data/ogeoTv.csv Tue Jul 10 09:22:53 2018 -0400 |
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| @@ -0,0 +1,22 @@ +Strain,Location,colour +TvY486,Nigeria,b +Tv11,Nigeria,b +Tv306,Nigeria,b +Tv319,Nigeria,b +Tv338,Nigeria,b +Tv340,Nigeria,b +Tv462,Nigeria,b +Tv465,Nigeria,b +Tv493,Nigeria,b +Tv596,Nigeria,b +Tv684,Nigeria,b +Tv1392,Nigeria,b +Tv2005,Uganda,g +Tv2323,Uganda,g +Tv2714,Uganda,g +TvILV-21,Uganda,g +Tv3171,Gambia,c +Tv3638,Ivory Coast,r +Tv3651,Ivory Coast,r +Tv3658,Ivory Coast,r +TvLins,Brazil,m |
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| diff -r 199e5afe498d -r 82770f07a036 data/vivax/TvDatabase.csv --- a/data/vivax/TvDatabase.csv Wed Jul 04 16:56:54 2018 -0400 +++ b/data/vivax/TvDatabase.csv Tue Jul 10 09:22:53 2018 -0400 |
| b |
| b'@@ -1,1084 +1,1084 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|
| b |
| diff -r 199e5afe498d -r 82770f07a036 data/vivax/geoTv.csv --- a/data/vivax/geoTv.csv Wed Jul 04 16:56:54 2018 -0400 +++ b/data/vivax/geoTv.csv Tue Jul 10 09:22:53 2018 -0400 |
| b |
| @@ -20,3 +20,11 @@ Tv3651,Ivory Coast,r Tv3658,Ivory Coast,r TvLins,Brazil,m +TvBrRp,Brazil,m +TvMi,Brazil,m +TvBobo09,Burkina Faso,y +TvBobo14,Burkina Faso,y +TvD39,Burkina Faso,y +TvKad,Burkina Faso,y +TvGondo,Burkina Faso,y +TvMagna,Togo,grey |