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modified:
bin/piPipe.pl |
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| diff -r a03408665904 -r 851c8bbb3214 bin/piPipe.pl --- a/bin/piPipe.pl Fri Dec 01 08:14:22 2017 -0500 +++ b/bin/piPipe.pl Fri Dec 01 08:48:57 2017 -0500 |
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| @@ -119,8 +119,8 @@ my $fastq_resized = $dir_fq.$name.'_'.$min.'-'.$max.'.fastq'; size_distribution ( $fastq[$child], $fastq_resized, $size_dir, $min, $max ); - my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_'.$ref_name.'.sam'; - my $sam_genome_unique = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_'.$ref_name.'_unique.sam'; + my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.max.'sam'; + my $sam_genome_unique = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_unique.sam'; my $fastq_prefix = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max; BWA_call ( $ref, $fastq_resized, $sam_genome, $mis, $proc_child, $report ); |