| Previous changeset 6:3f6014ca8e19 (2014-06-19) Next changeset 8:c8bdd88ddbba (2014-06-19) |
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Commit message:
Uploaded |
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modified:
tool_dependencies.xml |
| b |
| diff -r 3f6014ca8e19 -r 83fe7d36a64d tool_dependencies.xml --- a/tool_dependencies.xml Thu Jun 19 09:25:22 2014 -0400 +++ b/tool_dependencies.xml Thu Jun 19 09:30:16 2014 -0400 |
| b |
| @@ -7,13 +7,13 @@ <install version="1.0"> <actions> <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action> - <action type="shell_command">unzip pindel-master.zip -d pindel</action> - <!-- <action type="shell_command">cd pindel</action> + <!--<action type="shell_command">unzip pindel-master.zip -d pindel</action>--> + <action type="shell_command">cd pindel-master</action> <action type="shell_command">make SAMTOOLS=~/samtools</action> <action type="move_file"> <source>pindel</source> <destination>$INSTALL_DIR/</destination> - </action>--> + </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> </action> |