|
Commit message:
Uploaded first version |
|
added:
tool_dependencies.xml |
| b |
| diff -r 000000000000 -r 82c063a00753 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue May 10 12:32:13 2016 -0400 |
| b |
| @@ -0,0 +1,30 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="ncurses" version="5.9"> + <repository changeset_revision="a6cbb3aaecf6" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="zlib" version="1.2.8"> + <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="samtools" version="1.2"> + <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="pairedbamtobed12" version="1.0"> + <install version="1.0"> + <actions> + <!-- Original source https://github.com/Population-Transcriptomics/pairedBamToBed12 commit/8716972653757dbe828a4cff2e11337c12eaf75c --> + <action type="download_by_url">https://raw.githubusercontent.com/Christian-B/galaxy_shedtools/master/package_pairedBamToBed12/pairedBamToBed12.tar.gz</action> + <action type="shell_command">make</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="set_to" name="PAIREDBAMTODEB12_ROOT">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme /> + </package> +</tool_dependency> |