| Previous changeset 6:11962ce40855 (2015-10-07) Next changeset 8:f1e71aeaa923 (2016-03-18) |
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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 07148c518916e16602ea26473d00358fe04bc3b6-dirty |
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modified:
trim_galore.xml |
| b |
| diff -r 11962ce40855 -r 8352713cf939 trim_galore.xml --- a/trim_galore.xml Wed Oct 07 08:39:59 2015 -0400 +++ b/trim_galore.xml Mon Jan 25 04:44:33 2016 -0500 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="trim_galore" name="Trim Galore!" version="0.4.0"> +<tool id="trim_galore" name="Trim Galore!" version="0.4.1"> <!-- Wrapper compatible with Trim Galore! version 0.4 --> <description>adaptive quality and adapter trimmer</description> <macros> @@ -11,7 +11,7 @@ <option value="--small_rna">Illumina small RNA adapters</option> <option value="user">User defined adapter trimming</option> </param> - <when value="auto"/> + <when value=""/> <when value="--illumina"/> <when value="--nextera"/> <when value="--small_rna"/> @@ -269,14 +269,14 @@ <filter>singlePaired['sPaired'] == "paired"</filter> </data> - <data format="fastqsanger" name="unpaired_reads_1" from_work_dir="input_mate1_val_1.fq" + <data format="fastqsanger" name="unpaired_reads_1" from_work_dir="input_mate1_unpaired_1.fq" label="${tool.name} on ${on_string}: unpaired reads (1)"> <filter>params['settingsType'] == "custom"</filter> <filter>params['retain_unpaired']['retain_unpaired_select'] == "retain_unpaired_output"</filter> <filter>singlePaired['sPaired'] == "paired"</filter> </data> - <data format="fastqsanger" name="unpaired_reads_2" from_work_dir="input_mate2_val_2.fq" + <data format="fastqsanger" name="unpaired_reads_2" from_work_dir="input_mate2_unpaired_2.fq" label="${tool.name} on ${on_string}: unpaired reads (2)"> <filter>params['settingsType'] == "custom"</filter> <filter>params['retain_unpaired']['retain_unpaired_select'] == "retain_unpaired_output"</filter> |