| Previous changeset 1:9d02cd7883ad (2013-07-06) Next changeset 3:91f07ff056ca (2014-04-14) |
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Commit message:
added samtools 0.1.19 as dependency |
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modified:
bismark_bowtie2_wrapper.xml bismark_bowtie_wrapper.xml bismark_wrapper.py tool_dependencies.xml |
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| diff -r 9d02cd7883ad -r 82814a8a2395 bismark_bowtie2_wrapper.xml --- a/bismark_bowtie2_wrapper.xml Sat Jul 06 10:04:23 2013 -0400 +++ b/bismark_bowtie2_wrapper.xml Wed Aug 21 05:19:54 2013 -0400 |
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| @@ -1,10 +1,10 @@ -<tool id="bismark_bowtie2" name="Bismark" version="0.7.12"> +<tool id="bismark_bowtie2" name="Bismark" version="0.7.12.1"> <!-- Wrapper compatible with Bismark version 0.7.11 --> <description>bisulfite mapper (bowtie2)</description> <!--<version_command>bismark version</version_command>--> <requirements> <requirement type="set_environment">SCRIPT_PATH</requirement> - <requirement type="package" version="0.1.18">samtools</requirement> + <requirement type="package" version="0.1.19">samtools</requirement> <requirement type="package" version="2.1.0">bowtie2</requirement> </requirements> <parallelism method="basic"></parallelism> |
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| diff -r 9d02cd7883ad -r 82814a8a2395 bismark_bowtie_wrapper.xml --- a/bismark_bowtie_wrapper.xml Sat Jul 06 10:04:23 2013 -0400 +++ b/bismark_bowtie_wrapper.xml Wed Aug 21 05:19:54 2013 -0400 |
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| @@ -1,10 +1,10 @@ -<tool id="bismark_bowtie" name="Bismark" version="0.7.12"> +<tool id="bismark_bowtie" name="Bismark" version="0.7.12.1"> <!-- Wrapper compatible with Bismark version 0.7.11 --> <description>bisulfite mapper (bowtie)</description> <!--<version_command>bismark version</version_command>--> <requirements> <requirement type="set_environment">SCRIPT_PATH</requirement> - <requirement type="package" version="0.1.18">samtools</requirement> + <requirement type="package" version="0.1.19">samtools</requirement> <requirement type="package" version="0.12.8">bowtie</requirement> </requirements> <parallelism method="basic"></parallelism> |
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| diff -r 9d02cd7883ad -r 82814a8a2395 bismark_wrapper.py --- a/bismark_wrapper.py Sat Jul 06 10:04:23 2013 -0400 +++ b/bismark_wrapper.py Wed Aug 21 05:19:54 2013 -0400 |
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| @@ -285,7 +285,6 @@ pass raise Exception, stderr - tmp_stdout.close() tmp_stderr.close() |
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| diff -r 9d02cd7883ad -r 82814a8a2395 tool_dependencies.xml --- a/tool_dependencies.xml Sat Jul 06 10:04:23 2013 -0400 +++ b/tool_dependencies.xml Wed Aug 21 05:19:54 2013 -0400 |
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| @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> - <package name="samtools" version="0.1.18"> - <repository changeset_revision="a7936f4ea405" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> + <package name="samtools" version="0.1.19"> + <repository changeset_revision="cb87eae7fc3e" name="package_samtools_0_1_19" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> <set_environment version="1.0"> <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> |