| Previous changeset 5:f2e01e023137 (2020-07-23) |
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Commit message:
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19" |
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modified:
ct_combine_tool_outputs.xml ct_macros.xml |
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| diff -r f2e01e023137 -r 844689a7f66e ct_combine_tool_outputs.xml --- a/ct_combine_tool_outputs.xml Thu Jul 23 11:59:15 2020 -0400 +++ b/ct_combine_tool_outputs.xml Fri Nov 27 13:37:40 2020 +0000 |
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| @@ -1,5 +1,5 @@ -<tool id="ct_combine_tool_outputs" name="Cell types - combine tools outputs" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> - <description>Combine predictions for single tool from multiple datasets</description> +<tool id="ct_combine_tool_outputs" name="Cell types - combine tools outputs" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> + <description>for single tool from multiple datasets</description> <macros> <import>ct_macros.xml</import> </macros> @@ -27,7 +27,7 @@ </outputs> <tests> <test> - <param name="input_tables" value="prod_outputs_scpred/E-MTAB-6386_scpred_final-labs.tsv,prod_outputs_scpred/OTHER-DATASET_scpred_final-labs.tsv" /> + <param name="input_tables" value="prod_outputs_scpred/E-ENAD-27_scpred.txt,prod_outputs_scpred/E-GEOD-81608_scpred.txt" /> <param name="scores" value="TRUE" /> <param name="exclusions" value="exclusions.yml" /> <output name="output_table" file="combined_results.tsv" compare="sim_size" /> |
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| diff -r f2e01e023137 -r 844689a7f66e ct_macros.xml --- a/ct_macros.xml Thu Jul 23 11:59:15 2020 -0400 +++ b/ct_macros.xml Fri Nov 27 13:37:40 2020 +0000 |
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| @@ -1,10 +1,10 @@ <macros> - <token name="@TOOL_VERSION@">1.1.0</token> + <token name="@TOOL_VERSION@">1.1.1</token> <token name="@HELP@">More information can be found at https://github.com/ebi-gene-expression-group/cell-types-analysis</token> <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.1.1">cell-types-analysis</requirement> + <requirement type="package" version="0.1.9">cell-types-analysis</requirement> <yield/> </requirements> </xml> @@ -15,6 +15,7 @@ </xml> <token name="@VERSION_HISTORY@"><![CDATA[ **Version history** +0.1.6+galaxy0: Add removing non-alphanumeric characters from labels in metadata files 0.0.5+galaxy0: Initial contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/. 0.0.5+galaxy1: Standardise input/output format into .txt. ]]></token> @@ -34,6 +35,17 @@ <option value="resnik">resnik</option> </param> </xml> + <xml name="sanitize_strings"> + <sanitizer invalid_char=""> + <valid initial="string.ascii_letters,string.digits"> + <add value="_" /> + <add value="-" /> + <add value="[" /> + <add value="]" /> + <add value=" " /> + </valid> + </sanitizer> + </xml> <xml name="citations"> <citations> <citation type="bibtex"> |