| Previous changeset 2:77e8e7bc5b44 (2017-12-27) Next changeset 4:1723d63c7d95 (2017-12-29) |
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Commit message:
update |
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modified:
rmarkdown_samtools_flagstat.xml |
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| diff -r 77e8e7bc5b44 -r 8354d118baab rmarkdown_samtools_flagstat.xml --- a/rmarkdown_samtools_flagstat.xml Wed Dec 27 15:19:43 2017 -0500 +++ b/rmarkdown_samtools_flagstat.xml Wed Dec 27 23:29:32 2017 -0500 |
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| @@ -22,17 +22,18 @@ ]]></command> <inputs> <param type="boolean" name="echo" label="Display analysis code in report?" optional="False" checked="False" truevalue="TRUE" falsevalue="FALSE"/> - <param type="data" name="input_bam" label="BAM file" optional="False"/> + <param type="data" format="bam,sam" name="input_bam" label="BAM/SAM file" optional="False"/> </inputs> <outputs> <data name="report" format="html" label="tool name report" hidden="false"/> <data name="sink_message" format="txt" label="Warnings and Errors" from_work_dir="warnings_and_errors.txt" hidden="false"/> </outputs> - <help><![CDATA[<code>samtools flagstat in.sam|in.bam|in.cram</code> + <help><![CDATA[ + samtools flagstat in.sam|in.bam|in.cram Does a full pass through the input file to calculate and print statistics to stdout]]></help> <citations> - <citation><![CDATA[ + <citation type="bibtex"><![CDATA[ @article{allaire2016rmarkdown, title={rmarkdown: Dynamic Documents for R, 2016}, author={Allaire, J and Cheng, Joe and Xie, Yihui and McPherson, Jonathan and Chang, Winston and Allen, Jeff |