| Previous changeset 5:0cd2df8af811 (2022-04-14) Next changeset 7:42d9087b4789 (2022-05-23) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 2f4c9bfc48d63075ae18a1687e8d01ffea509084 |
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modified:
macros.xml stacks_cstacks.xml |
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| diff -r 0cd2df8af811 -r 8501601a118d macros.xml --- a/macros.xml Thu Apr 14 09:24:41 2022 +0000 +++ b/macros.xml Wed May 11 06:44:59 2022 +0000 |
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| @@ -10,7 +10,7 @@ </xml> <token name="@TOOL_VERSION@">2.55</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <token name="@PROFILE@">20.05</token> <xml name="citation"> @@ -632,4 +632,8 @@ <option value="--index_inline">@TYPE@ occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data) (--index_inline)</option> </expand> </xml> + <!-- for tests that check the output for "stacks completed" --> + <xml name="test_element_stacks_completed" token_element_name=""> + <element name="@ELEMENT_NAME@"><assert_contents><has_text text="stacks completed on" /></assert_contents></element> + </xml> </macros> |
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| diff -r 0cd2df8af811 -r 8501601a118d stacks_cstacks.xml --- a/stacks_cstacks.xml Thu Apr 14 09:24:41 2022 +0000 +++ b/stacks_cstacks.xml Wed May 11 06:44:59 2022 +0000 |
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| @@ -110,9 +110,9 @@ <param name="add_log" value="yes"/> <output name="output_log"><assert_contents><has_text text="done."/></assert_contents></output> <output_collection name="catalog" type="list"> - <element name="catalog.alleles"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> - <element name="catalog.snps"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> - <element name="catalog.tags"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> + <expand macro="test_element_stacks_completed" element_name="catalog.alleles" /> + <expand macro="test_element_stacks_completed" element_name="catalog.snps" /> + <expand macro="test_element_stacks_completed" element_name="catalog.tags" /> </output_collection> </test> <!-- test w non default options (wo gapped, because tested already in ustacks) --> @@ -139,9 +139,9 @@ <param name="add_log" value="no"/> <assert_stderr><has_text text="done."/></assert_stderr> <output_collection name="catalog" type="list"> - <element name="catalog.alleles"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> - <element name="catalog.snps"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> - <element name="catalog.tags"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> + <expand macro="test_element_stacks_completed" element_name="catalog.alleles" /> + <expand macro="test_element_stacks_completed" element_name="catalog.snps" /> + <expand macro="test_element_stacks_completed" element_name="catalog.tags" /> </output_collection> </test> </tests> |