| Previous changeset 19:621fa3daa2a1 (2013-03-18) Next changeset 21:d62311a7bac6 (2013-05-23) |
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Commit message:
Adjustment of when tags. |
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modified:
flexbar.xml |
| b |
| diff -r 621fa3daa2a1 -r 83e3813084f2 flexbar.xml --- a/flexbar.xml Mon Mar 18 18:18:28 2013 +0100 +++ b/flexbar.xml Tue May 21 16:01:38 2013 +0200 |
| b |
| @@ -150,6 +150,8 @@ <option value="off" selected="true">Off</option> <option value="on">On</option> </param> + <when value="off"> + </when> <when value="on"> <param format="fasta,fastq,fastqsanger,fastqsolexa,fastqillumina,csfasta,fastqcssanger" name="reads2" type="data" label="Reads 2" optional="false" help="same format as first read set"/> </when> @@ -163,6 +165,8 @@ <option value="off" selected="true">Off</option> <option value="on">On</option> </param> + <when value="off"> + </when> <when value="on"> <param name="trimLeft" size="4" type="integer" value="0" label="Left" optional="false"/> <param name="trimRight" size="4" type="integer" value="0" label="Right" optional="false" help="trims specified number of bases from read ends"/> @@ -174,6 +178,8 @@ <option value="off" selected="true">Off</option> <option value="on">On</option> </param> + <when value="off"> + </when> <when value="on"> <param name="trimPhred" size="4" type="integer" value="10" label="Threshold" optional="false" help="trim right end until specified or higher quality reached"/> </when> @@ -185,6 +191,8 @@ <option value="off" selected="true">Off</option> <option value="on">On</option> </param> + <when value="off"> + </when> <when value="on"> <param format="fasta" name="barcodes" type="data" label="Barcodes" optional="false"/> <conditional name="cbReads"> @@ -214,6 +222,8 @@ <option value="no" selected="true">No</option> <option value="yes">Yes</option> </param> + <when value="no"> + </when> <when value="yes"> <param name="bTailLen" size="4" type="integer" value="10" label="Tail length" optional="false"/> </when> @@ -224,6 +234,8 @@ <option value="no" selected="true">No</option> <option value="yes">Yes</option> </param> + <when value="no"> + </when> <when value="yes"> <param name="bMinOverlap" size="4" type="integer" value="8" label="Min-overlap" optional="false"/> </when> @@ -236,6 +248,8 @@ <option value="no" selected="true">No</option> <option value="yes">Yes</option> </param> + <when value="no"> + </when> <when value="yes"> <param name="bMatch" size="3" type="integer" value="1" label="Match" optional="false"/> <param name="bMismatch" size="3" type="integer" value="-1" label="Mismatch" optional="false"/> @@ -252,6 +266,8 @@ <option value="on">On</option> </param> + <when value="off"> + </when> <when value="on"> <conditional name="ccAdapters"> <param name="select" type="select" label="Adapter source"> @@ -283,6 +299,8 @@ <option value="no" selected="true">No</option> <option value="yes">Yes</option> </param> + <when value="no"> + </when> <when value="yes"> <param name="aTailLen" size="4" type="integer" value="10" label="Tail length" optional="false"/> </when> @@ -296,6 +314,8 @@ <option value="no" selected="true">No</option> <option value="yes">Yes</option> </param> + <when value="no"> + </when> <when value="yes"> <param name="aMatch" size="3" type="integer" value="1" label="Match" optional="false"/> <param name="aMismatch" size="3" type="integer" value="-1" label="Mismatch" optional="false"/> @@ -311,6 +331,8 @@ <option value="off" selected="true">Off</option> <option value="on">On</option> </param> + <when value="off"> + </when> <when value="on"> <param name="trimLen" size="4" type="integer" value="30" label="Length" optional="false" help="trim reads to certain length from right"/> </when> @@ -324,6 +346,8 @@ <option value="off" selected="true">Off</option> <option value="show">Show</option> </param> + <when value="off"> + </when> <when value="show"> <param name="logLevel" type="select" label="Alignment logging"> <option value="" selected="true">Off</option> |