| Previous changeset 20:281f34ece271 (2015-03-30) Next changeset 22:4102c1600aa0 (2015-03-30) |
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Commit message:
OK now. |
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modified:
tool_dependencies.xml |
| b |
| diff -r 281f34ece271 -r 847db227d9ce tool_dependencies.xml --- a/tool_dependencies.xml Mon Mar 30 20:59:06 2015 -0400 +++ b/tool_dependencies.xml Mon Mar 30 21:11:03 2015 -0400 |
| b |
| @@ -11,15 +11,20 @@ git clone https://github.com/mdshw5/ncbi-vdb.git git clone https://github.com/mdshw5/ngs.git LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib + cd $INSTALL_DIR/ncbi-vdb + ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build + make -j2 + make install + cd $INSTALL_DIR/ngs/ngs-sdk + ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build + make -j2 + make install + cd $INSTALL_DIR/sra-tools + ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR + make -j2 + make install + sed -i -e "s|\$(HOME)|$INSTALL_DIR|g" -e "s|cache-enabled = \"true\"|cache-enabled = \"false\"|" $INSTALL_DIR/lib64/ncbi/default.kfg </action> - <action type="change_directory">./ncbi-vdb</action> - <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build</action> - <action type="change_directory">../ngs/ngs-sdk</action> - <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build</action> - <action type="change_directory">../../sra-tools</action> - <action type="shell_command">echo $PWD</action> - <action type="autoconf">--prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR --with-magic-prefix=/dev/null</action> - <action type="shell_command">sed -i -e "s|\$(HOME)|$INSTALL_DIR|g" -e "s|cache-enabled = \"true\"|cache-enabled = \"false\"|" $INSTALL_DIR/ncbi/default.kfg</action> <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action> </actions> </install> |