| Next changeset 1:383bb5ad32e2 (2021-02-13) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238" |
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added:
macros.xml test-data/aligned_cluster_01.fasta test-data/aligned_cluster_02.fasta test-data/aligned_cluster_03.fasta test-data/aligned_cluster_04.fasta test-data/aligned_cluster_05.fasta test-data/aligned_cluster_06.fasta test-data/assembly_00.fasta.gz test-data/assembly_01.fasta.gz test-data/assembly_02.fasta.gz test-data/assembly_03.fasta.gz test-data/cluster_01.fasta test-data/cluster_02.fasta test-data/cluster_03.fasta test-data/cluster_04.fasta test-data/consensus_sequence_01.fasta test-data/consensus_sequence_02.fasta test-data/consensus_sequence_03.fasta test-data/consensus_sequence_04.fasta test-data/contigs.newick test-data/contigs.phylip test-data/contigs_01.newick test-data/contigs_01.phylip test-data/contigs_02.newick test-data/contigs_02.phylip test-data/contigs_03.newick test-data/contigs_03.phylip test-data/contigs_04.newick test-data/contigs_04.phylip test-data/partition_01.fastq test-data/partition_02.fastq test-data/partition_03.fastq test-data/partition_04.fastq test-data/reads.fastq.gz test-data/reconciled_cluster_01.fasta test-data/reconciled_cluster_02.fasta test-data/reconciled_cluster_03.fasta test-data/reconciled_cluster_04.fasta test-data/reconciled_cluster_05.fasta test-data/reconciled_cluster_06.fasta test-data/sample_01_01.fastq test-data/sample_01_02.fastq test-data/sample_01_03.fastq test-data/sample_01_04.fastq test-data/sample_02_01.fastq test-data/sample_02_02.fastq test-data/sample_02_03.fastq test-data/sample_02_04.fastq test-data/sample_03_01.fastq test-data/sample_03_02.fastq test-data/sample_03_03.fastq test-data/sample_03_04.fastq test-data/sample_04_01.fastq test-data/sample_04_02.fastq test-data/sample_04_03.fastq test-data/sample_04_04.fastq test-data/sample_05_02.fastq test-data/sample_05_03.fastq test-data/sample_05_04.fastq test-data/sample_06_02.fastq test-data/sample_06_04.fastq test-data/sample_07_04.fastq test-data/sample_08_04.fastq test-data/sample_09_04.fastq test-data/sample_10_04.fastq test-data/sample_11_04.fastq test-data/sample_12_04.fastq trycycler.py trycycler_subsample.xml |
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| diff -r 000000000000 -r 85658cabbbed macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu Feb 11 19:25:20 2021 +0000 |
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| @@ -0,0 +1,46 @@ +<macros> + <token name="@TOOL_VERSION@">0.4.2</token> + <token name="@PIPELINE@"> +**Trycycler pipeline** + + :: + + Trycycler subsample: make maximally-independent read subsets of an appropriate depth. + ⬇ + Trycycler cluster: carries out complete-linkage clustering of all contig sequences. + ⬇ + Trycycler reconcile/msa: reconcile the contigs within each cluster and perform a multiple sequence alignment. + ⬇ + Trycycler partition: split the reads between the different clusters. + ⬇ + Trycycler consensus: generate a consensus contig sequence for each cluster. + + </token> + <xml name="edam_ontology"> + <edam_topics> + <edam_topic>topic_0196</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0525</edam_operation> + </edam_operations> + </xml> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">trycycler</requirement> + </requirements> + </xml> + <xml name="citations"> + <citations> + <citation type="bibtex"> + @misc{githubTrycycler, + author = {Ryan, Wick}, + year = {2020}, + title = {Trycycler}, + publisher = {GitHub}, + journal = {GitHub repository}, + url = {https://github.com/rrwick/Trycycler}, + } + </citation> + </citations> + </xml> +</macros> |
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| diff -r 000000000000 -r 85658cabbbed test-data/aligned_cluster_01.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/aligned_cluster_01.fasta Thu Feb 11 19:25:20 2021 +0000 |
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| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTT--TGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTC-TTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTC-AAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGA-TTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTG-AAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATC-TTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACAC-TTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAA'..b'ATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTC-TTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' 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| diff -r 000000000000 -r 85658cabbbed test-data/aligned_cluster_02.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/aligned_cluster_02.fasta Thu Feb 11 19:25:20 2021 +0000 |
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| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTT--TGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTC-TTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTC-AAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGA-TTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTG-AAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATC-TTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACAC-TTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAA'..b'ATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTC-TTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/aligned_cluster_03.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/aligned_cluster_03.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTT--TGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTC-TTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTC-AAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTT-TTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTG-AAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATC-TTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACAC-TTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAA'..b'ATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTC-TTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/aligned_cluster_04.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/aligned_cluster_04.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTT--TGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTC-TTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTC-AAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGA-TTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTG-AAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATC-TTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACAC-TTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAA'..b'ATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTC-TTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/aligned_cluster_05.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/aligned_cluster_05.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTT--TGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTC-TTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTC-AAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTT-TTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTG-AAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATC-TTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACAC-TTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAA'..b'ATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTC-TTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/aligned_cluster_06.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/aligned_cluster_06.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTT--TGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTC-TTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTC-AAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTT-TTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTG-AAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATC-TTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACAC-TTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAA'..b'ATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTC-TTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' |
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| diff -r 000000000000 -r 85658cabbbed test-data/assembly_00.fasta.gz |
| b |
| Binary file test-data/assembly_00.fasta.gz has changed |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/assembly_01.fasta.gz |
| b |
| Binary file test-data/assembly_01.fasta.gz has changed |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/assembly_02.fasta.gz |
| b |
| Binary file test-data/assembly_02.fasta.gz has changed |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/assembly_03.fasta.gz |
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| Binary file test-data/assembly_03.fasta.gz has changed |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/cluster_01.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cluster_01.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>C_contig_2\n+CTCCCCAACCAAACTCTACAAAAAGAGTTTCAATCGATCCCCTATAAATCCGCATATATTTTGGCCGCTAGAAAAGGCGATTTAAAAACCAAGGTCGATGTGATAGGGAAAGTATGTGGAATGTCGAACTCATCGGCGATAAGGGTGTTGGATCAATTTCTTCCTTCATCTAGAAACAAAGACGTTAGAGAAACGATAGATAAGTCTGATTCAGAGAAGAATCGCCAATTATCTGATTTCTTAATAGAGATACTTCGCATCATATGTTCCGGAGTTTCTTTGTCCTCCTATAACGAAAATCTTCTACAACAGCTTTTTGAACTTTTTAAGCAAAAGAGCTGATCCTCCGTCAGCTCATATATATATTTATTATATATATATTTATTTAGGGATTTGATTTTACGAGAGAGATTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGGGTGGTAGACTTGGTCATAATGGACTTTTGTTAAAAAATTTCTTAAAATCTTAGAGCTCCGATTTTGAATAGCTTTGGTTAAGAAAATGGGCTCGATGGCTTTCCATAAAAGTAGATTGTTCTTAACTTTTGGGGACGCGTCGGAAATTTGGTTATCTACTTTATCTCATCTAACTAGAAAAAATTATGCGTCTGGGATTAACTTTCTTGTTTCTTTAGAGATTCTGGATTTATCGGAAACCTTGATAAAGGCTATTTCTCTTGACCACAGCGAATCTTTGTTTAAAATCAAGTCTCTAGATGTTTTTAATGGAAAAGTCGTTTCAGAGGCCTCTAAACAGGCTAGAGCGGCATGCTACATATCTTTCACAAAGTTTTTGTATAGATTGACCAAGGGATATATTAAACCCGCTATTCCATTGAAAGATTTTGGAAACACTACATTTTTTAAAATCCGAGACAAAATCAAAACAGAATCGATTTCTAAGCAGGAATGGACAGTTTTTTTTGAAGCGCTCCGGATAGTGAATTATAGAGACTATTTAATCGGTAAATTGATTGTACAAGGGATCCGTAAGTTAGACGAAATTTTGTCTTTGCGCACAGACGATCTATTTTTTGCATCCAATCAGATTTCCTTTCGCATTAAAAAAAGACAGAATAAAGAAACCAAAATTCTAATCACATTTCCTATCAGCTTAATGGAAGAGTTGCAAAAATACACTTGTGGGAGAAATGGGAGAGTATTTGTTTCTAAAATAGGGATTCCTGTAACAACAAGTCAGGTTGCGCATAATTTTAGGCTTGCAGAGTTCCATAGTGCTATGAAAATAAAAATTACTCCCAGAGTACTTCGTGCAAGCGCTTTGATTCATTTAAAGCAAATAGGATTAAAAGATGAGGAAATCATGCGTATTTCCTGTCTCTCATCGAGACAAAGTGTGTGTTCTTATTGTTCTGGGGAAGAGGTAAGTCCTCTAGTACAAACACCCACAATATTGTGATATAATTAAAATTATATTCATATTCTGTTGCCAGAAAAAACACCTTTAGGCTATATTAGAGCCATCTTCTTTGAAGCATTGTCTTCTCGAGAGGATTTATCGTACGCAAATATCATCTTTGCGGTTGCGTGTCCCGTGACCTTCATTATGTCGGAGTCTGAGCACCCTAGGCGTTTGTACTCCGTCACAGCGGTTGCTCGAAGCACGTGCGGGGTTATCTTAAAAGGGATTGCAGCTTGTAGTCCTGCTTGAGAGAACGTGCGGGCGATTTGCCTTAACCCCACCATTTTTCCGGAGCGAGTTACGAAGACAGAAAACCTCTTCGTTGACCGATGTACTCTTGTAGAAAGTGCATAAACTTCTGAGGATAAGTTATAATAATCCTCTTTTCTGTCTGACGGTTCTTAAGCTGGGAGAAAGAAATGGTAGCTTGTTGGAAACAAATCTGACTAATCTCCAAGCTTAAGACTTCAGAGGAGCGTTTACCTCCTTGGAGCATTGTCTGGGCGATCAACCAATCCCGGGCGTTGATTTTTTTTAGCTCTTTTAGGAAGGATGCTGTTTGCAAACTGTTCATCGCATCCGTTTTTACTATTTCCCTGGTTTTAAAAAATGTTCGACTATTTTCTTGTTTAGAAGGTTGCGCTATAGCGACTATTCCTTGAGTCATCCTGTTTAGGAATCTTGTTAAGGAAATATAGCTTGCTGCTCGAACTTGTTTAGTACCTTCGGTCCAAGAAGTCTTGGCAGAGGAAACTTTTTTAATCGCATCTAGGATTAGATTATGATTTAAAAGGGAAAACTCTTGCAGATTCATATCCAAAGACAATAGACCAATCTTTTCTAAAGACAAAAAAGATCCTCGATATGATCTACAAGTATGTTTGTTGAGTGATGCGGTCCAATGCATAATAACTTCGAATAAGGAGAAGCTTTTCATGCGTTTCCAATAGGATTCTTGGCGAATTTTTAAAACTTCCTGATAAGACTTTTCGCTATATTCTAACGACATTTCTTGCTGCAAAGATAAAATCCCTTTACCCATGAAATCCCTCGTGATATAACCTATCCGCAAAATGTCCTGATTAGTGAAATAATCAGGTTGTTAACAGGATAGCACGCTCGGTATTTTTTTATATAAACATGAAAACTCGTTCCGAAATAGAAAATCGCATGCAAGATATCGAGTATGCGTTGTTAGGTAAAGCTCTGATATTTGAAGACTCTACTGAGTATATTCTGAGGCAGCTTGCTAATTATGAGTTTAAGTGTTCCCATCATAAAAACATATTCATAGTATTTAAATACTTAAAAGACAATGGATTACCTATAACTGTAGACTCGGCTTGGGAAGAGCTTTTGCGGCGTCGTATCAAAGATATGGACAAATCGTATCTCGGGTTAATGTTGCATGATGCTTTATCAAATGACAAGCTTAGATCCGTTTCTCATACGGTTTTCCTCGATGATTTGAGCGTGTGTAGCGCTGAAGAAAATTTGAGCAATTTCATTTTCCGCTCGTTTAATGAGTACAATGAAAATCCATTGCGTAGATCTCCGTTTCTATTGCTTGAGCGTATAAAGGGAAGGCTTGATAGTGCTATAGCAAAGACTTTTTCTATTCGCAGCGCTAGAGGCCGGTCTATTTATGATATATTCTCACAGTCAGAAATTGGAGTGCTGGCTCGTATAAAAAAAAGACGAGCAGCGTTCTCTGAGAATCAAAATTCTTTCTTTGATGGCTTCCCAACAGGATACAAGGATATTGATGATAAAGGAGTTATCTTAGCTAAAGGTAATTTCGTGATTATAGCAGCTAGGCCATCTATAGGGAAAACAGCTTTAGCTATAGACATGGCGATAAATCTTGCGGTTACTCAACAGCGTAGAGTTGGTTTCCTATCTCTAGAAATGAGCGCAGGTCAAATTGTTGAGCGGATTATTGCTAATTTAACAGGAATATCTGGTGAAAAATTACAAAGAGGGGATCTCTCTAAAGAAGAATTATTCCGAGTAGAAGAAGCTGGAGAAACAGTTAGAGAATCACATTTTTATATCTGCAGTGATAGTCAGTATAAGCTTAATTTAATCGCGAATCAGATCCAGTTGCTGAGAAAAGAAGATCGAGTAGACGTAATATTTATCGATTACTTGCAGTTGATCAACTCATCGGTTGGAGAAAATCGTCAAAATGAAATAGCAGATATATCTAGAACCTTAAGAGGTTTAGCCTCAGAGCTAAACATTCCTATAGTTTGTTTATCCCAACTATCTAGAAAAGTTGAGGATAGAGCAAATAAAGTTCCCATGCTTTCAGATTTGCGAGACAGCGGTCAAATAGAGCAAGACGCAGATGTGATTTTGTTTATCAATAGGAAGGAATCGTCTTCTAATTGTGAGATAACTGTTGGGAAAAATAGACATGGATCGGTTTTCTCTTCGGTATTACATTTCGATCCAAAAATTAG'..b'CTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAAGAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTG\n' |
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| diff -r 000000000000 -r 85658cabbbed test-data/cluster_02.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cluster_02.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>C_contig_2\n+CTCCCCAACCAAACTCTACAAAAAGAGTTTCAATCGATCCCCTATAAATCCGCATATATTTTGGCCGCTAGAAAAGGCGATTTAAAAACCAAGGTCGATGTGATAGGGAAAGTATGTGGAATGTCGAACTCATCGGCGATAAGGGTGTTGGATCAATTTCTTCCTTCATCTAGAAACAAAGACGTTAGAGAAACGATAGATAAGTCTGATTCAGAGAAGAATCGCCAATTATCTGATTTCTTAATAGAGATACTTCGCATCATATGTTCCGGAGTTTCTTTGTCCTCCTATAACGAAAATCTTCTACAACAGCTTTTTGAACTTTTTAAGCAAAAGAGCTGATCCTCCGTCAGCTCATATATATATTTATTATATATATATTTATTTAGGGATTTGATTTTACGAGAGAGATTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGGGTGGTAGACTTGGTCATAATGGACTTTTGTTAAAAAATTTCTTAAAATCTTAGAGCTCCGATTTTGAATAGCTTTGGTTAAGAAAATGGGCTCGATGGCTTTCCATAAAAGTAGATTGTTCTTAACTTTTGGGGACGCGTCGGAAATTTGGTTATCTACTTTATCTCATCTAACTAGAAAAAATTATGCGTCTGGGATTAACTTTCTTGTTTCTTTAGAGATTCTGGATTTATCGGAAACCTTGATAAAGGCTATTTCTCTTGACCACAGCGAATCTTTGTTTAAAATCAAGTCTCTAGATGTTTTTAATGGAAAAGTCGTTTCAGAGGCCTCTAAACAGGCTAGAGCGGCATGCTACATATCTTTCACAAAGTTTTTGTATAGATTGACCAAGGGATATATTAAACCCGCTATTCCATTGAAAGATTTTGGAAACACTACATTTTTTAAAATCCGAGACAAAATCAAAACAGAATCGATTTCTAAGCAGGAATGGACAGTTTTTTTTGAAGCGCTCCGGATAGTGAATTATAGAGACTATTTAATCGGTAAATTGATTGTACAAGGGATCCGTAAGTTAGACGAAATTTTGTCTTTGCGCACAGACGATCTATTTTTTGCATCCAATCAGATTTCCTTTCGCATTAAAAAAAGACAGAATAAAGAAACCAAAATTCTAATCACATTTCCTATCAGCTTAATGGAAGAGTTGCAAAAATACACTTGTGGGAGAAATGGGAGAGTATTTGTTTCTAAAATAGGGATTCCTGTAACAACAAGTCAGGTTGCGCATAATTTTAGGCTTGCAGAGTTCCATAGTGCTATGAAAATAAAAATTACTCCCAGAGTACTTCGTGCAAGCGCTTTGATTCATTTAAAGCAAATAGGATTAAAAGATGAGGAAATCATGCGTATTTCCTGTCTCTCATCGAGACAAAGTGTGTGTTCTTATTGTTCTGGGGAAGAGGTAAGTCCTCTAGTACAAACACCCACAATATTGTGATATAATTAAAATTATATTCATATTCTGTTGCCAGAAAAAACACCTTTAGGCTATATTAGAGCCATCTTCTTTGAAGCATTGTCTTCTCGAGAGGATTTATCGTACGCAAATATCATCTTTGCGGTTGCGTGTCCCGTGACCTTCATTATGTCGGAGTCTGAGCACCCTAGGCGTTTGTACTCCGTCACAGCGGTTGCTCGAAGCACGTGCGGGGTTATCTTAAAAGGGATTGCAGCTTGTAGTCCTGCTTGAGAGAACGTGCGGGCGATTTGCCTTAACCCCACCATTTTTCCGGAGCGAGTTACGAAGACAGAAAACCTCTTCGTTGACCGATGTACTCTTGTAGAAAGTGCATAAACTTCTGAGGATAAGTTATAATAATCCTCTTTTCTGTCTGACGGTTCTTAAGCTGGGAGAAAGAAATGGTAGCTTGTTGGAAACAAATCTGACTAATCTCCAAGCTTAAGACTTCAGAGGAGCGTTTACCTCCTTGGAGCATTGTCTGGGCGATCAACCAATCCCGGGCGTTGATTTTTTTTAGCTCTTTTAGGAAGGATGCTGTTTGCAAACTGTTCATCGCATCCGTTTTTACTATTTCCCTGGTTTTAAAAAATGTTCGACTATTTTCTTGTTTAGAAGGTTGCGCTATAGCGACTATTCCTTGAGTCATCCTGTTTAGGAATCTTGTTAAGGAAATATAGCTTGCTGCTCGAACTTGTTTAGTACCTTCGGTCCAAGAAGTCTTGGCAGAGGAAACTTTTTTAATCGCATCTAGGATTAGATTATGATTTAAAAGGGAAAACTCTTGCAGATTCATATCCAAAGACAATAGACCAATCTTTTCTAAAGACAAAAAAGATCCTCGATATGATCTACAAGTATGTTTGTTGAGTGATGCGGTCCAATGCATAATAACTTCGAATAAGGAGAAGCTTTTCATGCGTTTCCAATAGGATTCTTGGCGAATTTTTAAAACTTCCTGATAAGACTTTTCGCTATATTCTAACGACATTTCTTGCTGCAAAGATAAAATCCCTTTACCCATGAAATCCCTCGTGATATAACCTATCCGCAAAATGTCCTGATTAGTGAAATAATCAGGTTGTTAACAGGATAGCACGCTCGGTATTTTTTTATATAAACATGAAAACTCGTTCCGAAATAGAAAATCGCATGCAAGATATCGAGTATGCGTTGTTAGGTAAAGCTCTGATATTTGAAGACTCTACTGAGTATATTCTGAGGCAGCTTGCTAATTATGAGTTTAAGTGTTCCCATCATAAAAACATATTCATAGTATTTAAATACTTAAAAGACAATGGATTACCTATAACTGTAGACTCGGCTTGGGAAGAGCTTTTGCGGCGTCGTATCAAAGATATGGACAAATCGTATCTCGGGTTAATGTTGCATGATGCTTTATCAAATGACAAGCTTAGATCCGTTTCTCATACGGTTTTCCTCGATGATTTGAGCGTGTGTAGCGCTGAAGAAAATTTGAGCAATTTCATTTTCCGCTCGTTTAATGAGTACAATGAAAATCCATTGCGTAGATCTCCGTTTCTATTGCTTGAGCGTATAAAGGGAAGGCTTGATAGTGCTATAGCAAAGACTTTTTCTATTCGCAGCGCTAGAGGCCGGTCTATTTATGATATATTCTCACAGTCAGAAATTGGAGTGCTGGCTCGTATAAAAAAAAGACGAGCAGCGTTCTCTGAGAATCAAAATTCTTTCTTTGATGGCTTCCCAACAGGATACAAGGATATTGATGATAAAGGAGTTATCTTAGCTAAAGGTAATTTCGTGATTATAGCAGCTAGGCCATCTATAGGGAAAACAGCTTTAGCTATAGACATGGCGATAAATCTTGCGGTTACTCAACAGCGTAGAGTTGGTTTCCTATCTCTAGAAATGAGCGCAGGTCAAATTGTTGAGCGGATTATTGCTAATTTAACAGGAATATCTGGTGAAAAATTACAAAGAGGGGATCTCTCTAAAGAAGAATTATTCCGAGTAGAAGAAGCTGGAGAAACAGTTAGAGAATCACATTTTTATATCTGCAGTGATAGTCAGTATAAGCTTAATTTAATCGCGAATCAGATCCAGTTGCTGAGAAAAGAAGATCGAGTAGACGTAATATTTATCGATTACTTGCAGTTGATCAACTCATCGGTTGGAGAAAATCGTCAAAATGAAATAGCAGATATATCTAGAACCTTAAGAGGTTTAGCCTCAGAGCTAAACATTCCTATAGTTTGTTTATCCCAACTATCTAGAAAAGTTGAGGATAGAGCAAATAAAGTTCCCATGCTTTCAGATTTGCGAGACAGCGGTCAAATAGAGCAAGACGCAGATGTGATTTTGTTTATCAATAGGAAGGAATCGTCTTCTAATTGTGAGATAACTGTTGGGAAAAATAGACATGGATCGGTTTTCTCTTCGGTATTACATTTCGATCCAAAAATTAG'..b'CTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAAGAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTG\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/cluster_03.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cluster_03.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>C_contig_2\n+CTCCCCAACCAAACTCTACAAAAAGAGTTTCAATCGATCCCCTATAAATCCGCATATATTTTGGCCGCTAGAAAAGGCGATTTAAAAACCAAGGTCGATGTGATAGGGAAAGTATGTGGAATGTCGAACTCATCGGCGATAAGGGTGTTGGATCAATTTCTTCCTTCATCTAGAAACAAAGACGTTAGAGAAACGATAGATAAGTCTGATTCAGAGAAGAATCGCCAATTATCTGATTTCTTAATAGAGATACTTCGCATCATATGTTCCGGAGTTTCTTTGTCCTCCTATAACGAAAATCTTCTACAACAGCTTTTTGAACTTTTTAAGCAAAAGAGCTGATCCTCCGTCAGCTCATATATATATTTATTATATATATATTTATTTAGGGATTTGATTTTACGAGAGAGATTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGGGTGGTAGACTTGGTCATAATGGACTTTTGTTAAAAAATTTCTTAAAATCTTAGAGCTCCGATTTTGAATAGCTTTGGTTAAGAAAATGGGCTCGATGGCTTTCCATAAAAGTAGATTGTTCTTAACTTTTGGGGACGCGTCGGAAATTTGGTTATCTACTTTATCTCATCTAACTAGAAAAAATTATGCGTCTGGGATTAACTTTCTTGTTTCTTTAGAGATTCTGGATTTATCGGAAACCTTGATAAAGGCTATTTCTCTTGACCACAGCGAATCTTTGTTTAAAATCAAGTCTCTAGATGTTTTTAATGGAAAAGTCGTTTCAGAGGCCTCTAAACAGGCTAGAGCGGCATGCTACATATCTTTCACAAAGTTTTTGTATAGATTGACCAAGGGATATATTAAACCCGCTATTCCATTGAAAGATTTTGGAAACACTACATTTTTTAAAATCCGAGACAAAATCAAAACAGAATCGATTTCTAAGCAGGAATGGACAGTTTTTTTTGAAGCGCTCCGGATAGTGAATTATAGAGACTATTTAATCGGTAAATTGATTGTACAAGGGATCCGTAAGTTAGACGAAATTTTGTCTTTGCGCACAGACGATCTATTTTTTGCATCCAATCAGATTTCCTTTCGCATTAAAAAAAGACAGAATAAAGAAACCAAAATTCTAATCACATTTCCTATCAGCTTAATGGAAGAGTTGCAAAAATACACTTGTGGGAGAAATGGGAGAGTATTTGTTTCTAAAATAGGGATTCCTGTAACAACAAGTCAGGTTGCGCATAATTTTAGGCTTGCAGAGTTCCATAGTGCTATGAAAATAAAAATTACTCCCAGAGTACTTCGTGCAAGCGCTTTGATTCATTTAAAGCAAATAGGATTAAAAGATGAGGAAATCATGCGTATTTCCTGTCTCTCATCGAGACAAAGTGTGTGTTCTTATTGTTCTGGGGAAGAGGTAAGTCCTCTAGTACAAACACCCACAATATTGTGATATAATTAAAATTATATTCATATTCTGTTGCCAGAAAAAACACCTTTAGGCTATATTAGAGCCATCTTCTTTGAAGCATTGTCTTCTCGAGAGGATTTATCGTACGCAAATATCATCTTTGCGGTTGCGTGTCCCGTGACCTTCATTATGTCGGAGTCTGAGCACCCTAGGCGTTTGTACTCCGTCACAGCGGTTGCTCGAAGCACGTGCGGGGTTATCTTAAAAGGGATTGCAGCTTGTAGTCCTGCTTGAGAGAACGTGCGGGCGATTTGCCTTAACCCCACCATTTTTCCGGAGCGAGTTACGAAGACAGAAAACCTCTTCGTTGACCGATGTACTCTTGTAGAAAGTGCATAAACTTCTGAGGATAAGTTATAATAATCCTCTTTTCTGTCTGACGGTTCTTAAGCTGGGAGAAAGAAATGGTAGCTTGTTGGAAACAAATCTGACTAATCTCCAAGCTTAAGACTTCAGAGGAGCGTTTACCTCCTTGGAGCATTGTCTGGGCGATCAACCAATCCCGGGCGTTGATTTTTTTTAGCTCTTTTAGGAAGGATGCTGTTTGCAAACTGTTCATCGCATCCGTTTTTACTATTTCCCTGGTTTTAAAAAATGTTCGACTATTTTCTTGTTTAGAAGGTTGCGCTATAGCGACTATTCCTTGAGTCATCCTGTTTAGGAATCTTGTTAAGGAAATATAGCTTGCTGCTCGAACTTGTTTAGTACCTTCGGTCCAAGAAGTCTTGGCAGAGGAAACTTTTTTAATCGCATCTAGGATTAGATTATGATTTAAAAGGGAAAACTCTTGCAGATTCATATCCAAAGACAATAGACCAATCTTTTCTAAAGACAAAAAAGATCCTCGATATGATCTACAAGTATGTTTGTTGAGTGATGCGGTCCAATGCATAATAACTTCGAATAAGGAGAAGCTTTTCATGCGTTTCCAATAGGATTCTTGGCGAATTTTTAAAACTTCCTGATAAGACTTTTCGCTATATTCTAACGACATTTCTTGCTGCAAAGATAAAATCCCTTTACCCATGAAATCCCTCGTGATATAACCTATCCGCAAAATGTCCTGATTAGTGAAATAATCAGGTTGTTAACAGGATAGCACGCTCGGTATTTTTTTATATAAACATGAAAACTCGTTCCGAAATAGAAAATCGCATGCAAGATATCGAGTATGCGTTGTTAGGTAAAGCTCTGATATTTGAAGACTCTACTGAGTATATTCTGAGGCAGCTTGCTAATTATGAGTTTAAGTGTTCCCATCATAAAAACATATTCATAGTATTTAAATACTTAAAAGACAATGGATTACCTATAACTGTAGACTCGGCTTGGGAAGAGCTTTTGCGGCGTCGTATCAAAGATATGGACAAATCGTATCTCGGGTTAATGTTGCATGATGCTTTATCAAATGACAAGCTTAGATCCGTTTCTCATACGGTTTTCCTCGATGATTTGAGCGTGTGTAGCGCTGAAGAAAATTTGAGCAATTTCATTTTCCGCTCGTTTAATGAGTACAATGAAAATCCATTGCGTAGATCTCCGTTTCTATTGCTTGAGCGTATAAAGGGAAGGCTTGATAGTGCTATAGCAAAGACTTTTTCTATTCGCAGCGCTAGAGGCCGGTCTATTTATGATATATTCTCACAGTCAGAAATTGGAGTGCTGGCTCGTATAAAAAAAAGACGAGCAGCGTTCTCTGAGAATCAAAATTCTTTCTTTGATGGCTTCCCAACAGGATACAAGGATATTGATGATAAAGGAGTTATCTTAGCTAAAGGTAATTTCGTGATTATAGCAGCTAGGCCATCTATAGGGAAAACAGCTTTAGCTATAGACATGGCGATAAATCTTGCGGTTACTCAACAGCGTAGAGTTGGTTTCCTATCTCTAGAAATGAGCGCAGGTCAAATTGTTGAGCGGATTATTGCTAATTTAACAGGAATATCTGGTGAAAAATTACAAAGAGGGGATCTCTCTAAAGAAGAATTATTCCGAGTAGAAGAAGCTGGAGAAACAGTTAGAGAATCACATTTTTATATCTGCAGTGATAGTCAGTATAAGCTTAATTTAATCGCGAATCAGATCCAGTTGCTGAGAAAAGAAGATCGAGTAGACGTAATATTTATCGATTACTTGCAGTTGATCAACTCATCGGTTGGAGAAAATCGTCAAAATGAAATAGCAGATATATCTAGAACCTTAAGAGGTTTAGCCTCAGAGCTAAACATTCCTATAGTTTGTTTATCCCAACTATCTAGAAAAGTTGAGGATAGAGCAAATAAAGTTCCCATGCTTTCAGATTTGCGAGACAGCGGTCAAATAGAGCAAGACGCAGATGTGATTTTGTTTATCAATAGGAAGGAATCGTCTTCTAATTGTGAGATAACTGTTGGGAAAAATAGACATGGATCGGTTTTCTCTTCGGTATTACATTTCGATCCAAAAATTAG'..b'CTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAAGAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTG\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/cluster_04.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cluster_04.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>C_contig_2\n+CTCCCCAACCAAACTCTACAAAAAGAGTTTCAATCGATCCCCTATAAATCCGCATATATTTTGGCCGCTAGAAAAGGCGATTTAAAAACCAAGGTCGATGTGATAGGGAAAGTATGTGGAATGTCGAACTCATCGGCGATAAGGGTGTTGGATCAATTTCTTCCTTCATCTAGAAACAAAGACGTTAGAGAAACGATAGATAAGTCTGATTCAGAGAAGAATCGCCAATTATCTGATTTCTTAATAGAGATACTTCGCATCATATGTTCCGGAGTTTCTTTGTCCTCCTATAACGAAAATCTTCTACAACAGCTTTTTGAACTTTTTAAGCAAAAGAGCTGATCCTCCGTCAGCTCATATATATATTTATTATATATATATTTATTTAGGGATTTGATTTTACGAGAGAGATTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGACTTTGCAACTCTTGGTGGTAGGGTGGTAGACTTGGTCATAATGGACTTTTGTTAAAAAATTTCTTAAAATCTTAGAGCTCCGATTTTGAATAGCTTTGGTTAAGAAAATGGGCTCGATGGCTTTCCATAAAAGTAGATTGTTCTTAACTTTTGGGGACGCGTCGGAAATTTGGTTATCTACTTTATCTCATCTAACTAGAAAAAATTATGCGTCTGGGATTAACTTTCTTGTTTCTTTAGAGATTCTGGATTTATCGGAAACCTTGATAAAGGCTATTTCTCTTGACCACAGCGAATCTTTGTTTAAAATCAAGTCTCTAGATGTTTTTAATGGAAAAGTCGTTTCAGAGGCCTCTAAACAGGCTAGAGCGGCATGCTACATATCTTTCACAAAGTTTTTGTATAGATTGACCAAGGGATATATTAAACCCGCTATTCCATTGAAAGATTTTGGAAACACTACATTTTTTAAAATCCGAGACAAAATCAAAACAGAATCGATTTCTAAGCAGGAATGGACAGTTTTTTTTGAAGCGCTCCGGATAGTGAATTATAGAGACTATTTAATCGGTAAATTGATTGTACAAGGGATCCGTAAGTTAGACGAAATTTTGTCTTTGCGCACAGACGATCTATTTTTTGCATCCAATCAGATTTCCTTTCGCATTAAAAAAAGACAGAATAAAGAAACCAAAATTCTAATCACATTTCCTATCAGCTTAATGGAAGAGTTGCAAAAATACACTTGTGGGAGAAATGGGAGAGTATTTGTTTCTAAAATAGGGATTCCTGTAACAACAAGTCAGGTTGCGCATAATTTTAGGCTTGCAGAGTTCCATAGTGCTATGAAAATAAAAATTACTCCCAGAGTACTTCGTGCAAGCGCTTTGATTCATTTAAAGCAAATAGGATTAAAAGATGAGGAAATCATGCGTATTTCCTGTCTCTCATCGAGACAAAGTGTGTGTTCTTATTGTTCTGGGGAAGAGGTAAGTCCTCTAGTACAAACACCCACAATATTGTGATATAATTAAAATTATATTCATATTCTGTTGCCAGAAAAAACACCTTTAGGCTATATTAGAGCCATCTTCTTTGAAGCATTGTCTTCTCGAGAGGATTTATCGTACGCAAATATCATCTTTGCGGTTGCGTGTCCCGTGACCTTCATTATGTCGGAGTCTGAGCACCCTAGGCGTTTGTACTCCGTCACAGCGGTTGCTCGAAGCACGTGCGGGGTTATCTTAAAAGGGATTGCAGCTTGTAGTCCTGCTTGAGAGAACGTGCGGGCGATTTGCCTTAACCCCACCATTTTTCCGGAGCGAGTTACGAAGACAGAAAACCTCTTCGTTGACCGATGTACTCTTGTAGAAAGTGCATAAACTTCTGAGGATAAGTTATAATAATCCTCTTTTCTGTCTGACGGTTCTTAAGCTGGGAGAAAGAAATGGTAGCTTGTTGGAAACAAATCTGACTAATCTCCAAGCTTAAGACTTCAGAGGAGCGTTTACCTCCTTGGAGCATTGTCTGGGCGATCAACCAATCCCGGGCGTTGATTTTTTTTAGCTCTTTTAGGAAGGATGCTGTTTGCAAACTGTTCATCGCATCCGTTTTTACTATTTCCCTGGTTTTAAAAAATGTTCGACTATTTTCTTGTTTAGAAGGTTGCGCTATAGCGACTATTCCTTGAGTCATCCTGTTTAGGAATCTTGTTAAGGAAATATAGCTTGCTGCTCGAACTTGTTTAGTACCTTCGGTCCAAGAAGTCTTGGCAGAGGAAACTTTTTTAATCGCATCTAGGATTAGATTATGATTTAAAAGGGAAAACTCTTGCAGATTCATATCCAAAGACAATAGACCAATCTTTTCTAAAGACAAAAAAGATCCTCGATATGATCTACAAGTATGTTTGTTGAGTGATGCGGTCCAATGCATAATAACTTCGAATAAGGAGAAGCTTTTCATGCGTTTCCAATAGGATTCTTGGCGAATTTTTAAAACTTCCTGATAAGACTTTTCGCTATATTCTAACGACATTTCTTGCTGCAAAGATAAAATCCCTTTACCCATGAAATCCCTCGTGATATAACCTATCCGCAAAATGTCCTGATTAGTGAAATAATCAGGTTGTTAACAGGATAGCACGCTCGGTATTTTTTTATATAAACATGAAAACTCGTTCCGAAATAGAAAATCGCATGCAAGATATCGAGTATGCGTTGTTAGGTAAAGCTCTGATATTTGAAGACTCTACTGAGTATATTCTGAGGCAGCTTGCTAATTATGAGTTTAAGTGTTCCCATCATAAAAACATATTCATAGTATTTAAATACTTAAAAGACAATGGATTACCTATAACTGTAGACTCGGCTTGGGAAGAGCTTTTGCGGCGTCGTATCAAAGATATGGACAAATCGTATCTCGGGTTAATGTTGCATGATGCTTTATCAAATGACAAGCTTAGATCCGTTTCTCATACGGTTTTCCTCGATGATTTGAGCGTGTGTAGCGCTGAAGAAAATTTGAGCAATTTCATTTTCCGCTCGTTTAATGAGTACAATGAAAATCCATTGCGTAGATCTCCGTTTCTATTGCTTGAGCGTATAAAGGGAAGGCTTGATAGTGCTATAGCAAAGACTTTTTCTATTCGCAGCGCTAGAGGCCGGTCTATTTATGATATATTCTCACAGTCAGAAATTGGAGTGCTGGCTCGTATAAAAAAAAGACGAGCAGCGTTCTCTGAGAATCAAAATTCTTTCTTTGATGGCTTCCCAACAGGATACAAGGATATTGATGATAAAGGAGTTATCTTAGCTAAAGGTAATTTCGTGATTATAGCAGCTAGGCCATCTATAGGGAAAACAGCTTTAGCTATAGACATGGCGATAAATCTTGCGGTTACTCAACAGCGTAGAGTTGGTTTCCTATCTCTAGAAATGAGCGCAGGTCAAATTGTTGAGCGGATTATTGCTAATTTAACAGGAATATCTGGTGAAAAATTACAAAGAGGGGATCTCTCTAAAGAAGAATTATTCCGAGTAGAAGAAGCTGGAGAAACAGTTAGAGAATCACATTTTTATATCTGCAGTGATAGTCAGTATAAGCTTAATTTAATCGCGAATCAGATCCAGTTGCTGAGAAAAGAAGATCGAGTAGACGTAATATTTATCGATTACTTGCAGTTGATCAACTCATCGGTTGGAGAAAATCGTCAAAATGAAATAGCAGATATATCTAGAACCTTAAGAGGTTTAGCCTCAGAGCTAAACATTCCTATAGTTTGTTTATCCCAACTATCTAGAAAAGTTGAGGATAGAGCAAATAAAGTTCCCATGCTTTCAGATTTGCGAGACAGCGGTCAAATAGAGCAAGACGCAGATGTGATTTTGTTTATCAATAGGAAGGAATCGTCTTCTAATTGTGAGATAACTGTTGGGAAAAATAGACATGGATCGGTTTTCTCTTCGGTATTACATTTCGATCCAAAAATTAG'..b'CTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAAGAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTG\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/consensus_sequence_01.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/consensus_sequence_01.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,2 @@ +>selected_cluster_consensus +GAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTGAAAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATCTTTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACACTTTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/consensus_sequence_02.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/consensus_sequence_02.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,2 @@ +>selected_cluster_consensus +GAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTGAAAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATCTTTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACACTTTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/consensus_sequence_03.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/consensus_sequence_03.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,2 @@ +>selected_cluster_consensus +GAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTGAAAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATCTTTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACACTTTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/consensus_sequence_04.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/consensus_sequence_04.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,2 @@ +>selected_cluster_consensus +GAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTGAAAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATCTTTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACACTTTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/contigs.newick --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contigs.newick Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,1 @@ +((((cluster_2_B_contig_2_7509_bp_0.9x:5.887425e-05,cluster_2_C_contig_2_7512_bp_0.9x:0.00018102075):0.000122718,cluster_2_D_contig_2_7501_bp_0.9x:0.000167791):0.0001726985,cluster_2_A_contig_2_7505_bp_0.8x:0.00037792675):0.1245773238,((cluster_1_A_contig_1_1044289_bp_0.4x:6.8750625e-05,cluster_1_B_contig_1_1044294_bp_0.4x:7.4752375e-05):3.009875e-06,(cluster_1_C_contig_1_1044312_bp_0.4x:2.0925325e-05,cluster_1_D_contig_1_1044321_bp_0.4x:2.902075e-06):6.2847675e-05):0.1249699881); |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/contigs.phylip --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contigs.phylip Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,9 @@ +8 +cluster_1_A_contig_1_1044289_bp_0.4x 0.0 0.25 0.000143503 0.25 0.000167546 0.25 0.000119496 0.25 +cluster_2_A_contig_2_7505_bp_0.8x 0.25 0.0 0.25 0.000830728 0.25 0.000830728 0.25 0.000680979 +cluster_1_B_contig_1_1044294_bp_0.4x 0.000143503 0.25 0.0 0.25 0.000167546 0.25 0.000143503 0.25 +cluster_2_B_contig_2_7509_bp_0.9x 0.25 0.000830728 0.25 0.0 0.25 0.000239895 0.25 0.00028831 +cluster_1_C_contig_1_1044312_bp_0.4x 0.000167546 0.25 0.000167546 0.25 0.0 0.25 2.38274e-05 0.25 +cluster_2_C_contig_2_7512_bp_0.9x 0.25 0.000830728 0.25 0.000239895 0.25 0.0 0.25 0.000532603 +cluster_1_D_contig_1_1044321_bp_0.4x 0.000119496 0.25 0.000143503 0.25 2.38274e-05 0.25 0.0 0.25 +cluster_2_D_contig_2_7501_bp_0.9x 0.25 0.000680979 0.25 0.00028831 0.25 0.000532603 0.25 0.0 |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/contigs_01.newick --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contigs_01.newick Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,1 @@ +((((cluster_2_B_contig_2_7509_bp_0.9x:5.887425e-05,cluster_2_C_contig_2_7512_bp_0.9x:0.00018102075):0.000122718,cluster_2_D_contig_2_7501_bp_0.9x:0.000167791):0.0001726985,cluster_2_A_contig_2_7505_bp_0.8x:0.00037792675):0.1245773238,((cluster_1_A_contig_1_1044289_bp_0.4x:6.8750625e-05,cluster_1_B_contig_1_1044294_bp_0.4x:7.4752375e-05):3.009875e-06,(cluster_1_C_contig_1_1044312_bp_0.4x:2.0925325e-05,cluster_1_D_contig_1_1044321_bp_0.4x:2.902075e-06):6.2847675e-05):0.1249699881); |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/contigs_01.phylip --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contigs_01.phylip Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,9 @@ +8 +cluster_1_A_contig_1_1044289_bp_0.4x 0.0 0.25 0.000143503 0.25 0.000167546 0.25 0.000119496 0.25 +cluster_2_A_contig_2_7505_bp_0.8x 0.25 0.0 0.25 0.000830728 0.25 0.000830728 0.25 0.000680979 +cluster_1_B_contig_1_1044294_bp_0.4x 0.000143503 0.25 0.0 0.25 0.000167546 0.25 0.000143503 0.25 +cluster_2_B_contig_2_7509_bp_0.9x 0.25 0.000830728 0.25 0.0 0.25 0.000239895 0.25 0.00028831 +cluster_1_C_contig_1_1044312_bp_0.4x 0.000167546 0.25 0.000167546 0.25 0.0 0.25 2.38274e-05 0.25 +cluster_2_C_contig_2_7512_bp_0.9x 0.25 0.000830728 0.25 0.000239895 0.25 0.0 0.25 0.000532603 +cluster_1_D_contig_1_1044321_bp_0.4x 0.000119496 0.25 0.000143503 0.25 2.38274e-05 0.25 0.0 0.25 +cluster_2_D_contig_2_7501_bp_0.9x 0.25 0.000680979 0.25 0.00028831 0.25 0.000532603 0.25 0.0 |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/contigs_02.newick --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contigs_02.newick Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,1 @@ +((((cluster_2_B_contig_2_7509_bp_0.9x:5.887425e-05,cluster_2_C_contig_2_7512_bp_0.9x:0.00018102075):0.000122718,cluster_2_D_contig_2_7501_bp_0.9x:0.000167791):0.0001726985,cluster_2_A_contig_2_7505_bp_0.8x:0.00037792675):0.1245773238,((cluster_1_A_contig_1_1044289_bp_0.4x:6.8750625e-05,cluster_1_B_contig_1_1044294_bp_0.4x:7.4752375e-05):3.009875e-06,(cluster_1_C_contig_1_1044312_bp_0.4x:2.0925325e-05,cluster_1_D_contig_1_1044321_bp_0.4x:2.902075e-06):6.2847675e-05):0.1249699881); |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/contigs_02.phylip --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contigs_02.phylip Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,9 @@ +8 +cluster_1_A_contig_1_1044289_bp_0.4x 0.0 0.25 0.000143503 0.25 0.000167546 0.25 0.000119496 0.25 +cluster_2_A_contig_2_7505_bp_0.8x 0.25 0.0 0.25 0.000830728 0.25 0.000830728 0.25 0.000680979 +cluster_1_B_contig_1_1044294_bp_0.4x 0.000143503 0.25 0.0 0.25 0.000167546 0.25 0.000143503 0.25 +cluster_2_B_contig_2_7509_bp_0.9x 0.25 0.000830728 0.25 0.0 0.25 0.000239895 0.25 0.00028831 +cluster_1_C_contig_1_1044312_bp_0.4x 0.000167546 0.25 0.000167546 0.25 0.0 0.25 2.38274e-05 0.25 +cluster_2_C_contig_2_7512_bp_0.9x 0.25 0.000830728 0.25 0.000239895 0.25 0.0 0.25 0.000532603 +cluster_1_D_contig_1_1044321_bp_0.4x 0.000119496 0.25 0.000143503 0.25 2.38274e-05 0.25 0.0 0.25 +cluster_2_D_contig_2_7501_bp_0.9x 0.25 0.000680979 0.25 0.00028831 0.25 0.000532603 0.25 0.0 |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/contigs_03.newick --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contigs_03.newick Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,1 @@ +((((cluster_2_B_contig_2_7509_bp_0.9x:5.887425e-05,cluster_2_C_contig_2_7512_bp_0.9x:0.00018102075):0.000122718,cluster_2_D_contig_2_7501_bp_0.9x:0.000167791):0.0001726985,cluster_2_A_contig_2_7505_bp_0.8x:0.00037792675):0.1245773238,((cluster_1_A_contig_1_1044289_bp_0.4x:6.8750625e-05,cluster_1_B_contig_1_1044294_bp_0.4x:7.4752375e-05):3.009875e-06,(cluster_1_C_contig_1_1044312_bp_0.4x:2.0925325e-05,cluster_1_D_contig_1_1044321_bp_0.4x:2.902075e-06):6.2847675e-05):0.1249699881); |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/contigs_03.phylip --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contigs_03.phylip Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,9 @@ +8 +cluster_1_A_contig_1_1044289_bp_0.4x 0.0 0.25 0.000143503 0.25 0.000167546 0.25 0.000119496 0.25 +cluster_2_A_contig_2_7505_bp_0.8x 0.25 0.0 0.25 0.000830728 0.25 0.000830728 0.25 0.000680979 +cluster_1_B_contig_1_1044294_bp_0.4x 0.000143503 0.25 0.0 0.25 0.000167546 0.25 0.000143503 0.25 +cluster_2_B_contig_2_7509_bp_0.9x 0.25 0.000830728 0.25 0.0 0.25 0.000239895 0.25 0.00028831 +cluster_1_C_contig_1_1044312_bp_0.4x 0.000167546 0.25 0.000167546 0.25 0.0 0.25 2.38274e-05 0.25 +cluster_2_C_contig_2_7512_bp_0.9x 0.25 0.000830728 0.25 0.000239895 0.25 0.0 0.25 0.000532603 +cluster_1_D_contig_1_1044321_bp_0.4x 0.000119496 0.25 0.000143503 0.25 2.38274e-05 0.25 0.0 0.25 +cluster_2_D_contig_2_7501_bp_0.9x 0.25 0.000680979 0.25 0.00028831 0.25 0.000532603 0.25 0.0 |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/contigs_04.newick --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contigs_04.newick Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,1 @@ +((((cluster_2_B_contig_2_7509_bp_0.9x:5.887425e-05,cluster_2_C_contig_2_7512_bp_0.9x:0.00018102075):0.000122718,cluster_2_D_contig_2_7501_bp_0.9x:0.000167791):0.0001726985,cluster_2_A_contig_2_7505_bp_0.8x:0.00037792675):0.1245773238,((cluster_1_A_contig_1_1044289_bp_0.4x:6.8750625e-05,cluster_1_B_contig_1_1044294_bp_0.4x:7.4752375e-05):3.009875e-06,(cluster_1_C_contig_1_1044312_bp_0.4x:2.0925325e-05,cluster_1_D_contig_1_1044321_bp_0.4x:2.902075e-06):6.2847675e-05):0.1249699881); |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/contigs_04.phylip --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contigs_04.phylip Thu Feb 11 19:25:20 2021 +0000 |
| b |
| @@ -0,0 +1,9 @@ +8 +cluster_1_A_contig_1_1044289_bp_0.4x 0.0 0.25 0.000143503 0.25 0.000167546 0.25 0.000119496 0.25 +cluster_2_A_contig_2_7505_bp_0.8x 0.25 0.0 0.25 0.000830728 0.25 0.000830728 0.25 0.000680979 +cluster_1_B_contig_1_1044294_bp_0.4x 0.000143503 0.25 0.0 0.25 0.000167546 0.25 0.000143503 0.25 +cluster_2_B_contig_2_7509_bp_0.9x 0.25 0.000830728 0.25 0.0 0.25 0.000239895 0.25 0.00028831 +cluster_1_C_contig_1_1044312_bp_0.4x 0.000167546 0.25 0.000167546 0.25 0.0 0.25 2.38274e-05 0.25 +cluster_2_C_contig_2_7512_bp_0.9x 0.25 0.000830728 0.25 0.000239895 0.25 0.0 0.25 0.000532603 +cluster_1_D_contig_1_1044321_bp_0.4x 0.000119496 0.25 0.000143503 0.25 2.38274e-05 0.25 0.0 0.25 +cluster_2_D_contig_2_7501_bp_0.9x 0.25 0.000680979 0.25 0.00028831 0.25 0.000532603 0.25 0.0 |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/partition_01.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/partition_01.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,8 @@\n+@9338f89c-9c8c-4211-6a74-39502715849d plasmid,-strand,2029-4838 length=2819 error-free_length=2928 read_identity=92.34%\n+ATCTGCAGTGATGGTCAGTATAAGCAATTTAATCGCGAATCGAGATCCAGTTGCTGAAAAAGAAGATCGAGTAGCGTAATATTTATCGATTACTTGCAGTTGAGCAACTCATCGGTTGGAAAAATCGTCAAAATGAAATAGCGATATATCTAGAACCTTAAGAGTTAGCCTTCAGAGCTAAACATTCCTATAGTTTGTTTATCCCAACTATCTAGAAAAGTTGAGGATAGAGCAAATAAAGTTCCCATGCTTTCAGATTTGCGCAGACAGCGGTCAAATAGTAGCAAGACGCAGATCGTTTGTTTATCAATAGGAAGGATCGTCTTCTAGTTGTGAGATAACTGGGAACAATAGACATGGATCGGTTTTCCTTCGGTATTACATTCGATCCAAAATTGATTAAATTCTCGCTATTTAAAAAGTATGGTAAATTATAGTAACTGCCGCTTCATCAAAGTTATCCACCGAGAAATCAGAAGTTTGAAAGACCTGGTCAATCTATTAGATATCTCCCAATTGGCTAAAATGGATGGTAGAAGTTAATAGGTCTTGATTTTCTTTCATTCTCATTACCATGCATTAAAGCTATCAAAGATTACTGACCGCAACGAATTACAAGGGGAACTACAAAGGGGTTATTTTATCCAGAGAATCAAATAGTTTTCAATTTGAAGGATGGATACCAAGAATCGTTTTGCAAAAACTGACGTTCTTAGGGGCTTATGGGTTAAGCGGTATAAAACATCCAGAAATAAGTATGAGTTTAGGTGGAAAAAAGCTGAACTGCTTTAGAAGCCTTATACCATCTACAGACTGATGTGCAGCCGCCCGCACAAAGGGTGTATTACGGCCGATGTGGACTGGACTACTGTCCATGCCATTCCCAGTGGCTAGACTAGAACTCGATGGACTAATTGGAACACAAATAGTAGACCGTTACCAACTCTTTCTCCGATCATTAGGATTTACGAATGGGAAGGTTTAACTGACGAGAACATGTTACGGAAGAAATCGTCTGATGGGATTTGCGTCTAGGTCCCACATGCTAGGAATTGGTCGCAATTAGTCTGCCCGAAACTCGCCTGGTACGTTTTCGCCTCCGAAGCAGTTCGTAGTGACCATGTCCCTATCTTGGTAGATCAAATGAATCCTACTTGTCAAGCCTGCAAATGTATATCCAAAAAATAAAAATGCGTTTCCAAATGCATCAAGAGTATGCTTACACATTTATCGACTGGGTGATTACAGCAGCTGCGAAAAAGAGACGAAAATTACTAAGGGTAATTCTTGGCCAGAAAACTTGTTATTAAACGTTAACGTTAAAGTCTTGCATATATTTTTAAGGATGAATCGGTACATCTGTACAAGGAACTGGAAAAATCGTTAGCTATCGATAAAATAGAAATCATTCAACATGGTTATCTAGAAGAAAACGATATTGAATTTCTGGATTCTTCTAAACCTCTCTAAAAAGAATTCTAATCTAAATAAAAAGCGCTTTGAAGAAATAACTAAGAAATCTAAAGAAATGGAACAATTAGGAACAAGAATCTATTAATTAATAACAACTGAAACTAAAAGCCTAATTTATTTAGACTCCAAAATAAAAAACGGTTTAAATGGATTCTGGTTTTTATTTGTATAACACTGAAAACTGCATCTTCGCTGATAATATCGAGTTGGGCAAATGACAGAGCCGCTCAAGGACCAGCAAATAAATCCTTGGGACAACATCACCGTCGCAGCCAAAATGACAGCTTCTGATGGAATATCTTTAACAGTCTCAATAATTCATCAACCAATGCTTCTATTACGAATTGGTTTTGGATGCGAAAAAGCTTACAGCTTATTCTAGAAAAGTTGGATCAAATTCTTGATGGAATTGCTGATACTGTGTTGATATCCAAGATATTTTAGACAAAAACAGACCCTTCCTCTAGGTTTGTTGAAAGCTTTTAACAACTTTCCAATCACTAAGTAAAATTCAATGCAACGGGTTATTCTCCCAGTAGCATTGAAACTTTATTAGGAGGAACTGAAATAGGAAAATTCACAGTCCACCCAAAAGCTCTGGGGTATGTTATTAGTCTCAGCAGATAATATTGCATCAAGAATGGAAGGCAACGTTGTTCCTAGCTTTGGTACGAGAAGGTGATCCAGCCCTGCGCGATTAGTTATAGGATACTCATCAGGCGTTCCTAATTTGTAGTCTAAGAACCAGCATTACTAATACAGGTGACTCCAACAACGTATTCATTACGTGTAGGCGGTTTAGAAAGCGGTGTGGTATGGGTTGTGCCCTTTCTAATGGCAATGATATTTTAGGAATATAAATACTCTAATGTATCTTTTTGGAGTAATACCTCGAAACAAACGCTAAACAATTTTTATTTAGTTTTTCTTATAGGTTTTATATTTAGAGAAAACAGTTCGATTACGGGGTTTGTTATGCAAAATAAAGAAAAGTGAGGACGATTTTGTTTAAATTGTTTAAAGATGTGAAAAAAGATTTCCCCGAATTAGACCTAAAATACGAGTAAACAAGGAGAAGTAACTTTCTTAAATTCTCCCTTAGAACTCTACCATAAAAGTGTCTCCTAATTCTAGGACTGCTTCAACAAATAGAAAACTCTTTAAGGATTATTCCCAGACTCTCCTGTTCTTGAAAATTAGAGGATAGCAGTTTAAAGCTAAAAAGGCTTTGATTATGCTTATCTTTGTCTAGAAAAGACATGTTTTCCAAGGTGAATAGACAACACTCTAACGTTGGAGTTGATTTGCACCTTGAGTTTTTGCTCTTTTAAGGAGGACTGAAAAAA\n++\n+:54'%,,0048-,-1:'-7;90-%(/8,+*1/6547/,096&%+31&.1-3(*4-6'48),1,*<543:152(*,9;/%*8.-*$868&,/.1/0/,-9125/'2)7*-5/0&4&$/;8'1<1:8*.391.26/2:.<)5155-,4-8./-4).-4/0408.&+())&1*/42&5/0515-+6:/.1+023*%-1-7:+2;'-2/7/,)040:8-4(167+++35,%45).1(<235.41(.4*1./'6,<.$1,39*.)),06#2/.)%4/50-*4823*6)0*2.'64-+)2&($)2)()8%&27+0+7,93;2-9;*5-.40))7+*-.('/03;464*8+,'-,*'+05900-,870&;0+<22*6-<%9++.5/)41.%&,<(+*/*0%(+$0,+0*'8.403,,-'.'1),(22//6/0/'6409*.20+09.;7/.1'').15)%2&:'(%+/47;380+))+.-+&+,64+4)2,$'&)0.(.:158-.28*42)(,.1/85+708-/(**+,,&11&4-(:%-,.526480)52*),,4--.+%':2+5.,,:05(*/&-(/1.,,,.,+6*&%+//*/*0(9)-34/554&*:2977(--6:5+6642314*/&9&1$2(3*9)5-+3*/:437%336(54593:722,*--84+78;(%/(.*67/*.,.368)+//6,6-)*63'+*+;)*3<,++%1'6/),.'.6)11.,1(7:)%,.'1.4)-12/,5+,5*04-<+/196030+5/10/:0-+-244:.41382008-450816-.4.5/,77+-*3'8+%**'')/+../)(3(-$*+'35&%';+*.1&(31+0,).3$$&)((+*%**:.5&*.(5+/3(18((::00,4:,4.')52)4//&'&0+3)745*)28061<7&,0()*))//44;/*91768'/31200,6&4/)0;-1372,14/.1:;/,)-300203(/8+++.+(:6;0*):09,0;544+8),0++/4/2.6:)4-+/.'(8..003'5-36681,-.2*28-,"..b"CACTCAAGGGAACCACAAATAATCGCTGAACAACATCAACACCTGTCGCAGCCAAAGTAACAACTTCTGTATTGAATATTATCTTTAGCAGTCTCCAATAATTCATCAATAAATGCTTCTGTTACAGGTGGTTTTGCGGTTGCAGAATAGCTTACCGGCTTATTCTAGAAAAGTTGGGAGATCGAATTCTTGATGGAAATTGCGATATATTGATGATATTAATACGATCAAGACATTTTAGACAAAATCAAAACGGACCATTCCTCTAGGTTGTTGAAACTTTTTACAACTTTCCAATCACTAATAAAATTCATGCAACAGCGTTATTCACTCGTAAGCATTGAAAACCTTTAGGGAGGAACTGAATGAAAAATTCACGGTCACACAAAGCTCTGGGAGCATGTTCTTAGTCTCAGCAAATAATATTGCATCATGAATGAAGGCACGTTATTGTTTAGCTTTGGTGCGAGAGGTGATTCTAAGGCACCGCGATTGAGTTGTGGATGCTCCATCAGGCGTTCTACAATTTATGTAGCCTAAGAGCATTACTATACAAAGATTGACTCCAAAGTATTCATTACGTTGGCGGTTGAGAAGCGATGTGGTATGGAGTTAATACCTTTCCTCATGGCAATGTTTTTTTGGGAATAACAAATACTTCTAATGTATCTTTTTTTTGGAAGTAATACCACCACCGCAAACAAGCTTAAACAGATTTTATTAGATTTTTCTTATGATAGTCTTTAATTTAAACAGCTCGAGATTGCAAGGGGTTTGTTATGCAAAATAAAAGGAAATAGGACGATTTTATTAAAATTGTTAAAGAGGTGAAAAAAGAATTTCCAAAATTAGACCTAAAATACGACGTAAACCAGGATAAAAGTAACTTTTAAATTC\n++\n+810*(&(&/*8'').%%+2)*))7*')0,5;,-,**873831-9:965+0($$(6/78+.'&%(.*'-%9+)-/%*0)&(**-,4*&;,%-.&,&3&'*&.,6().(.%%*-'('(1)0-3<--*:'-3133:/1+56+#(,*68(%/1)*2&)+0/01('(9+#'&$)'**)(,&%$,158-964(*82*%--6.4:*,/37&)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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/partition_02.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/partition_02.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,8 @@\n+@9338f89c-9c8c-4211-6a74-39502715849d plasmid,-strand,2029-4838 length=2819 error-free_length=2928 read_identity=92.34%\n+ATCTGCAGTGATGGTCAGTATAAGCAATTTAATCGCGAATCGAGATCCAGTTGCTGAAAAAGAAGATCGAGTAGCGTAATATTTATCGATTACTTGCAGTTGAGCAACTCATCGGTTGGAAAAATCGTCAAAATGAAATAGCGATATATCTAGAACCTTAAGAGTTAGCCTTCAGAGCTAAACATTCCTATAGTTTGTTTATCCCAACTATCTAGAAAAGTTGAGGATAGAGCAAATAAAGTTCCCATGCTTTCAGATTTGCGCAGACAGCGGTCAAATAGTAGCAAGACGCAGATCGTTTGTTTATCAATAGGAAGGATCGTCTTCTAGTTGTGAGATAACTGGGAACAATAGACATGGATCGGTTTTCCTTCGGTATTACATTCGATCCAAAATTGATTAAATTCTCGCTATTTAAAAAGTATGGTAAATTATAGTAACTGCCGCTTCATCAAAGTTATCCACCGAGAAATCAGAAGTTTGAAAGACCTGGTCAATCTATTAGATATCTCCCAATTGGCTAAAATGGATGGTAGAAGTTAATAGGTCTTGATTTTCTTTCATTCTCATTACCATGCATTAAAGCTATCAAAGATTACTGACCGCAACGAATTACAAGGGGAACTACAAAGGGGTTATTTTATCCAGAGAATCAAATAGTTTTCAATTTGAAGGATGGATACCAAGAATCGTTTTGCAAAAACTGACGTTCTTAGGGGCTTATGGGTTAAGCGGTATAAAACATCCAGAAATAAGTATGAGTTTAGGTGGAAAAAAGCTGAACTGCTTTAGAAGCCTTATACCATCTACAGACTGATGTGCAGCCGCCCGCACAAAGGGTGTATTACGGCCGATGTGGACTGGACTACTGTCCATGCCATTCCCAGTGGCTAGACTAGAACTCGATGGACTAATTGGAACACAAATAGTAGACCGTTACCAACTCTTTCTCCGATCATTAGGATTTACGAATGGGAAGGTTTAACTGACGAGAACATGTTACGGAAGAAATCGTCTGATGGGATTTGCGTCTAGGTCCCACATGCTAGGAATTGGTCGCAATTAGTCTGCCCGAAACTCGCCTGGTACGTTTTCGCCTCCGAAGCAGTTCGTAGTGACCATGTCCCTATCTTGGTAGATCAAATGAATCCTACTTGTCAAGCCTGCAAATGTATATCCAAAAAATAAAAATGCGTTTCCAAATGCATCAAGAGTATGCTTACACATTTATCGACTGGGTGATTACAGCAGCTGCGAAAAAGAGACGAAAATTACTAAGGGTAATTCTTGGCCAGAAAACTTGTTATTAAACGTTAACGTTAAAGTCTTGCATATATTTTTAAGGATGAATCGGTACATCTGTACAAGGAACTGGAAAAATCGTTAGCTATCGATAAAATAGAAATCATTCAACATGGTTATCTAGAAGAAAACGATATTGAATTTCTGGATTCTTCTAAACCTCTCTAAAAAGAATTCTAATCTAAATAAAAAGCGCTTTGAAGAAATAACTAAGAAATCTAAAGAAATGGAACAATTAGGAACAAGAATCTATTAATTAATAACAACTGAAACTAAAAGCCTAATTTATTTAGACTCCAAAATAAAAAACGGTTTAAATGGATTCTGGTTTTTATTTGTATAACACTGAAAACTGCATCTTCGCTGATAATATCGAGTTGGGCAAATGACAGAGCCGCTCAAGGACCAGCAAATAAATCCTTGGGACAACATCACCGTCGCAGCCAAAATGACAGCTTCTGATGGAATATCTTTAACAGTCTCAATAATTCATCAACCAATGCTTCTATTACGAATTGGTTTTGGATGCGAAAAAGCTTACAGCTTATTCTAGAAAAGTTGGATCAAATTCTTGATGGAATTGCTGATACTGTGTTGATATCCAAGATATTTTAGACAAAAACAGACCCTTCCTCTAGGTTTGTTGAAAGCTTTTAACAACTTTCCAATCACTAAGTAAAATTCAATGCAACGGGTTATTCTCCCAGTAGCATTGAAACTTTATTAGGAGGAACTGAAATAGGAAAATTCACAGTCCACCCAAAAGCTCTGGGGTATGTTATTAGTCTCAGCAGATAATATTGCATCAAGAATGGAAGGCAACGTTGTTCCTAGCTTTGGTACGAGAAGGTGATCCAGCCCTGCGCGATTAGTTATAGGATACTCATCAGGCGTTCCTAATTTGTAGTCTAAGAACCAGCATTACTAATACAGGTGACTCCAACAACGTATTCATTACGTGTAGGCGGTTTAGAAAGCGGTGTGGTATGGGTTGTGCCCTTTCTAATGGCAATGATATTTTAGGAATATAAATACTCTAATGTATCTTTTTGGAGTAATACCTCGAAACAAACGCTAAACAATTTTTATTTAGTTTTTCTTATAGGTTTTATATTTAGAGAAAACAGTTCGATTACGGGGTTTGTTATGCAAAATAAAGAAAAGTGAGGACGATTTTGTTTAAATTGTTTAAAGATGTGAAAAAAGATTTCCCCGAATTAGACCTAAAATACGAGTAAACAAGGAGAAGTAACTTTCTTAAATTCTCCCTTAGAACTCTACCATAAAAGTGTCTCCTAATTCTAGGACTGCTTCAACAAATAGAAAACTCTTTAAGGATTATTCCCAGACTCTCCTGTTCTTGAAAATTAGAGGATAGCAGTTTAAAGCTAAAAAGGCTTTGATTATGCTTATCTTTGTCTAGAAAAGACATGTTTTCCAAGGTGAATAGACAACACTCTAACGTTGGAGTTGATTTGCACCTTGAGTTTTTGCTCTTTTAAGGAGGACTGAAAAAA\n++\n+:54'%,,0048-,-1:'-7;90-%(/8,+*1/6547/,096&%+31&.1-3(*4-6'48),1,*<543:152(*,9;/%*8.-*$868&,/.1/0/,-9125/'2)7*-5/0&4&$/;8'1<1:8*.391.26/2:.<)5155-,4-8./-4).-4/0408.&+())&1*/42&5/0515-+6:/.1+023*%-1-7:+2;'-2/7/,)040:8-4(167+++35,%45).1(<235.41(.4*1./'6,<.$1,39*.)),06#2/.)%4/50-*4823*6)0*2.'64-+)2&($)2)()8%&27+0+7,93;2-9;*5-.40))7+*-.('/03;464*8+,'-,*'+05900-,870&;0+<22*6-<%9++.5/)41.%&,<(+*/*0%(+$0,+0*'8.403,,-'.'1),(22//6/0/'6409*.20+09.;7/.1'').15)%2&:'(%+/47;380+))+.-+&+,64+4)2,$'&)0.(.:158-.28*42)(,.1/85+708-/(**+,,&11&4-(:%-,.526480)52*),,4--.+%':2+5.,,:05(*/&-(/1.,,,.,+6*&%+//*/*0(9)-34/554&*:2977(--6:5+6642314*/&9&1$2(3*9)5-+3*/:437%336(54593:722,*--84+78;(%/(.*67/*.,.368)+//6,6-)*63'+*+;)*3<,++%1'6/),.'.6)11.,1(7:)%,.'1.4)-12/,5+,5*04-<+/196030+5/10/:0-+-244:.41382008-450816-.4.5/,77+-*3'8+%**'')/+../)(3(-$*+'35&%';+*.1&(31+0,).3$$&)((+*%**:.5&*.(5+/3(18((::00,4:,4.')52)4//&'&0+3)745*)28061<7&,0()*))//44;/*91768'/31200,6&4/)0;-1372,14/.1:;/,)-300203(/8+++.+(:6;0*):09,0;544+8),0++/4/2.6:)4-+/.'(8..003'5-36681,-.2*28-,"..b"CACTCAAGGGAACCACAAATAATCGCTGAACAACATCAACACCTGTCGCAGCCAAAGTAACAACTTCTGTATTGAATATTATCTTTAGCAGTCTCCAATAATTCATCAATAAATGCTTCTGTTACAGGTGGTTTTGCGGTTGCAGAATAGCTTACCGGCTTATTCTAGAAAAGTTGGGAGATCGAATTCTTGATGGAAATTGCGATATATTGATGATATTAATACGATCAAGACATTTTAGACAAAATCAAAACGGACCATTCCTCTAGGTTGTTGAAACTTTTTACAACTTTCCAATCACTAATAAAATTCATGCAACAGCGTTATTCACTCGTAAGCATTGAAAACCTTTAGGGAGGAACTGAATGAAAAATTCACGGTCACACAAAGCTCTGGGAGCATGTTCTTAGTCTCAGCAAATAATATTGCATCATGAATGAAGGCACGTTATTGTTTAGCTTTGGTGCGAGAGGTGATTCTAAGGCACCGCGATTGAGTTGTGGATGCTCCATCAGGCGTTCTACAATTTATGTAGCCTAAGAGCATTACTATACAAAGATTGACTCCAAAGTATTCATTACGTTGGCGGTTGAGAAGCGATGTGGTATGGAGTTAATACCTTTCCTCATGGCAATGTTTTTTTGGGAATAACAAATACTTCTAATGTATCTTTTTTTTGGAAGTAATACCACCACCGCAAACAAGCTTAAACAGATTTTATTAGATTTTTCTTATGATAGTCTTTAATTTAAACAGCTCGAGATTGCAAGGGGTTTGTTATGCAAAATAAAAGGAAATAGGACGATTTTATTAAAATTGTTAAAGAGGTGAAAAAAGAATTTCCAAAATTAGACCTAAAATACGACGTAAACCAGGATAAAAGTAACTTTTAAATTC\n++\n+810*(&(&/*8'').%%+2)*))7*')0,5;,-,**873831-9:965+0($$(6/78+.'&%(.*'-%9+)-/%*0)&(**-,4*&;,%-.&,&3&'*&.,6().(.%%*-'('(1)0-3<--*:'-3133:/1+56+#(,*68(%/1)*2&)+0/01('(9+#'&$)'**)(,&%$,158-964(*82*%--6.4:*,/37&)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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/partition_03.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/partition_03.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,8 @@\n+@9338f89c-9c8c-4211-6a74-39502715849d plasmid,-strand,2029-4838 length=2819 error-free_length=2928 read_identity=92.34%\n+ATCTGCAGTGATGGTCAGTATAAGCAATTTAATCGCGAATCGAGATCCAGTTGCTGAAAAAGAAGATCGAGTAGCGTAATATTTATCGATTACTTGCAGTTGAGCAACTCATCGGTTGGAAAAATCGTCAAAATGAAATAGCGATATATCTAGAACCTTAAGAGTTAGCCTTCAGAGCTAAACATTCCTATAGTTTGTTTATCCCAACTATCTAGAAAAGTTGAGGATAGAGCAAATAAAGTTCCCATGCTTTCAGATTTGCGCAGACAGCGGTCAAATAGTAGCAAGACGCAGATCGTTTGTTTATCAATAGGAAGGATCGTCTTCTAGTTGTGAGATAACTGGGAACAATAGACATGGATCGGTTTTCCTTCGGTATTACATTCGATCCAAAATTGATTAAATTCTCGCTATTTAAAAAGTATGGTAAATTATAGTAACTGCCGCTTCATCAAAGTTATCCACCGAGAAATCAGAAGTTTGAAAGACCTGGTCAATCTATTAGATATCTCCCAATTGGCTAAAATGGATGGTAGAAGTTAATAGGTCTTGATTTTCTTTCATTCTCATTACCATGCATTAAAGCTATCAAAGATTACTGACCGCAACGAATTACAAGGGGAACTACAAAGGGGTTATTTTATCCAGAGAATCAAATAGTTTTCAATTTGAAGGATGGATACCAAGAATCGTTTTGCAAAAACTGACGTTCTTAGGGGCTTATGGGTTAAGCGGTATAAAACATCCAGAAATAAGTATGAGTTTAGGTGGAAAAAAGCTGAACTGCTTTAGAAGCCTTATACCATCTACAGACTGATGTGCAGCCGCCCGCACAAAGGGTGTATTACGGCCGATGTGGACTGGACTACTGTCCATGCCATTCCCAGTGGCTAGACTAGAACTCGATGGACTAATTGGAACACAAATAGTAGACCGTTACCAACTCTTTCTCCGATCATTAGGATTTACGAATGGGAAGGTTTAACTGACGAGAACATGTTACGGAAGAAATCGTCTGATGGGATTTGCGTCTAGGTCCCACATGCTAGGAATTGGTCGCAATTAGTCTGCCCGAAACTCGCCTGGTACGTTTTCGCCTCCGAAGCAGTTCGTAGTGACCATGTCCCTATCTTGGTAGATCAAATGAATCCTACTTGTCAAGCCTGCAAATGTATATCCAAAAAATAAAAATGCGTTTCCAAATGCATCAAGAGTATGCTTACACATTTATCGACTGGGTGATTACAGCAGCTGCGAAAAAGAGACGAAAATTACTAAGGGTAATTCTTGGCCAGAAAACTTGTTATTAAACGTTAACGTTAAAGTCTTGCATATATTTTTAAGGATGAATCGGTACATCTGTACAAGGAACTGGAAAAATCGTTAGCTATCGATAAAATAGAAATCATTCAACATGGTTATCTAGAAGAAAACGATATTGAATTTCTGGATTCTTCTAAACCTCTCTAAAAAGAATTCTAATCTAAATAAAAAGCGCTTTGAAGAAATAACTAAGAAATCTAAAGAAATGGAACAATTAGGAACAAGAATCTATTAATTAATAACAACTGAAACTAAAAGCCTAATTTATTTAGACTCCAAAATAAAAAACGGTTTAAATGGATTCTGGTTTTTATTTGTATAACACTGAAAACTGCATCTTCGCTGATAATATCGAGTTGGGCAAATGACAGAGCCGCTCAAGGACCAGCAAATAAATCCTTGGGACAACATCACCGTCGCAGCCAAAATGACAGCTTCTGATGGAATATCTTTAACAGTCTCAATAATTCATCAACCAATGCTTCTATTACGAATTGGTTTTGGATGCGAAAAAGCTTACAGCTTATTCTAGAAAAGTTGGATCAAATTCTTGATGGAATTGCTGATACTGTGTTGATATCCAAGATATTTTAGACAAAAACAGACCCTTCCTCTAGGTTTGTTGAAAGCTTTTAACAACTTTCCAATCACTAAGTAAAATTCAATGCAACGGGTTATTCTCCCAGTAGCATTGAAACTTTATTAGGAGGAACTGAAATAGGAAAATTCACAGTCCACCCAAAAGCTCTGGGGTATGTTATTAGTCTCAGCAGATAATATTGCATCAAGAATGGAAGGCAACGTTGTTCCTAGCTTTGGTACGAGAAGGTGATCCAGCCCTGCGCGATTAGTTATAGGATACTCATCAGGCGTTCCTAATTTGTAGTCTAAGAACCAGCATTACTAATACAGGTGACTCCAACAACGTATTCATTACGTGTAGGCGGTTTAGAAAGCGGTGTGGTATGGGTTGTGCCCTTTCTAATGGCAATGATATTTTAGGAATATAAATACTCTAATGTATCTTTTTGGAGTAATACCTCGAAACAAACGCTAAACAATTTTTATTTAGTTTTTCTTATAGGTTTTATATTTAGAGAAAACAGTTCGATTACGGGGTTTGTTATGCAAAATAAAGAAAAGTGAGGACGATTTTGTTTAAATTGTTTAAAGATGTGAAAAAAGATTTCCCCGAATTAGACCTAAAATACGAGTAAACAAGGAGAAGTAACTTTCTTAAATTCTCCCTTAGAACTCTACCATAAAAGTGTCTCCTAATTCTAGGACTGCTTCAACAAATAGAAAACTCTTTAAGGATTATTCCCAGACTCTCCTGTTCTTGAAAATTAGAGGATAGCAGTTTAAAGCTAAAAAGGCTTTGATTATGCTTATCTTTGTCTAGAAAAGACATGTTTTCCAAGGTGAATAGACAACACTCTAACGTTGGAGTTGATTTGCACCTTGAGTTTTTGCTCTTTTAAGGAGGACTGAAAAAA\n++\n+:54'%,,0048-,-1:'-7;90-%(/8,+*1/6547/,096&%+31&.1-3(*4-6'48),1,*<543:152(*,9;/%*8.-*$868&,/.1/0/,-9125/'2)7*-5/0&4&$/;8'1<1:8*.391.26/2:.<)5155-,4-8./-4).-4/0408.&+())&1*/42&5/0515-+6:/.1+023*%-1-7:+2;'-2/7/,)040:8-4(167+++35,%45).1(<235.41(.4*1./'6,<.$1,39*.)),06#2/.)%4/50-*4823*6)0*2.'64-+)2&($)2)()8%&27+0+7,93;2-9;*5-.40))7+*-.('/03;464*8+,'-,*'+05900-,870&;0+<22*6-<%9++.5/)41.%&,<(+*/*0%(+$0,+0*'8.403,,-'.'1),(22//6/0/'6409*.20+09.;7/.1'').15)%2&:'(%+/47;380+))+.-+&+,64+4)2,$'&)0.(.:158-.28*42)(,.1/85+708-/(**+,,&11&4-(:%-,.526480)52*),,4--.+%':2+5.,,:05(*/&-(/1.,,,.,+6*&%+//*/*0(9)-34/554&*:2977(--6:5+6642314*/&9&1$2(3*9)5-+3*/:437%336(54593:722,*--84+78;(%/(.*67/*.,.368)+//6,6-)*63'+*+;)*3<,++%1'6/),.'.6)11.,1(7:)%,.'1.4)-12/,5+,5*04-<+/196030+5/10/:0-+-244:.41382008-450816-.4.5/,77+-*3'8+%**'')/+../)(3(-$*+'35&%';+*.1&(31+0,).3$$&)((+*%**:.5&*.(5+/3(18((::00,4:,4.')52)4//&'&0+3)745*)28061<7&,0()*))//44;/*91768'/31200,6&4/)0;-1372,14/.1:;/,)-300203(/8+++.+(:6;0*):09,0;544+8),0++/4/2.6:)4-+/.'(8..003'5-36681,-.2*28-,"..b"CACTCAAGGGAACCACAAATAATCGCTGAACAACATCAACACCTGTCGCAGCCAAAGTAACAACTTCTGTATTGAATATTATCTTTAGCAGTCTCCAATAATTCATCAATAAATGCTTCTGTTACAGGTGGTTTTGCGGTTGCAGAATAGCTTACCGGCTTATTCTAGAAAAGTTGGGAGATCGAATTCTTGATGGAAATTGCGATATATTGATGATATTAATACGATCAAGACATTTTAGACAAAATCAAAACGGACCATTCCTCTAGGTTGTTGAAACTTTTTACAACTTTCCAATCACTAATAAAATTCATGCAACAGCGTTATTCACTCGTAAGCATTGAAAACCTTTAGGGAGGAACTGAATGAAAAATTCACGGTCACACAAAGCTCTGGGAGCATGTTCTTAGTCTCAGCAAATAATATTGCATCATGAATGAAGGCACGTTATTGTTTAGCTTTGGTGCGAGAGGTGATTCTAAGGCACCGCGATTGAGTTGTGGATGCTCCATCAGGCGTTCTACAATTTATGTAGCCTAAGAGCATTACTATACAAAGATTGACTCCAAAGTATTCATTACGTTGGCGGTTGAGAAGCGATGTGGTATGGAGTTAATACCTTTCCTCATGGCAATGTTTTTTTGGGAATAACAAATACTTCTAATGTATCTTTTTTTTGGAAGTAATACCACCACCGCAAACAAGCTTAAACAGATTTTATTAGATTTTTCTTATGATAGTCTTTAATTTAAACAGCTCGAGATTGCAAGGGGTTTGTTATGCAAAATAAAAGGAAATAGGACGATTTTATTAAAATTGTTAAAGAGGTGAAAAAAGAATTTCCAAAATTAGACCTAAAATACGACGTAAACCAGGATAAAAGTAACTTTTAAATTC\n++\n+810*(&(&/*8'').%%+2)*))7*')0,5;,-,**873831-9:965+0($$(6/78+.'&%(.*'-%9+)-/%*0)&(**-,4*&;,%-.&,&3&'*&.,6().(.%%*-'('(1)0-3<--*:'-3133:/1+56+#(,*68(%/1)*2&)+0/01('(9+#'&$)'**)(,&%$,158-964(*82*%--6.4:*,/37&)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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/partition_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/partition_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,8 @@\n+@9338f89c-9c8c-4211-6a74-39502715849d plasmid,-strand,2029-4838 length=2819 error-free_length=2928 read_identity=92.34%\n+ATCTGCAGTGATGGTCAGTATAAGCAATTTAATCGCGAATCGAGATCCAGTTGCTGAAAAAGAAGATCGAGTAGCGTAATATTTATCGATTACTTGCAGTTGAGCAACTCATCGGTTGGAAAAATCGTCAAAATGAAATAGCGATATATCTAGAACCTTAAGAGTTAGCCTTCAGAGCTAAACATTCCTATAGTTTGTTTATCCCAACTATCTAGAAAAGTTGAGGATAGAGCAAATAAAGTTCCCATGCTTTCAGATTTGCGCAGACAGCGGTCAAATAGTAGCAAGACGCAGATCGTTTGTTTATCAATAGGAAGGATCGTCTTCTAGTTGTGAGATAACTGGGAACAATAGACATGGATCGGTTTTCCTTCGGTATTACATTCGATCCAAAATTGATTAAATTCTCGCTATTTAAAAAGTATGGTAAATTATAGTAACTGCCGCTTCATCAAAGTTATCCACCGAGAAATCAGAAGTTTGAAAGACCTGGTCAATCTATTAGATATCTCCCAATTGGCTAAAATGGATGGTAGAAGTTAATAGGTCTTGATTTTCTTTCATTCTCATTACCATGCATTAAAGCTATCAAAGATTACTGACCGCAACGAATTACAAGGGGAACTACAAAGGGGTTATTTTATCCAGAGAATCAAATAGTTTTCAATTTGAAGGATGGATACCAAGAATCGTTTTGCAAAAACTGACGTTCTTAGGGGCTTATGGGTTAAGCGGTATAAAACATCCAGAAATAAGTATGAGTTTAGGTGGAAAAAAGCTGAACTGCTTTAGAAGCCTTATACCATCTACAGACTGATGTGCAGCCGCCCGCACAAAGGGTGTATTACGGCCGATGTGGACTGGACTACTGTCCATGCCATTCCCAGTGGCTAGACTAGAACTCGATGGACTAATTGGAACACAAATAGTAGACCGTTACCAACTCTTTCTCCGATCATTAGGATTTACGAATGGGAAGGTTTAACTGACGAGAACATGTTACGGAAGAAATCGTCTGATGGGATTTGCGTCTAGGTCCCACATGCTAGGAATTGGTCGCAATTAGTCTGCCCGAAACTCGCCTGGTACGTTTTCGCCTCCGAAGCAGTTCGTAGTGACCATGTCCCTATCTTGGTAGATCAAATGAATCCTACTTGTCAAGCCTGCAAATGTATATCCAAAAAATAAAAATGCGTTTCCAAATGCATCAAGAGTATGCTTACACATTTATCGACTGGGTGATTACAGCAGCTGCGAAAAAGAGACGAAAATTACTAAGGGTAATTCTTGGCCAGAAAACTTGTTATTAAACGTTAACGTTAAAGTCTTGCATATATTTTTAAGGATGAATCGGTACATCTGTACAAGGAACTGGAAAAATCGTTAGCTATCGATAAAATAGAAATCATTCAACATGGTTATCTAGAAGAAAACGATATTGAATTTCTGGATTCTTCTAAACCTCTCTAAAAAGAATTCTAATCTAAATAAAAAGCGCTTTGAAGAAATAACTAAGAAATCTAAAGAAATGGAACAATTAGGAACAAGAATCTATTAATTAATAACAACTGAAACTAAAAGCCTAATTTATTTAGACTCCAAAATAAAAAACGGTTTAAATGGATTCTGGTTTTTATTTGTATAACACTGAAAACTGCATCTTCGCTGATAATATCGAGTTGGGCAAATGACAGAGCCGCTCAAGGACCAGCAAATAAATCCTTGGGACAACATCACCGTCGCAGCCAAAATGACAGCTTCTGATGGAATATCTTTAACAGTCTCAATAATTCATCAACCAATGCTTCTATTACGAATTGGTTTTGGATGCGAAAAAGCTTACAGCTTATTCTAGAAAAGTTGGATCAAATTCTTGATGGAATTGCTGATACTGTGTTGATATCCAAGATATTTTAGACAAAAACAGACCCTTCCTCTAGGTTTGTTGAAAGCTTTTAACAACTTTCCAATCACTAAGTAAAATTCAATGCAACGGGTTATTCTCCCAGTAGCATTGAAACTTTATTAGGAGGAACTGAAATAGGAAAATTCACAGTCCACCCAAAAGCTCTGGGGTATGTTATTAGTCTCAGCAGATAATATTGCATCAAGAATGGAAGGCAACGTTGTTCCTAGCTTTGGTACGAGAAGGTGATCCAGCCCTGCGCGATTAGTTATAGGATACTCATCAGGCGTTCCTAATTTGTAGTCTAAGAACCAGCATTACTAATACAGGTGACTCCAACAACGTATTCATTACGTGTAGGCGGTTTAGAAAGCGGTGTGGTATGGGTTGTGCCCTTTCTAATGGCAATGATATTTTAGGAATATAAATACTCTAATGTATCTTTTTGGAGTAATACCTCGAAACAAACGCTAAACAATTTTTATTTAGTTTTTCTTATAGGTTTTATATTTAGAGAAAACAGTTCGATTACGGGGTTTGTTATGCAAAATAAAGAAAAGTGAGGACGATTTTGTTTAAATTGTTTAAAGATGTGAAAAAAGATTTCCCCGAATTAGACCTAAAATACGAGTAAACAAGGAGAAGTAACTTTCTTAAATTCTCCCTTAGAACTCTACCATAAAAGTGTCTCCTAATTCTAGGACTGCTTCAACAAATAGAAAACTCTTTAAGGATTATTCCCAGACTCTCCTGTTCTTGAAAATTAGAGGATAGCAGTTTAAAGCTAAAAAGGCTTTGATTATGCTTATCTTTGTCTAGAAAAGACATGTTTTCCAAGGTGAATAGACAACACTCTAACGTTGGAGTTGATTTGCACCTTGAGTTTTTGCTCTTTTAAGGAGGACTGAAAAAA\n++\n+:54'%,,0048-,-1:'-7;90-%(/8,+*1/6547/,096&%+31&.1-3(*4-6'48),1,*<543:152(*,9;/%*8.-*$868&,/.1/0/,-9125/'2)7*-5/0&4&$/;8'1<1:8*.391.26/2:.<)5155-,4-8./-4).-4/0408.&+())&1*/42&5/0515-+6:/.1+023*%-1-7:+2;'-2/7/,)040:8-4(167+++35,%45).1(<235.41(.4*1./'6,<.$1,39*.)),06#2/.)%4/50-*4823*6)0*2.'64-+)2&($)2)()8%&27+0+7,93;2-9;*5-.40))7+*-.('/03;464*8+,'-,*'+05900-,870&;0+<22*6-<%9++.5/)41.%&,<(+*/*0%(+$0,+0*'8.403,,-'.'1),(22//6/0/'6409*.20+09.;7/.1'').15)%2&:'(%+/47;380+))+.-+&+,64+4)2,$'&)0.(.:158-.28*42)(,.1/85+708-/(**+,,&11&4-(:%-,.526480)52*),,4--.+%':2+5.,,:05(*/&-(/1.,,,.,+6*&%+//*/*0(9)-34/554&*:2977(--6:5+6642314*/&9&1$2(3*9)5-+3*/:437%336(54593:722,*--84+78;(%/(.*67/*.,.368)+//6,6-)*63'+*+;)*3<,++%1'6/),.'.6)11.,1(7:)%,.'1.4)-12/,5+,5*04-<+/196030+5/10/:0-+-244:.41382008-450816-.4.5/,77+-*3'8+%**'')/+../)(3(-$*+'35&%';+*.1&(31+0,).3$$&)((+*%**:.5&*.(5+/3(18((::00,4:,4.')52)4//&'&0+3)745*)28061<7&,0()*))//44;/*91768'/31200,6&4/)0;-1372,14/.1:;/,)-300203(/8+++.+(:6;0*):09,0;544+8),0++/4/2.6:)4-+/.'(8..003'5-36681,-.2*28-,"..b"CACTCAAGGGAACCACAAATAATCGCTGAACAACATCAACACCTGTCGCAGCCAAAGTAACAACTTCTGTATTGAATATTATCTTTAGCAGTCTCCAATAATTCATCAATAAATGCTTCTGTTACAGGTGGTTTTGCGGTTGCAGAATAGCTTACCGGCTTATTCTAGAAAAGTTGGGAGATCGAATTCTTGATGGAAATTGCGATATATTGATGATATTAATACGATCAAGACATTTTAGACAAAATCAAAACGGACCATTCCTCTAGGTTGTTGAAACTTTTTACAACTTTCCAATCACTAATAAAATTCATGCAACAGCGTTATTCACTCGTAAGCATTGAAAACCTTTAGGGAGGAACTGAATGAAAAATTCACGGTCACACAAAGCTCTGGGAGCATGTTCTTAGTCTCAGCAAATAATATTGCATCATGAATGAAGGCACGTTATTGTTTAGCTTTGGTGCGAGAGGTGATTCTAAGGCACCGCGATTGAGTTGTGGATGCTCCATCAGGCGTTCTACAATTTATGTAGCCTAAGAGCATTACTATACAAAGATTGACTCCAAAGTATTCATTACGTTGGCGGTTGAGAAGCGATGTGGTATGGAGTTAATACCTTTCCTCATGGCAATGTTTTTTTGGGAATAACAAATACTTCTAATGTATCTTTTTTTTGGAAGTAATACCACCACCGCAAACAAGCTTAAACAGATTTTATTAGATTTTTCTTATGATAGTCTTTAATTTAAACAGCTCGAGATTGCAAGGGGTTTGTTATGCAAAATAAAAGGAAATAGGACGATTTTATTAAAATTGTTAAAGAGGTGAAAAAAGAATTTCCAAAATTAGACCTAAAATACGACGTAAACCAGGATAAAAGTAACTTTTAAATTC\n++\n+810*(&(&/*8'').%%+2)*))7*')0,5;,-,**873831-9:965+0($$(6/78+.'&%(.*'-%9+)-/%*0)&(**-,4*&;,%-.&,&3&'*&.,6().(.%%*-'('(1)0-3<--*:'-3133:/1+56+#(,*68(%/1)*2&)+0/01('(9+#'&$)'**)(,&%$,158-964(*82*%--6.4:*,/37&)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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/reads.fastq.gz |
| b |
| Binary file test-data/reads.fastq.gz has changed |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/reconciled_cluster_01.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/reconciled_cluster_01.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTGAAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATCTTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACACTTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGA'..b'CATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/reconciled_cluster_02.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/reconciled_cluster_02.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTGAAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATCTTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACACTTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGA'..b'CATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/reconciled_cluster_03.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/reconciled_cluster_03.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTGAAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATCTTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACACTTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGA'..b'CATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/reconciled_cluster_04.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/reconciled_cluster_04.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTGAAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATCTTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACACTTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGA'..b'CATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/reconciled_cluster_05.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/reconciled_cluster_05.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTGAAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATCTTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACACTTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGA'..b'CATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/reconciled_cluster_06.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/reconciled_cluster_06.fasta Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,8 @@\n+>A_contig_2\n+GAGTACATCGGTCAACGAAGAGGTTTTGTCTTCGTAACTCGCTCCGGAAAAATGGTGGGGTTAAGGCAAATCGCCCGCACGTTCTCTCAAGCAGGACTACAAGCTGCAATCCCTTTTAAGATAACCCCGCACGTGCTTCGAGCAACCGCTGTGACGGAGTACAAACGCCTAGGGTGCTCAGACTCCGACATAATGAAGGTCACGGGACACGCAACCGCAAAGATGATATTTGCGTACGATAAATCCTCTCGAGAAGACAATGCTTCAAAGAAGATGGCTCTAATATAGCCTAAAGGTGTTTTTTCTGGCAACAGAATATGAATATAATTTTAATTATATCACAATATTGTGGGTGTTTGTACTAGAGGACTTACCTCTTCCCCAGAACAATAAGAACACACACTTTGTCTCGATGAGAGACAGGAAATACGCATGATTTCCTCATCTTTTAATCCTATTTGCTTTAAATGAATCAAAGCGCTTGCACGAAGTACTCTGGGAGTAATTTTTATTTTCATAGCACTATGGAACTCTGCAAGCCTAAAATTATGCGCAACCTGACTTGTTGTTACAGGAATCCCTATTTTAGAAACAAATACTCTCCCATTTCTCCCACAAGTGTATTTTTGCAACTCTTCCATTAAGCTGATAGGAAATGTGATTAGAATTTTGGTTTCTTTATTCTGTCTTTTTTAATGCGAAAGGAAATCTGATTGGATGCAAAAAATAGATCGTCTGTGCGCAAAGACAAAATTTCGTCTAACTTACGGATCCCTTGTACAATCAATTTACCGATTAAATAGTCTCTATAATTCACTATCCGGAGCGCTTCAAAAAAACTGTCCATTCCTGCTTAGAAATCGATTCTGTTTTGATTTTGTCTCGGATTTTAAAAAATGTAGTGTTTCCAAAATCTTTCAATGGAATAGCGGGTTTAATATATCCCTTGGTCAATCTATACAAAAACTTTGTGAAAGATATGTAGCATGCCGCTCTAGCCTGTTTAGAGGCCTCTGAAACGACTTTTCCATTAAAAACATCTAGAGACTTGATTTTAAACAAAGATTCGCTGTGGTCAAGAGAAATAGCCTTTATCAAGGTTTCCGATAAATCCAGAATCTCTAAAGAAACAAGAAAGTTAATCCCAGACGCATAATTTTTTCTAGTTAGATGAGATAAAGTAGATAACCAAATTTCCGACGCGTCCCCAAAAGTTAAGAACAATCTACTTTTATGGAAAGCCATCGAGCCCATTTTCTTAACCAAAGCTATTCAAAATCGGAGCTCTAAGATTTTAAGAAATTTTTTAACAAAAGTCCATTATGACCAAGTCTACCACCCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAAGTCTACCACCAAGAGTTGCAAATCTCTCTCGTAAAATCAAATCCCTAAATAAATATATATATAATAAATATATATATGAGCTGACGGAGGATCAGCTCTTTTGCTTAAAAAGTTCAAAAAGCTGTTGTAGAAGATTTTCGTTATAGGAGGACAAAGAAACTCCGGAACATATGATGCGAAGTATCTCTATTAAGAAATCAGATAATTGGCGATTCTTCTCTGAATCAGACTTATCTATCGTTTCTCTAACGTCTTTGTTTCTAGATGAAGGAAGAAATTGATCCAACACCCTTATCGCCGATGAGTTCGACATTCCACATACTTTCCCTATCACATCGACCTTGGTTTTTAAATCGCCTTTTCTAGCGGCCAAAATATATGCGGATTTATAGGGGATCGATTGAAACTCTTTTTGTAGAGTTTGGTTGGGGAGGTTTATAAAAAGCTCGTAATATGCAAGAGCATTGTAAGCAGAAGACTTAGTTCTAAAAACTAACTCTATCCAAGATGAAAAAGTTGTTGAGGAGAAGTGATCCTTACTCAGGATTTTTCTAGCATTATAGATTTTTTCTCCTAAAAGAAGTACGTGTTGCTTCTGTATGGATTTTATCTGACCAGTAAGCAGTTTTACCGCTAGGATGTCTTCTTGATAAAATTCTTCATCCGAATAGTTTTGGGACTCTGATAAAAATAATCGATCCAAACTCTGACTTTCCTCAGAATTCAAAGTTGCTGAGAATAGTTCAATGGAAGGAAGTGTCTTCTTAAAATCTAGAGAAGCGGCAGTTTGATTTTTTTAAAAAAGACATCCGCTTCTTTTTTTAGTTTGTTCACGTTGTCCTCTGAGAGTAATCTCGTTCATATTCGATATGCAAAATATTTGCTATTTCATGCGTTAACTTCAGAATATCTTCTGCGGCCCTAGAATTTGGATAGACATTAGCTACAGAATCTTCTTTAAGAAGAGAACGGCTGAGAGAAATATCTCGACGAATTTTTGTTGAAAAAGCTTGTTTTTGTAAATAGACTCGATAATGTCTATATACATTTGGTTAGTCGAGTTACGATCATCCCAAAAAGACAAAGCTATTCCAAGAATGTGTTCTTCTTCAGGTTTTCCGACCGAACTTAAGAATTCACGTATCTTTTGTAACCCTAGAATAGAAAAAGGTTCTGGAGTTAAACAAACAATTAATTTGTCTCCTGCAACAAAAGCTTCTTTCGTTAACCCTCCTAGGCTAGGTGGAGTGTCTATTATGCAGATGTCATAAAAAGGAGCGCAGTACTCATTCAGAAATAACTTTAAGTTGTTACTAGGTCCTCTATGAATATCCAATTCTCTAAACTGTTCGGATAAAAATGATGCAGGAATTAGGTCCACACTATCTTTTTTGTTTCGCAAATGATTGATTTTAAATCGTTTGATGTGTATACTATGTCGTGCAAGCCTTTTTGGTTACTTCTGACACTAGCCCCCAATCCAGAAGATAAATTGGATTGCGGGTCTAGGTCAGCAAGTAACACTTTTTCCCTAAAAATTGGGCCAAGTTGCATCCCACGTTTAGAGAAAGTGTTGTTTTTCCAGTTCCTCCCTTAAAAGAGCAAAAAACTAAGGTGTGCAAATCAACTCCAACGTTAGAGTAAGTTGTCTATTCAGCCTTGGAAAACATGTCTTTTCTAGACAAGATAAGCATAATCAAAGCCTTTTTTAGCTTTAAACTGTTATCCTCTAATTTTTCAAGAACAGGAGAGTCTGGGAATAATCCTAAAGAGTTTTCTATTTGTTGAAGCAGTCCTAGAATTAGTGAGACACTTTTATGGTAGAGTTCTAAGGGAGAATTTAAGAAAGTTACTTTTTCCTTGTTTACTCGTATTTTTAGGTCTAATTCGGGGAAATCTTTTTTCACATCTTTAACAATTTTAATAAAATCGTCCCTCACTTTTCTTTTATTTTGCATAACAAACCCCGTAATTCGAACTGTTTTCTCTAAATATAAAACCTATAAGAAAAATCCAATAAAAATTGTTTAAGCGTTTGTTTGAGGTATTACTTCCAAAAAAGATACATTAGAAGTATTTGTTATTCCTAAAATATCATTGCCATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGA'..b'CATTAGAAAGGGCATTAACCCATACCACACCGCTTTCTAAACCGCCTACACGTAATGAATACGTTGTTGGAGTCAATCCTGTATTAGTAATGCTGGTTCTTAGACTACATAAATTAGGAACGCCTGATGAGTATCCATAACTAATCGCGCAGGGCTTAGAATCACCTTCTCGTACCAAAGCTAGAACAACGCCGCCTTCCATTCTTGATGCAATAATATCTGCTGAGACTAAGAACATGCTCCCAGAGCTTTTGGGTGTGACTGTGAATTTTCCTATTTCAGTTCCTCCTAATAAAGTTTCAATGCTACTGGGAGTGAATAACCCGTTGCATTGAATTTTATTAGTGATTGGAAAGTTGTTAAAAGCTTTCAACAAACCTAGAGAAGGGTCTGTTTTGATTTTGTCTAAAATATCTTGGACTGTATTATCAACAATAGTATCAGCAATTCCATCAAGAATTTGATCTCCCAACTTTTCTAGAATAAGCTGGTAAGCTTTTTCCGCATCCAAACCAATTGTAATAGAAGCATTGGTTGATGAATTATTGGAGACTGTTAAAGATATTCCATCAGAAGCTGTCATTTTGGCTGCGACAGGTGTTGATGTTGTCCCAAGGATTATTTGCTGGTCCTTGAGCGGCTCTGTCATTTGCCCAACTTTGATATTATCAGCAAAGACGCAGTTTTCAGTGTTATACAAATAAAAACCAGAATTTCCCATTTTAAAACTCTTTTTTATTTTGAGCTTTAAATAAATTAGGTTTTTAGTTTCAAGCTTGCTATTAATTAATAGATTCTTGTTCTAATTGTTCCATTTGTTCTTTAGATTTCTTAGTTATTTCTTCAAAGCGCTCTTTATTTAGATATAGAATTTCTTTTTTAGAGAGTTTAGAAGAATCCAGAAATTCAATACGTTTTCTTCTAGATAACCAGCCAAGCTGAATGGCGATTTCTATACATTTATCGATAGCTAACTCGATTTTTTTCCAGTTCCTTGTACAGATGTACCGATTCATCCTTAAAATATATGCAAGACTTTTAACGTTAACGTTTAATAACAAGTTTTCTGGCCAAGAATTATCCTTAGTTAATTTTCGTCTCTTTTTCGCAGCTGCTGTAATCACCCAGTCGATAAATGTGTAAGCATACTTTGATGCATTTGGGAAACGCATTTTTATTTCTTGGTATACATTTGCAGGCTTGATTACAAAGTAGGATTCTATTTGATCTACCAAGATAGGACATGGCTCTACAACGAACCCTTTATGTTTCCGTGTAGATGGTGAATTAAAAGGTGTTAAGTCTATATCTATATTTTCTTCGTCAGTTAAACCTTCCCATCCTTCGTAAATCCTAATGATCGGAGAAAGAGTTTGGTAACGGTCTACTATTTGTGTTCCATTAGTCCATCGAGTTCTAGTTGCCACTATTAAAAACGGTTGATGTCCTAAATGGTATAAGGCTTCTAAAGCAGTTTCAGCTTCTTTTCCACTAAACTCATACTTATTTCTGGATGTTTTATACCGCTTAACTCCATAAGCCTCTAAGAATTCAGTTTTTGTAAAACGGATTCTTGGTATCCATCCTTCAAATTGAAAACTATTTGATTCTCTGGATAAAATAACCCCTTTTGTGTTCCCCTTGTAATTCGTTGCGGTCAGTAATCTTTGGATAGCTGCTAATGCATGGTAATGAGATGAAAGAAAATCAAGACCTATAACTTCTACCATCCCATTTTGAGCCAATTTGGGAGATATCTTAATAGATTGACCAGGTCTTCTTCCAAACTTCTGATTTTCAAGGTGGATAGGACTTTTGATGAAGTGGCAGTTACTATAATTTACCATACTTTTTTAATAGCGGAGAATTTACTAATTTTTGGATCGAAATGTAATACCGAAGAGAAAACCGATCCATGTCTATTTTTCCCAACAGTTATCTCACAATTAGAAGACGATTCCTTCCTATTGATAAACAAAATCACATCTGCGTCTTGCTCTATTTGACCGCTGTCTCGCAAATCTGAAAGCATGGGAACTTTATTTGCTCTATCCTCAACTTTTCTAGATAGTTGGGATAAACAAACTATAGGAATGTTTAGCTCTGAGGCTAAACCTCTTAAGGTTCTAGATATATCTGCTATTTCATTTTGACGATTTTCTCCAACCGATGAGTTGATCAACTGCAAGTAATCGATAAATATTACGTCTACTCGATCTTCTTTTCTCAGCAACTGGATCTGATTCGCGATTAAATTAAGCTTATACTGACTATCACTGCAGATATAAAAATGTGATTCTCTAACTGTTTCTCCAGCTTCTTCTACTCGGAATAATTCTTCTTTAGAGAGATCCCCTCTTTGTAATTTTTCACCAGATATTCCTGTTAAATTAGCAATAATCCGCTCAACAATTTGACCTGCGCTCATTTCTAGAGATAGGAAACCAACTCTACGCTGTTGAGTAACCGCAAGATTTATCGCCATGTCTATAGCTAAAGCTGTTTTCCCTATAGATGGCCTAGCTGCTATAATCACGAAATTACCTTTAGCTAAGATAACTCCTTTATCATCAATATCCTTGTATCCTGTTGGGAAGCCATCAAAGAAAGAATTTTGATTCTCAGAGAACGCTGCTCGTCTTTTTTTATACGAGCCAGCACTCCAATTTCTGACTGTGAGAATATATCATAAATAGACCGGCCTCTAGCGCTGCGAATAGAAAAAGTCTTTGCTATAGCACTATCAAGCCTTCCCTTTATACGCTCAAGCAATAGAAACGGAGATCTACGCAATGGATTTTCATTGTACTCATTAAACGAGCGGAAAATGAAATTGCTCAAATTTTCTTCAGCGCTACACACGCTCAAATCATCGAGGAAAACCGTATGAGAAACGGATCTAAGCTTGTCATTTGATAAAGCATCATGCAACATTAACCCGAGATACGATTTGTCCATATCTTTGATACGACGCCGCAAAAGCTCTTCCCAAGCCGAGTCTACAGTTATAGGTAATCCATTGTCTTTTAAGTATTTAAATACTATGAATATGTTTTTATGATGGGAACACTTAAACTCATAATTAGCAAGCTGCCTCAGAATATACTCAGTAGAGTCTTCAAATATCAGAGCTTTACCTAACAACGCATACTCGATATCTTGCATGCGATTTTCTATTTCGGAACGAGTTTTCATGTTTATATAAAAAAATACCGAGCGTGCTATCCTGTTAACAACCTGATTATTTCACTAATCAGGACATTTTGCGGATAGGTTATATCACGAGGGATTTCATGGGTAAAGGGATTTTATCTTTGCAGCAAGAAATGTCGTTAGAATATAGCGAAAAGTCTTATCAGGAAGTTTTAAAAATTCGCCAAGAATCCTATTGGAAACGCATGAAAAGCTTCTCCTTATTCGAAGTTATTATGCATTGGACCGCATCACTCAACAAACATACTTGTAGATCATATCGAGGATCTTTTTTGTCTTTAGAAAAGATTGGTCTATTGTCTTTGGATATGAATCTGCAAGAGTTTTCCCTTTTAAATCATAATCTAATCCTAGATGCGATTAAAAAAGTTTCCTCTGCCAAGACTTCTTGGACCGAAGGTACTAAACAAGTTCGAGCAGCAAGCTATATTTCCTTAACAAGATTCCTAAACAGGATGACTCAAGGAATAGTCGCTATAGCGCAACCTTCTAAACAAGAAAATAGTCGAACATTTTTTAAAACCAGGGAAATAGTAAAAACGGATGCGATGAACAGTTTGCAAACAGCATCCTTCCTAAAAGAGCTAAAAAAAATCAACGCCCGGGATTGGTTGATCGCCCAGACAATGCTCCAAGGAGGTAAACGCTCCTCTGAAGTCTTAAGCTTGGAGATTAGTCAGATTTGTTTCCAACAAGCTACCATTTCTTTCTCCCAGCTTAAGAACCGTCAGACAGAAAAGAGGATTATTATAACTTATCCTCAGAAGTTTATGCACTTTCTACAA\n' |
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_01_01.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_01_01.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,268 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_01_02.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_01_02.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,284 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_01_03.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_01_03.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,304 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_01_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_01_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,336 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_02_01.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_02_01.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,268 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_02_02.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_02_02.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,284 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_02_03.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_02_03.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,304 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_02_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_02_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,336 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_03_01.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_03_01.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,268 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_03_02.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_03_02.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,284 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_03_03.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_03_03.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,304 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_03_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_03_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,336 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_04_01.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_04_01.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,268 @@\n+@915048ed-cfdf-2e72-cae2-7cd225d95427 chromosome,-strand,127398-149788 length=21560 error-free_length=22548 read_identity=87.12%\n+ATCAGAACAATGTATTCTTTGGGCAAAATGCAGAGCGTACAATAAGCTCAAAGCGCGATAGCCACAGCAAATCGCTGTTCTGCTGCGTAAACTACTCAAAACGACCAAAGCCTCTCACTCTGACGCTGATGAAAAAAACGGTCTCCAAAAACTTCGGATGCCTTAGTAAAACAAAAATTCATTCGCATTGTCGGTAAACGGAATCTGGAAATCAGGGCAACAACTCATTATTTCCTCCGCCCCCATCTCATCAGACAACTAGTGCAGTCCAATGCTCTCGCAATCACTCGTTGGAACAATTTCAAACCTGTCTGCTATTCGGGTGACAGGGAGCGGGAAACTGAAGTGTATCTGCAGATCATTCAGCAAAGCTAGAGCTTTAGGAAAGGCGTGATTCTTCTTGTCCCTGAGGTAGCTTTTACCATTCAAACGCTTTCCTTTTTTAATCGCGCTTAGTTCAAAGTGGGCGTTTTACACTACAAAGTTAGAGTGACGGTGCGTACAAGACCTGGCACAAGGACGTCCGAGGCCTAATTAACATCATTATAAGGCCCTCGTCCGGCCATTTTTCTGTCTATACAAAACTTAGGATCATTATTGCGGATGAAGAGCTTACGACAGCGCCTATAAACAAAAAGCGGTGCCTCGCTTTTTATCCAAGCTCGGATATGGCTGTCATGCGAGGGGAAAAATGACCAGTGCTACAGTCATCCCTGGGGAGTGCCACTCTCAAGTTTAGAAAGTTACGATGCCTTATTCGAATAATACACGCTTTCGTTCTCTAGAAAAGAGCTTCTACGTCTACTCTACTAAAGTCGTTCTTATCACGACATGAACTTGGAGATGGAAAAAAATCGGAAAAAGCCTTTCTTCTCTCAAGCGGTCATTCGGAGCATCGAGCAGCGTTGGAAGTAGGAGAACAGACCTTATTTTCTTCCAATCGTCGGATTCCATACTAATGTGTATCCTGCTCATCATCGTAAGTAGCACATTGAAATGTCCTCCATTTTGACGCATGATTCCTGACGTTCACAAAACTGAGCAGTCTTGTGTCACCTTTGCAACACCCACGCCTCTACAAAACCCATTACCTCATGCCCTCAATGCCTGAGCACTATGACACTTCATACGAAGGCTGGAACAGAAAAATTGAGAGCTTCTCCGAATTACTTCCAACCAGCCGCACTACACGGCTAGATTCGACACCACGGTCGCGGAAGTCCGTGCTTTAGTTAAACAATTTGCCACAGGGATAGCCGATATTCTTGTTAGCACACAAATGATTGCAAAAGGTAATACTTTCTCGTGACCTCTTTCTTAGTTAAGCGAAGACTCTCTGGTCTATATATCCCAGATTTTCGAGCAGCAGAACAGTCTTTCAACTGATTACCAATGTCACTGGGCTCAGGACGCACCCACCTTCCGAGAGAAGGTTCTTATCCAAACATTTCTTCTCAAACTCCGACTATATCTCATGCTTGGCACAAGATTTCCCAGCTTTCTGCAAGGAAGAATCTTAGGGAGAAAGTATGTAACTACTCCTCCGTTCACACGACTAATCCGCTGTATTTTGAAGAATGCTCGGATTATACTTTAAAGGAAACTCAACGTGTACACACACTGAAGTACACAAAATTTGGATTCTCGAAGCCTCTCTTATGGAAATATCTCCTTGATGGACATTTCAAAAGTAAAAGGCTTATTTCACCTATCGTTCTAATCAAACTCGTCAACATCACCTCGGTAGCGAATAACAGGTTCAAGGGCTTTAGCCGCTGTAAAATTGATCCTCTAAGAGTGCGTTACATTGTTGATGTGAATCCGTTACGACATTCCTTCCTGATACGTTACTGCTCGGCAAGCAACGAAACCAAAATATCTACTTCTTGTTCGGTAATTCAAAAGCATGTAAATTGGCTCGCAGTACCTTTACCTGTAGGAGGACAAGCGACTCCAACACGAATGCCATAACAACCTAATTTATTGATACAATTCCTGCTCGAATGAAGACGGTTGCACAAATCAGCGCTGCCATAGATTTTTGAGCAAAATAGTACACGAATACGACGTAATCGTGTTCTCACCAAGTTCTCCTTCTTATGAATTCGTATGCAACTTGTATAGATATTAACAAATAAGCAGGTGATTCCTTAGAAAGACTTACCATGAGTTCTTTGATCAAATCCTGCATTCCCTCGGCGATAACCAAGCTGCACCGCGGATCCAAAGCTTTACTGAGTAAGAGAGTACCGAATAAAATTTCATACCCTAACGGACACAAAATCCACCTTCCCAGCGTCTCCAAATAATCCACAACGCTTCATCAACTATCACTGAGCGTGATACTGATGGATGACATGCCACTATTTGCTCCAAAGAGCGAAAGACCCTTAAAGAATAAACAGAACAGACGGGGATAAATACTCGTTGAAAACCACGTGCTGACAAGCTCTAATAAAGTCGGATGATCTAATCATTATAGAAACTCTGATGCCACCCCGACAAAAAAACAGATGATTGAAACAGGATAATATGACCTGCTCGTCCCCATAGCATAATTCCGCTACGGAAGATAGATGCACAAATCGCAGTGTTCGCAGCCAAAACCACTTGGCAAATAAGAGCTTCTGGAGCTCGGCTGAAGTAGCGCTATTTGTTTATACCCATCTAACAGCGAGAAGAGCCTACAATGGCGCGAACCCTCCATAACCTAACTTTGCGCATGGCTTGTCTCTCAATAAAGCCGATAACAGCCTCAACAGCATGAACTAAAGCTATTGAACGAGAAGTCCGAAAATCATTAGTGATAAAAATCAATAGAAAGAGCTTCCTTCAAAAACCCATCCCTCATAGCTATATCATTCAATGATGCAGTCTTATTAGCTAAATAATCGTGCCAAAGCATTTGAACAGTAGTCAGGTTTCCCCGTCCCACAACATAGGGAATCGCTTCCTGATGGCGATAGAAATTTCAATAGTTACTGGTTTAGGAGTTTGGATATCATTTACTTCCCGAAACAGTTGGGAATATCGTGAATAGGCAGACAGCTCTTAACTCCACCAAATTGTACACGGGGTTGACGGAGATATGCGCTGCAATATTTCATGGGAGACGCCAACACCAAAGGGATGATCTGGCATTTTTCGACTCCTTCCATAATAATACGTCTCATTGGCCTCAAGGCTCACCGACTGCCCCAATCTTCACAAAACGACTGGTCGTCCTTTTAAGAATAACTCCCATGGCGATCTACATACCGCAAGTCGCCAGGTGACATACCAGTCTCTCATAACTTTCTATAAGATCCATGTCGAAGTCTTCCCAAATATCCTTTAAATAAGAGAAGTTCCTCGTGTCAGAACCAATTGTTACTCGGTTGATTAGACTTTAGTTTCTTCAGAAACAGTAACACTTCCATACTCTAAGGGCATGCCGTACACAAAGACTCATGTTTCGAACTATTCACGAGATAATAGTGATAACCGGACATTCTGTAGTTCCATATGCTTGACGCAGTGAACATGTGGAGAAAGTTCAAAGCTTGGATATAAAGAGTTTTAAGAAACATCTCACTCCAACAACAACGAACCGCAAGGAGGAAGCGCGGCCTCGCTTTGTCTTAGCGGCATTAGTAATATGAAAGCAGGCGTACTTGGCAAAGTGACCTTCCTTCATTCAATCATCTCGAACTATTTCTTCCCATACAAAGGATTATAGGCAATAACAGGTATCCCTATAGCAAAGGGAAACGGCGTACAAATTGAACCATACGCATGAAACGGGGGAAGGAAGGATATCATTGCATCGTCTTCTTTCGGAAAAGCAATCGAAACGGGCCGTTGGTTAAGC'..b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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_04_02.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_04_02.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,284 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_04_03.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_04_03.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,304 @@\n+@9338f89c-9c8c-4211-6a74-39502715849d plasmid,-strand,2029-4838 length=2819 error-free_length=2928 read_identity=92.34%\n+ATCTGCAGTGATGGTCAGTATAAGCAATTTAATCGCGAATCGAGATCCAGTTGCTGAAAAAGAAGATCGAGTAGCGTAATATTTATCGATTACTTGCAGTTGAGCAACTCATCGGTTGGAAAAATCGTCAAAATGAAATAGCGATATATCTAGAACCTTAAGAGTTAGCCTTCAGAGCTAAACATTCCTATAGTTTGTTTATCCCAACTATCTAGAAAAGTTGAGGATAGAGCAAATAAAGTTCCCATGCTTTCAGATTTGCGCAGACAGCGGTCAAATAGTAGCAAGACGCAGATCGTTTGTTTATCAATAGGAAGGATCGTCTTCTAGTTGTGAGATAACTGGGAACAATAGACATGGATCGGTTTTCCTTCGGTATTACATTCGATCCAAAATTGATTAAATTCTCGCTATTTAAAAAGTATGGTAAATTATAGTAACTGCCGCTTCATCAAAGTTATCCACCGAGAAATCAGAAGTTTGAAAGACCTGGTCAATCTATTAGATATCTCCCAATTGGCTAAAATGGATGGTAGAAGTTAATAGGTCTTGATTTTCTTTCATTCTCATTACCATGCATTAAAGCTATCAAAGATTACTGACCGCAACGAATTACAAGGGGAACTACAAAGGGGTTATTTTATCCAGAGAATCAAATAGTTTTCAATTTGAAGGATGGATACCAAGAATCGTTTTGCAAAAACTGACGTTCTTAGGGGCTTATGGGTTAAGCGGTATAAAACATCCAGAAATAAGTATGAGTTTAGGTGGAAAAAAGCTGAACTGCTTTAGAAGCCTTATACCATCTACAGACTGATGTGCAGCCGCCCGCACAAAGGGTGTATTACGGCCGATGTGGACTGGACTACTGTCCATGCCATTCCCAGTGGCTAGACTAGAACTCGATGGACTAATTGGAACACAAATAGTAGACCGTTACCAACTCTTTCTCCGATCATTAGGATTTACGAATGGGAAGGTTTAACTGACGAGAACATGTTACGGAAGAAATCGTCTGATGGGATTTGCGTCTAGGTCCCACATGCTAGGAATTGGTCGCAATTAGTCTGCCCGAAACTCGCCTGGTACGTTTTCGCCTCCGAAGCAGTTCGTAGTGACCATGTCCCTATCTTGGTAGATCAAATGAATCCTACTTGTCAAGCCTGCAAATGTATATCCAAAAAATAAAAATGCGTTTCCAAATGCATCAAGAGTATGCTTACACATTTATCGACTGGGTGATTACAGCAGCTGCGAAAAAGAGACGAAAATTACTAAGGGTAATTCTTGGCCAGAAAACTTGTTATTAAACGTTAACGTTAAAGTCTTGCATATATTTTTAAGGATGAATCGGTACATCTGTACAAGGAACTGGAAAAATCGTTAGCTATCGATAAAATAGAAATCATTCAACATGGTTATCTAGAAGAAAACGATATTGAATTTCTGGATTCTTCTAAACCTCTCTAAAAAGAATTCTAATCTAAATAAAAAGCGCTTTGAAGAAATAACTAAGAAATCTAAAGAAATGGAACAATTAGGAACAAGAATCTATTAATTAATAACAACTGAAACTAAAAGCCTAATTTATTTAGACTCCAAAATAAAAAACGGTTTAAATGGATTCTGGTTTTTATTTGTATAACACTGAAAACTGCATCTTCGCTGATAATATCGAGTTGGGCAAATGACAGAGCCGCTCAAGGACCAGCAAATAAATCCTTGGGACAACATCACCGTCGCAGCCAAAATGACAGCTTCTGATGGAATATCTTTAACAGTCTCAATAATTCATCAACCAATGCTTCTATTACGAATTGGTTTTGGATGCGAAAAAGCTTACAGCTTATTCTAGAAAAGTTGGATCAAATTCTTGATGGAATTGCTGATACTGTGTTGATATCCAAGATATTTTAGACAAAAACAGACCCTTCCTCTAGGTTTGTTGAAAGCTTTTAACAACTTTCCAATCACTAAGTAAAATTCAATGCAACGGGTTATTCTCCCAGTAGCATTGAAACTTTATTAGGAGGAACTGAAATAGGAAAATTCACAGTCCACCCAAAAGCTCTGGGGTATGTTATTAGTCTCAGCAGATAATATTGCATCAAGAATGGAAGGCAACGTTGTTCCTAGCTTTGGTACGAGAAGGTGATCCAGCCCTGCGCGATTAGTTATAGGATACTCATCAGGCGTTCCTAATTTGTAGTCTAAGAACCAGCATTACTAATACAGGTGACTCCAACAACGTATTCATTACGTGTAGGCGGTTTAGAAAGCGGTGTGGTATGGGTTGTGCCCTTTCTAATGGCAATGATATTTTAGGAATATAAATACTCTAATGTATCTTTTTGGAGTAATACCTCGAAACAAACGCTAAACAATTTTTATTTAGTTTTTCTTATAGGTTTTATATTTAGAGAAAACAGTTCGATTACGGGGTTTGTTATGCAAAATAAAGAAAAGTGAGGACGATTTTGTTTAAATTGTTTAAAGATGTGAAAAAAGATTTCCCCGAATTAGACCTAAAATACGAGTAAACAAGGAGAAGTAACTTTCTTAAATTCTCCCTTAGAACTCTACCATAAAAGTGTCTCCTAATTCTAGGACTGCTTCAACAAATAGAAAACTCTTTAAGGATTATTCCCAGACTCTCCTGTTCTTGAAAATTAGAGGATAGCAGTTTAAAGCTAAAAAGGCTTTGATTATGCTTATCTTTGTCTAGAAAAGACATGTTTTCCAAGGTGAATAGACAACACTCTAACGTTGGAGTTGATTTGCACCTTGAGTTTTTGCTCTTTTAAGGAGGACTGAAAAAA\n++\n+:54'%,,0048-,-1:'-7;90-%(/8,+*1/6547/,096&%+31&.1-3(*4-6'48),1,*<543:152(*,9;/%*8.-*$868&,/.1/0/,-9125/'2)7*-5/0&4&$/;8'1<1:8*.391.26/2:.<)5155-,4-8./-4).-4/0408.&+())&1*/42&5/0515-+6:/.1+023*%-1-7:+2;'-2/7/,)040:8-4(167+++35,%45).1(<235.41(.4*1./'6,<.$1,39*.)),06#2/.)%4/50-*4823*6)0*2.'64-+)2&($)2)()8%&27+0+7,93;2-9;*5-.40))7+*-.('/03;464*8+,'-,*'+05900-,870&;0+<22*6-<%9++.5/)41.%&,<(+*/*0%(+$0,+0*'8.403,,-'.'1),(22//6/0/'6409*.20+09.;7/.1'').15)%2&:'(%+/47;380+))+.-+&+,64+4)2,$'&)0.(.:158-.28*42)(,.1/85+708-/(**+,,&11&4-(:%-,.526480)52*),,4--.+%':2+5.,,:05(*/&-(/1.,,,.,+6*&%+//*/*0(9)-34/554&*:2977(--6:5+6642314*/&9&1$2(3*9)5-+3*/:437%336(54593:722,*--84+78;(%/(.*67/*.,.368)+//6,6-)*63'+*+;)*3<,++%1'6/),.'.6)11.,1(7:)%,.'1.4)-12/,5+,5*04-<+/196030+5/10/:0-+-244:.41382008-450816-.4.5/,77+-*3'8+%**'')/+../)(3(-$*+'35&%';+*.1&(31+0,).3$$&)((+*%**:.5&*.(5+/3(18((::00,4:,4.')52)4//&'&0+3)745*)28061<7&,0()*))//44;/*91768'/31200,6&4/)0;-1372,14/.1:;/,)-300203(/8+++.+(:6;0*):09,0;544+8),0++/4/2.6:)4-+/.'(8..003'5-36681,-.2*28"..b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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_04_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_04_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,336 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_05_02.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_05_02.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,284 @@\n+@915048ed-cfdf-2e72-cae2-7cd225d95427 chromosome,-strand,127398-149788 length=21560 error-free_length=22548 read_identity=87.12%\n+ATCAGAACAATGTATTCTTTGGGCAAAATGCAGAGCGTACAATAAGCTCAAAGCGCGATAGCCACAGCAAATCGCTGTTCTGCTGCGTAAACTACTCAAAACGACCAAAGCCTCTCACTCTGACGCTGATGAAAAAAACGGTCTCCAAAAACTTCGGATGCCTTAGTAAAACAAAAATTCATTCGCATTGTCGGTAAACGGAATCTGGAAATCAGGGCAACAACTCATTATTTCCTCCGCCCCCATCTCATCAGACAACTAGTGCAGTCCAATGCTCTCGCAATCACTCGTTGGAACAATTTCAAACCTGTCTGCTATTCGGGTGACAGGGAGCGGGAAACTGAAGTGTATCTGCAGATCATTCAGCAAAGCTAGAGCTTTAGGAAAGGCGTGATTCTTCTTGTCCCTGAGGTAGCTTTTACCATTCAAACGCTTTCCTTTTTTAATCGCGCTTAGTTCAAAGTGGGCGTTTTACACTACAAAGTTAGAGTGACGGTGCGTACAAGACCTGGCACAAGGACGTCCGAGGCCTAATTAACATCATTATAAGGCCCTCGTCCGGCCATTTTTCTGTCTATACAAAACTTAGGATCATTATTGCGGATGAAGAGCTTACGACAGCGCCTATAAACAAAAAGCGGTGCCTCGCTTTTTATCCAAGCTCGGATATGGCTGTCATGCGAGGGGAAAAATGACCAGTGCTACAGTCATCCCTGGGGAGTGCCACTCTCAAGTTTAGAAAGTTACGATGCCTTATTCGAATAATACACGCTTTCGTTCTCTAGAAAAGAGCTTCTACGTCTACTCTACTAAAGTCGTTCTTATCACGACATGAACTTGGAGATGGAAAAAAATCGGAAAAAGCCTTTCTTCTCTCAAGCGGTCATTCGGAGCATCGAGCAGCGTTGGAAGTAGGAGAACAGACCTTATTTTCTTCCAATCGTCGGATTCCATACTAATGTGTATCCTGCTCATCATCGTAAGTAGCACATTGAAATGTCCTCCATTTTGACGCATGATTCCTGACGTTCACAAAACTGAGCAGTCTTGTGTCACCTTTGCAACACCCACGCCTCTACAAAACCCATTACCTCATGCCCTCAATGCCTGAGCACTATGACACTTCATACGAAGGCTGGAACAGAAAAATTGAGAGCTTCTCCGAATTACTTCCAACCAGCCGCACTACACGGCTAGATTCGACACCACGGTCGCGGAAGTCCGTGCTTTAGTTAAACAATTTGCCACAGGGATAGCCGATATTCTTGTTAGCACACAAATGATTGCAAAAGGTAATACTTTCTCGTGACCTCTTTCTTAGTTAAGCGAAGACTCTCTGGTCTATATATCCCAGATTTTCGAGCAGCAGAACAGTCTTTCAACTGATTACCAATGTCACTGGGCTCAGGACGCACCCACCTTCCGAGAGAAGGTTCTTATCCAAACATTTCTTCTCAAACTCCGACTATATCTCATGCTTGGCACAAGATTTCCCAGCTTTCTGCAAGGAAGAATCTTAGGGAGAAAGTATGTAACTACTCCTCCGTTCACACGACTAATCCGCTGTATTTTGAAGAATGCTCGGATTATACTTTAAAGGAAACTCAACGTGTACACACACTGAAGTACACAAAATTTGGATTCTCGAAGCCTCTCTTATGGAAATATCTCCTTGATGGACATTTCAAAAGTAAAAGGCTTATTTCACCTATCGTTCTAATCAAACTCGTCAACATCACCTCGGTAGCGAATAACAGGTTCAAGGGCTTTAGCCGCTGTAAAATTGATCCTCTAAGAGTGCGTTACATTGTTGATGTGAATCCGTTACGACATTCCTTCCTGATACGTTACTGCTCGGCAAGCAACGAAACCAAAATATCTACTTCTTGTTCGGTAATTCAAAAGCATGTAAATTGGCTCGCAGTACCTTTACCTGTAGGAGGACAAGCGACTCCAACACGAATGCCATAACAACCTAATTTATTGATACAATTCCTGCTCGAATGAAGACGGTTGCACAAATCAGCGCTGCCATAGATTTTTGAGCAAAATAGTACACGAATACGACGTAATCGTGTTCTCACCAAGTTCTCCTTCTTATGAATTCGTATGCAACTTGTATAGATATTAACAAATAAGCAGGTGATTCCTTAGAAAGACTTACCATGAGTTCTTTGATCAAATCCTGCATTCCCTCGGCGATAACCAAGCTGCACCGCGGATCCAAAGCTTTACTGAGTAAGAGAGTACCGAATAAAATTTCATACCCTAACGGACACAAAATCCACCTTCCCAGCGTCTCCAAATAATCCACAACGCTTCATCAACTATCACTGAGCGTGATACTGATGGATGACATGCCACTATTTGCTCCAAAGAGCGAAAGACCCTTAAAGAATAAACAGAACAGACGGGGATAAATACTCGTTGAAAACCACGTGCTGACAAGCTCTAATAAAGTCGGATGATCTAATCATTATAGAAACTCTGATGCCACCCCGACAAAAAAACAGATGATTGAAACAGGATAATATGACCTGCTCGTCCCCATAGCATAATTCCGCTACGGAAGATAGATGCACAAATCGCAGTGTTCGCAGCCAAAACCACTTGGCAAATAAGAGCTTCTGGAGCTCGGCTGAAGTAGCGCTATTTGTTTATACCCATCTAACAGCGAGAAGAGCCTACAATGGCGCGAACCCTCCATAACCTAACTTTGCGCATGGCTTGTCTCTCAATAAAGCCGATAACAGCCTCAACAGCATGAACTAAAGCTATTGAACGAGAAGTCCGAAAATCATTAGTGATAAAAATCAATAGAAAGAGCTTCCTTCAAAAACCCATCCCTCATAGCTATATCATTCAATGATGCAGTCTTATTAGCTAAATAATCGTGCCAAAGCATTTGAACAGTAGTCAGGTTTCCCCGTCCCACAACATAGGGAATCGCTTCCTGATGGCGATAGAAATTTCAATAGTTACTGGTTTAGGAGTTTGGATATCATTTACTTCCCGAAACAGTTGGGAATATCGTGAATAGGCAGACAGCTCTTAACTCCACCAAATTGTACACGGGGTTGACGGAGATATGCGCTGCAATATTTCATGGGAGACGCCAACACCAAAGGGATGATCTGGCATTTTTCGACTCCTTCCATAATAATACGTCTCATTGGCCTCAAGGCTCACCGACTGCCCCAATCTTCACAAAACGACTGGTCGTCCTTTTAAGAATAACTCCCATGGCGATCTACATACCGCAAGTCGCCAGGTGACATACCAGTCTCTCATAACTTTCTATAAGATCCATGTCGAAGTCTTCCCAAATATCCTTTAAATAAGAGAAGTTCCTCGTGTCAGAACCAATTGTTACTCGGTTGATTAGACTTTAGTTTCTTCAGAAACAGTAACACTTCCATACTCTAAGGGCATGCCGTACACAAAGACTCATGTTTCGAACTATTCACGAGATAATAGTGATAACCGGACATTCTGTAGTTCCATATGCTTGACGCAGTGAACATGTGGAGAAAGTTCAAAGCTTGGATATAAAGAGTTTTAAGAAACATCTCACTCCAACAACAACGAACCGCAAGGAGGAAGCGCGGCCTCGCTTTGTCTTAGCGGCATTAGTAATATGAAAGCAGGCGTACTTGGCAAAGTGACCTTCCTTCATTCAATCATCTCGAACTATTTCTTCCCATACAAAGGATTATAGGCAATAACAGGTATCCCTATAGCAAAGGGAAACGGCGTACAAATTGAACCATACGCATGAAACGGGGGAAGGAAGGATATCATTGCATCGTCTTCTTTCGGAAAAGCAATCGAAACGGGCCGTTGGTTAAGC'..b'%+*6//+3\'3)+57./7-1<59\',$2-+(+(5-(.))%8/0.&(.43:/5<:;*,\'96&05)/\'\':4261.4*-<,3+2%$#$,#)4-2;.-)&*6/5//(&%*0(61*6)\'(&:/%07<0*,)8.+:0).+58-,*241);.25&+%),3*&6)(&(80,(8)5+%,:(;5/*&(0-5+,4\'\'-%%9.6.48++/(/01036(.+1/)-(.++,)991&1*1)*2%3\'+4)450)04./+3*+/&)$(0$.$/84/.492288&&&1*\'3;2:4989.,1,+&.&)&),&(,.*+5(\').*71/$**0+,,+.((*+:/)+(*0-+-:3/2&\'%\')\',-6,()\'\'(\'-.-,,-2/5%6001409.<6&,4&542(.2\')4+%2)$0(844\'2,4%-*,/2:892632&&%.&*$+/+)31.&,)-.6)0%.\'3.\'+/4\'&\')\'21(.\'++.*,0\':*31.$/.\'.+/.\'04,*#($&\'-&)+&-#\'(1-.,0%\'*,/3#,+\'*(/&&($1/23.5\'6./:24-5+*2+.1*&$&(\',%)4&)\'.)(2%+$&,+)\'1()4-5:9)#(0&\'+.)$$),0&+)84+-\'2/0*65(62.(+3,.--99&/3-</*(.538*,41(:)&261(/..)(&+4,1..6/,9.755,/8%()&#(%&046)/&4*.51:&/0*&\'$(22.0+))(..,)%*4+2\'%)(*\'54,10521514,)3+\'-1(-)234+\'\'.%\'.5..23:/2&+)22)-4/$+$1/+1/69)-:8<,,)92,,+5\'\'-&*6.,4-&#-.3,.&)-/02\'\'((\'((;...5.2%))*%/:;).*)))+%)3(&*$1&*+-.9<<5085.*1%\'8;01\'.32:0*:/,4*4/+\'$\'2).&1*/.1*+2&#+4---+/&\'.0+9+),,.\'\'&41+43\'*$+\'%-58.69,\'-&5..6\'($\'\'44,,30:/2<3)(&-&+7%\'\'*)+4\'),(60/*+&.65;288*45).15//8,,6)/*..1*,+)\'()\'-\'+.1*,8,3-9.$02-1,&+.\'*($/(+(&%%-(&*-\'3,+8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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_05_03.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_05_03.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,304 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_05_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_05_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,336 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_06_02.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_06_02.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,284 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_06_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_06_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,336 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_07_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_07_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,336 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b'%+*6//+3\'3)+57./7-1<59\',$2-+(+(5-(.))%8/0.&(.43:/5<:;*,\'96&05)/\'\':4261.4*-<,3+2%$#$,#)4-2;.-)&*6/5//(&%*0(61*6)\'(&:/%07<0*,)8.+:0).+58-,*241);.25&+%),3*&6)(&(80,(8)5+%,:(;5/*&(0-5+,4\'\'-%%9.6.48++/(/01036(.+1/)-(.++,)991&1*1)*2%3\'+4)450)04./+3*+/&)$(0$.$/84/.492288&&&1*\'3;2:4989.,1,+&.&)&),&(,.*+5(\').*71/$**0+,,+.((*+:/)+(*0-+-:3/2&\'%\')\',-6,()\'\'(\'-.-,,-2/5%6001409.<6&,4&542(.2\')4+%2)$0(844\'2,4%-*,/2:892632&&%.&*$+/+)31.&,)-.6)0%.\'3.\'+/4\'&\')\'21(.\'++.*,0\':*31.$/.\'.+/.\'04,*#($&\'-&)+&-#\'(1-.,0%\'*,/3#,+\'*(/&&($1/23.5\'6./:24-5+*2+.1*&$&(\',%)4&)\'.)(2%+$&,+)\'1()4-5:9)#(0&\'+.)$$),0&+)84+-\'2/0*65(62.(+3,.--99&/3-</*(.538*,41(:)&261(/..)(&+4,1..6/,9.755,/8%()&#(%&046)/&4*.51:&/0*&\'$(22.0+))(..,)%*4+2\'%)(*\'54,10521514,)3+\'-1(-)234+\'\'.%\'.5..23:/2&+)22)-4/$+$1/+1/69)-:8<,,)92,,+5\'\'-&*6.,4-&#-.3,.&)-/02\'\'((\'((;...5.2%))*%/:;).*)))+%)3(&*$1&*+-.9<<5085.*1%\'8;01\'.32:0*:/,4*4/+\'$\'2).&1*/.1*+2&#+4---+/&\'.0+9+),,.\'\'&41+43\'*$+\'%-58.69,\'-&5..6\'($\'\'44,,30:/2<3)(&-&+7%\'\'*)+4\'),(60/*+&.65;288*45).15//8,,6)/*..1*,+)\'()\'-\'+.1*,8,3-9.$02-1,&+.\'*($/(+(&%%-(&*-\'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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_08_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_08_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,336 @@\n+@9338f89c-9c8c-4211-6a74-39502715849d plasmid,-strand,2029-4838 length=2819 error-free_length=2928 read_identity=92.34%\n+ATCTGCAGTGATGGTCAGTATAAGCAATTTAATCGCGAATCGAGATCCAGTTGCTGAAAAAGAAGATCGAGTAGCGTAATATTTATCGATTACTTGCAGTTGAGCAACTCATCGGTTGGAAAAATCGTCAAAATGAAATAGCGATATATCTAGAACCTTAAGAGTTAGCCTTCAGAGCTAAACATTCCTATAGTTTGTTTATCCCAACTATCTAGAAAAGTTGAGGATAGAGCAAATAAAGTTCCCATGCTTTCAGATTTGCGCAGACAGCGGTCAAATAGTAGCAAGACGCAGATCGTTTGTTTATCAATAGGAAGGATCGTCTTCTAGTTGTGAGATAACTGGGAACAATAGACATGGATCGGTTTTCCTTCGGTATTACATTCGATCCAAAATTGATTAAATTCTCGCTATTTAAAAAGTATGGTAAATTATAGTAACTGCCGCTTCATCAAAGTTATCCACCGAGAAATCAGAAGTTTGAAAGACCTGGTCAATCTATTAGATATCTCCCAATTGGCTAAAATGGATGGTAGAAGTTAATAGGTCTTGATTTTCTTTCATTCTCATTACCATGCATTAAAGCTATCAAAGATTACTGACCGCAACGAATTACAAGGGGAACTACAAAGGGGTTATTTTATCCAGAGAATCAAATAGTTTTCAATTTGAAGGATGGATACCAAGAATCGTTTTGCAAAAACTGACGTTCTTAGGGGCTTATGGGTTAAGCGGTATAAAACATCCAGAAATAAGTATGAGTTTAGGTGGAAAAAAGCTGAACTGCTTTAGAAGCCTTATACCATCTACAGACTGATGTGCAGCCGCCCGCACAAAGGGTGTATTACGGCCGATGTGGACTGGACTACTGTCCATGCCATTCCCAGTGGCTAGACTAGAACTCGATGGACTAATTGGAACACAAATAGTAGACCGTTACCAACTCTTTCTCCGATCATTAGGATTTACGAATGGGAAGGTTTAACTGACGAGAACATGTTACGGAAGAAATCGTCTGATGGGATTTGCGTCTAGGTCCCACATGCTAGGAATTGGTCGCAATTAGTCTGCCCGAAACTCGCCTGGTACGTTTTCGCCTCCGAAGCAGTTCGTAGTGACCATGTCCCTATCTTGGTAGATCAAATGAATCCTACTTGTCAAGCCTGCAAATGTATATCCAAAAAATAAAAATGCGTTTCCAAATGCATCAAGAGTATGCTTACACATTTATCGACTGGGTGATTACAGCAGCTGCGAAAAAGAGACGAAAATTACTAAGGGTAATTCTTGGCCAGAAAACTTGTTATTAAACGTTAACGTTAAAGTCTTGCATATATTTTTAAGGATGAATCGGTACATCTGTACAAGGAACTGGAAAAATCGTTAGCTATCGATAAAATAGAAATCATTCAACATGGTTATCTAGAAGAAAACGATATTGAATTTCTGGATTCTTCTAAACCTCTCTAAAAAGAATTCTAATCTAAATAAAAAGCGCTTTGAAGAAATAACTAAGAAATCTAAAGAAATGGAACAATTAGGAACAAGAATCTATTAATTAATAACAACTGAAACTAAAAGCCTAATTTATTTAGACTCCAAAATAAAAAACGGTTTAAATGGATTCTGGTTTTTATTTGTATAACACTGAAAACTGCATCTTCGCTGATAATATCGAGTTGGGCAAATGACAGAGCCGCTCAAGGACCAGCAAATAAATCCTTGGGACAACATCACCGTCGCAGCCAAAATGACAGCTTCTGATGGAATATCTTTAACAGTCTCAATAATTCATCAACCAATGCTTCTATTACGAATTGGTTTTGGATGCGAAAAAGCTTACAGCTTATTCTAGAAAAGTTGGATCAAATTCTTGATGGAATTGCTGATACTGTGTTGATATCCAAGATATTTTAGACAAAAACAGACCCTTCCTCTAGGTTTGTTGAAAGCTTTTAACAACTTTCCAATCACTAAGTAAAATTCAATGCAACGGGTTATTCTCCCAGTAGCATTGAAACTTTATTAGGAGGAACTGAAATAGGAAAATTCACAGTCCACCCAAAAGCTCTGGGGTATGTTATTAGTCTCAGCAGATAATATTGCATCAAGAATGGAAGGCAACGTTGTTCCTAGCTTTGGTACGAGAAGGTGATCCAGCCCTGCGCGATTAGTTATAGGATACTCATCAGGCGTTCCTAATTTGTAGTCTAAGAACCAGCATTACTAATACAGGTGACTCCAACAACGTATTCATTACGTGTAGGCGGTTTAGAAAGCGGTGTGGTATGGGTTGTGCCCTTTCTAATGGCAATGATATTTTAGGAATATAAATACTCTAATGTATCTTTTTGGAGTAATACCTCGAAACAAACGCTAAACAATTTTTATTTAGTTTTTCTTATAGGTTTTATATTTAGAGAAAACAGTTCGATTACGGGGTTTGTTATGCAAAATAAAGAAAAGTGAGGACGATTTTGTTTAAATTGTTTAAAGATGTGAAAAAAGATTTCCCCGAATTAGACCTAAAATACGAGTAAACAAGGAGAAGTAACTTTCTTAAATTCTCCCTTAGAACTCTACCATAAAAGTGTCTCCTAATTCTAGGACTGCTTCAACAAATAGAAAACTCTTTAAGGATTATTCCCAGACTCTCCTGTTCTTGAAAATTAGAGGATAGCAGTTTAAAGCTAAAAAGGCTTTGATTATGCTTATCTTTGTCTAGAAAAGACATGTTTTCCAAGGTGAATAGACAACACTCTAACGTTGGAGTTGATTTGCACCTTGAGTTTTTGCTCTTTTAAGGAGGACTGAAAAAA\n++\n+:54'%,,0048-,-1:'-7;90-%(/8,+*1/6547/,096&%+31&.1-3(*4-6'48),1,*<543:152(*,9;/%*8.-*$868&,/.1/0/,-9125/'2)7*-5/0&4&$/;8'1<1:8*.391.26/2:.<)5155-,4-8./-4).-4/0408.&+())&1*/42&5/0515-+6:/.1+023*%-1-7:+2;'-2/7/,)040:8-4(167+++35,%45).1(<235.41(.4*1./'6,<.$1,39*.)),06#2/.)%4/50-*4823*6)0*2.'64-+)2&($)2)()8%&27+0+7,93;2-9;*5-.40))7+*-.('/03;464*8+,'-,*'+05900-,870&;0+<22*6-<%9++.5/)41.%&,<(+*/*0%(+$0,+0*'8.403,,-'.'1),(22//6/0/'6409*.20+09.;7/.1'').15)%2&:'(%+/47;380+))+.-+&+,64+4)2,$'&)0.(.:158-.28*42)(,.1/85+708-/(**+,,&11&4-(:%-,.526480)52*),,4--.+%':2+5.,,:05(*/&-(/1.,,,.,+6*&%+//*/*0(9)-34/554&*:2977(--6:5+6642314*/&9&1$2(3*9)5-+3*/:437%336(54593:722,*--84+78;(%/(.*67/*.,.368)+//6,6-)*63'+*+;)*3<,++%1'6/),.'.6)11.,1(7:)%,.'1.4)-12/,5+,5*04-<+/196030+5/10/:0-+-244:.41382008-450816-.4.5/,77+-*3'8+%**'')/+../)(3(-$*+'35&%';+*.1&(31+0,).3$$&)((+*%**:.5&*.(5+/3(18((::00,4:,4.')52)4//&'&0+3)745*)28061<7&,0()*))//44;/*91768'/31200,6&4/)0;-1372,14/.1:;/,)-300203(/8+++.+(:6;0*):09,0;544+8),0++/4/2.6:)4-+/.'(8..003'5-36681,-.2*28"..b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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_09_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_09_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b'@@ -0,0 +1,336 @@\n+@915048ed-cfdf-2e72-cae2-7cd225d95427 chromosome,-strand,127398-149788 length=21560 error-free_length=22548 read_identity=87.12%\n+ATCAGAACAATGTATTCTTTGGGCAAAATGCAGAGCGTACAATAAGCTCAAAGCGCGATAGCCACAGCAAATCGCTGTTCTGCTGCGTAAACTACTCAAAACGACCAAAGCCTCTCACTCTGACGCTGATGAAAAAAACGGTCTCCAAAAACTTCGGATGCCTTAGTAAAACAAAAATTCATTCGCATTGTCGGTAAACGGAATCTGGAAATCAGGGCAACAACTCATTATTTCCTCCGCCCCCATCTCATCAGACAACTAGTGCAGTCCAATGCTCTCGCAATCACTCGTTGGAACAATTTCAAACCTGTCTGCTATTCGGGTGACAGGGAGCGGGAAACTGAAGTGTATCTGCAGATCATTCAGCAAAGCTAGAGCTTTAGGAAAGGCGTGATTCTTCTTGTCCCTGAGGTAGCTTTTACCATTCAAACGCTTTCCTTTTTTAATCGCGCTTAGTTCAAAGTGGGCGTTTTACACTACAAAGTTAGAGTGACGGTGCGTACAAGACCTGGCACAAGGACGTCCGAGGCCTAATTAACATCATTATAAGGCCCTCGTCCGGCCATTTTTCTGTCTATACAAAACTTAGGATCATTATTGCGGATGAAGAGCTTACGACAGCGCCTATAAACAAAAAGCGGTGCCTCGCTTTTTATCCAAGCTCGGATATGGCTGTCATGCGAGGGGAAAAATGACCAGTGCTACAGTCATCCCTGGGGAGTGCCACTCTCAAGTTTAGAAAGTTACGATGCCTTATTCGAATAATACACGCTTTCGTTCTCTAGAAAAGAGCTTCTACGTCTACTCTACTAAAGTCGTTCTTATCACGACATGAACTTGGAGATGGAAAAAAATCGGAAAAAGCCTTTCTTCTCTCAAGCGGTCATTCGGAGCATCGAGCAGCGTTGGAAGTAGGAGAACAGACCTTATTTTCTTCCAATCGTCGGATTCCATACTAATGTGTATCCTGCTCATCATCGTAAGTAGCACATTGAAATGTCCTCCATTTTGACGCATGATTCCTGACGTTCACAAAACTGAGCAGTCTTGTGTCACCTTTGCAACACCCACGCCTCTACAAAACCCATTACCTCATGCCCTCAATGCCTGAGCACTATGACACTTCATACGAAGGCTGGAACAGAAAAATTGAGAGCTTCTCCGAATTACTTCCAACCAGCCGCACTACACGGCTAGATTCGACACCACGGTCGCGGAAGTCCGTGCTTTAGTTAAACAATTTGCCACAGGGATAGCCGATATTCTTGTTAGCACACAAATGATTGCAAAAGGTAATACTTTCTCGTGACCTCTTTCTTAGTTAAGCGAAGACTCTCTGGTCTATATATCCCAGATTTTCGAGCAGCAGAACAGTCTTTCAACTGATTACCAATGTCACTGGGCTCAGGACGCACCCACCTTCCGAGAGAAGGTTCTTATCCAAACATTTCTTCTCAAACTCCGACTATATCTCATGCTTGGCACAAGATTTCCCAGCTTTCTGCAAGGAAGAATCTTAGGGAGAAAGTATGTAACTACTCCTCCGTTCACACGACTAATCCGCTGTATTTTGAAGAATGCTCGGATTATACTTTAAAGGAAACTCAACGTGTACACACACTGAAGTACACAAAATTTGGATTCTCGAAGCCTCTCTTATGGAAATATCTCCTTGATGGACATTTCAAAAGTAAAAGGCTTATTTCACCTATCGTTCTAATCAAACTCGTCAACATCACCTCGGTAGCGAATAACAGGTTCAAGGGCTTTAGCCGCTGTAAAATTGATCCTCTAAGAGTGCGTTACATTGTTGATGTGAATCCGTTACGACATTCCTTCCTGATACGTTACTGCTCGGCAAGCAACGAAACCAAAATATCTACTTCTTGTTCGGTAATTCAAAAGCATGTAAATTGGCTCGCAGTACCTTTACCTGTAGGAGGACAAGCGACTCCAACACGAATGCCATAACAACCTAATTTATTGATACAATTCCTGCTCGAATGAAGACGGTTGCACAAATCAGCGCTGCCATAGATTTTTGAGCAAAATAGTACACGAATACGACGTAATCGTGTTCTCACCAAGTTCTCCTTCTTATGAATTCGTATGCAACTTGTATAGATATTAACAAATAAGCAGGTGATTCCTTAGAAAGACTTACCATGAGTTCTTTGATCAAATCCTGCATTCCCTCGGCGATAACCAAGCTGCACCGCGGATCCAAAGCTTTACTGAGTAAGAGAGTACCGAATAAAATTTCATACCCTAACGGACACAAAATCCACCTTCCCAGCGTCTCCAAATAATCCACAACGCTTCATCAACTATCACTGAGCGTGATACTGATGGATGACATGCCACTATTTGCTCCAAAGAGCGAAAGACCCTTAAAGAATAAACAGAACAGACGGGGATAAATACTCGTTGAAAACCACGTGCTGACAAGCTCTAATAAAGTCGGATGATCTAATCATTATAGAAACTCTGATGCCACCCCGACAAAAAAACAGATGATTGAAACAGGATAATATGACCTGCTCGTCCCCATAGCATAATTCCGCTACGGAAGATAGATGCACAAATCGCAGTGTTCGCAGCCAAAACCACTTGGCAAATAAGAGCTTCTGGAGCTCGGCTGAAGTAGCGCTATTTGTTTATACCCATCTAACAGCGAGAAGAGCCTACAATGGCGCGAACCCTCCATAACCTAACTTTGCGCATGGCTTGTCTCTCAATAAAGCCGATAACAGCCTCAACAGCATGAACTAAAGCTATTGAACGAGAAGTCCGAAAATCATTAGTGATAAAAATCAATAGAAAGAGCTTCCTTCAAAAACCCATCCCTCATAGCTATATCATTCAATGATGCAGTCTTATTAGCTAAATAATCGTGCCAAAGCATTTGAACAGTAGTCAGGTTTCCCCGTCCCACAACATAGGGAATCGCTTCCTGATGGCGATAGAAATTTCAATAGTTACTGGTTTAGGAGTTTGGATATCATTTACTTCCCGAAACAGTTGGGAATATCGTGAATAGGCAGACAGCTCTTAACTCCACCAAATTGTACACGGGGTTGACGGAGATATGCGCTGCAATATTTCATGGGAGACGCCAACACCAAAGGGATGATCTGGCATTTTTCGACTCCTTCCATAATAATACGTCTCATTGGCCTCAAGGCTCACCGACTGCCCCAATCTTCACAAAACGACTGGTCGTCCTTTTAAGAATAACTCCCATGGCGATCTACATACCGCAAGTCGCCAGGTGACATACCAGTCTCTCATAACTTTCTATAAGATCCATGTCGAAGTCTTCCCAAATATCCTTTAAATAAGAGAAGTTCCTCGTGTCAGAACCAATTGTTACTCGGTTGATTAGACTTTAGTTTCTTCAGAAACAGTAACACTTCCATACTCTAAGGGCATGCCGTACACAAAGACTCATGTTTCGAACTATTCACGAGATAATAGTGATAACCGGACATTCTGTAGTTCCATATGCTTGACGCAGTGAACATGTGGAGAAAGTTCAAAGCTTGGATATAAAGAGTTTTAAGAAACATCTCACTCCAACAACAACGAACCGCAAGGAGGAAGCGCGGCCTCGCTTTGTCTTAGCGGCATTAGTAATATGAAAGCAGGCGTACTTGGCAAAGTGACCTTCCTTCATTCAATCATCTCGAACTATTTCTTCCCATACAAAGGATTATAGGCAATAACAGGTATCCCTATAGCAAAGGGAAACGGCGTACAAATTGAACCATACGCATGAAACGGGGGAAGGAAGGATATCATTGCATCGTCTTCTTTCGGAAAAGCAATCGAAACGGGCCGTTGGTTAAGC'..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+7,3+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_10_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_10_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,336 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_11_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_11_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,336 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed test-data/sample_12_04.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sample_12_04.fastq Thu Feb 11 19:25:20 2021 +0000 |
| b |
| b"@@ -0,0 +1,336 @@\n+@241c741a-22c0-9542-160b-a69d32222440 chromosome,-strand,620368-624117 length=3469 error-free_length=3666 read_identity=84.69%\n+ACGGCTATGAATTTCCCCTATAAATAGCATTTCCAGAGCGCCCTAGCGTATGCAAAGTTTAGTATTGGCGTTTGCATAGTCTCTGACATCTTGTTGTGCTACAGAAACTTTGCAGAGAACAGTTCTTGATAAGAAGAGACGGCTTGTCTTCTTTTTAAAAGCATAGGATCTTGAAGCAAGGTAGGATAGAATCTCGATATAAAGCATGTTTGATGCATTCGGCTTATTCCTTGATGATAGTTCTTTTCTGAGGAAGAAAATTTTTCTAGGGCAGATCCATACAGCTTTTTGGGAGATAAAAGAGCCGATGCGATTATATGATTTAAGTTATGCCATTCTCTCCGTGTTACTTGCTCGATTAATGTGATTATCACGGGCTGTATTAGGACTGCTTGACCGAATCGAAGGATGGCGCAGACACCTCGGGATAGAGTATCGCGTCTTGGTTTCTTCTCTTCAGGAATGGTAAGTGTTCTGCGGAATATCCTGGTGAAGCGACCAAAGTCCTAATAGAGGAGGTAGGATAGAGCATTGAACTTATTATTTGGTTATAAAAATGAGGAAGTCCGGTAGAGAACGAAGCAACAGCAGGGTTTTGTAAGAATCCAACTAGTGAATGGGGGGTGACGGGGAGTCGGTAACTGAGTTCGATATAGTGGGTACAACGATGTGGGAAGCAGGTTCACTGAAGTTAAATCAGAAGCATAGCCTCAACAGCGGCAAACAGCTCGAATGGCTACACAAGGATCGTGGCGTCGATGATTGGGGTGCGGTAACGATCGGTGTATCTTTAAACGGAGGGCCAGGTTTTTATAGACTTGAAGCTGGAGTTTTGAAGGCTACACGACCTTCAAAGGCTGCCCAATATAATCACCCTAAAGCTCCCTCCCAGCGATTGCTTTTTGAAACGCGCCACTTCATCAGCAATAAATGCATCTAGATGAGGCGGAGCCTGTCATTTGTGATGAAGAAACCGGCTCTATTCAAATCCTTTAGCCGACAAGGATGCTCGTCTAGCTGCAACTAAAAAGAGCTGGAAGCTCCAAAACACAGGCTTCGCCCTGGACCTATAGGTAAAGGAAATTGATAAAAGAGACTACACGCAGAGTCGTCAGGATTAAGCCAGAGGGAGATTCTGAAGTTCTTCTTGGAAGGAGTGTGTAGAAGGAGGGTATACCAGTTGTATTGGCGGTCAGGAAGTTTGGGATAATTGTTTACCTCTCCTAGGTGCTGAAGATGCAGAAAGGAATGCGAGTGTTTCGATTCTTGAGATAAAGGATCTTTTTTAGCACATCCACGCAACGACTTACCTCGCGCGGTCTCTCTAGCGAGAGGCGCGTCCTCATCCACGGTTGTCTGCAAAACATTATTCCTTCGCGAGACAAATTGTGCGTGCCCCGGTCGGTAACAGTGTTATAGCTGTTCATAAGAAGAGCTGGATACATCCTTGTTCCAATAAGAAGAGAGATTGGGTTCTGTTGTTTTGTTTGTGAAGCTCCAGATAAATGGGTGACTGAAGATCGTCTTGACGAAAAAGTATGAGTTGGCACAGTCTCTTCTAACCATAGCGGGAAAAATCTTCTGGTGATAAGAGAACCGGACACCCTCAATTACGACCTATAGCAGGGCCATGGGATTCTCTCCCGTAGTGATAGAAATGGAATATTATTGATTATGCTAGAGACTCTTATTGCTCAAAAAACCAAGTAAAAACTTTTGACAATCTCATCGCGGCTCCAAGGGAAGTCTCTGCTCGTAAAAGAAGGCATACGATGTGAGGATCGTAGTTTGTCTAATCGTTGAGACAAAAGCATCATCTAATGATGGAGCAACAAGTCTTCAGGAATAATCTATGTTTGTAGGCGCTGACATAGTGTAGCGATGAGGGTTGGTAAGACTAAGAGTACATGTTCTCCCCAAAATATGGGCGTAGATGGGTTCAACTAATAGAAGTACGACCTCCTAAAGATACGAGCTAGGTACAGGCTACCCTGGTAGGGCGGGAATTCTTCTCTTGCAAAAAACGCTTCTTTCTCCCATAACGATTAGATAATTTTAGGAATCTCATGGAAACGATCCGAAAAGGTGATCTTATAAAGGCAGCGATAGAAGTTGGATAAAATGTTGACCAAAGCAAAGGGTTTTACTACAAGGAAGACCGCAAAGGAAAATCTGTTGGTAGTGTCGACGTTGCATGTAGTTTCTGCGCTGCAATCACGAAATATGGAAACTCTTATTTATACACTGTGTGTTACAGAGGAGAGGTGTCGGAAGGCAGACTCCATCTACAACGAGAGCCTAGCAATGAGCCTGATCTCATTATGAAGAATCAACAACCGCACCATGTAAACCGCGAAGGGCTTTATATATAGACGTCACGGTAGGGTGGACCCGAACCACCACATTTTTCGGTTCATGGGCATGGCTTCAATGCGGTGCTTTGCTTTGTCCTTTGTCCCAGCATTATACAAAGCGCGATGGATTTTTGCAAAGCGCAGGGGATAGCAAGATGGGTAAATGCACTCTATGAATGGGATCCATATCAAATTTCACCTCCGGAAAAGAAGAGGGTACATTTCGGATATGATGTTTTCCACATAAGAATATGGGCTCCAAGTTGTTTAACAAAAGAAGAGAACTGTCCCCTTGAGAGTCTTAGAAGAAGATTACGGAGAATGGTTGGATTGAAGAGTAGACCAGGGAAGCTAACAAAGCAGCGAACTATAGTCTCCAGGCACAGAATAAAAAGCTTTCTAATGATTGTCCTCGAGGGAAAGTTAAAGATTCTGGTCCTTAAGAAGGAGTGTTTAAAATGTAGCCAAATCTAAGGTCGGATCAAATAAGGAGCGTTCTGGATTTTCGACAAGAGAAGTATGGAATGGCTGCGTGATTGCTTCAATGCTGATGCGTATTGGGAAATCTTCTCAAGGATGATTAACGTGGCCAGGGGATAATGGACCGTGATGGTAAAGGGAATAGAAGAAGATGTTTGAGCGCAAATGTGCGGCAAGCTGTTTTAAGCCCGATAAGAGCGCTATAGGACATCGTTGAGTGTGTGGGATCTGTGATCAAAAGTCGGGTGGGATGAAGTAGAAGAGGCGGTTGGGAATCGAAGGCGATGCAGAATTCCATATGGAAATAGCGTGGTGACATTGATAATCGGGATTCCCAGGAATGTAAGAATCTCCTTCTTTAACGTGAGCTCCCATTTTCTCAAGGCTGTGCGCTTGGGGAATCGGGAGAGAAGAGACAGTTCTCTATCGATAGAGTCCCCTTTGGATAAGGAGGCAAAAGGATCGCGCGTAAGAATGTGATTTTGCTGGAGGAACAGCAAGTTTCTCATAAAATTGAGGGGAGAAATAAGGAGGTCGGTTCGAAGACCGTATGTCTATTTTTCTAAAAAGGTTAAAAATGGATAGCAATGTGATCATTCGGAAGAGTTTTTATGATATTTAAGATCATCGGGGAA\n++\n+7'%$+#'%9)$06*)10++-.<++15*-4+3/-520+59'.,&.+((5-1+,/(+(4/*8-(/(/2-03*'7*3&+7'*272/4145.,///&7,/-&0*6),(+5/,)3.4/652;-18*;,*&(-2+*031,.0.205(+',+:.-'4-57/1)-4**(3376*1,.4-(6)*22*(/;9:0/#(+$8)610'';*,+,:+#<5*.-;<)0.7-1+0%1/)%),,1)*((%&,5*%(-,9)+2+.0(:,1)4(:0'11**$$53;+1*2%;1/40,7*.-53,:'***&+4:1545296*5-22,;$22.)3&$-,*1)390+7-4/.+8.6.1&'%&),+())3.34,'$.,+)5/&)(%421,+'&;*)/&&3+"..b"34)'2-22421/-7+&('&)979&17&))('((7;'1'%/4:)+':6,1-22'('*,/6.71&-1056631<'1'%38*)/:0/09/,1+62(32&),80)2/,,171'&0(37310*0*1/6/+;&+*27..:11('6<',*&-.5,2'6/+.*)4*1-6302861,(046+)-,;50;/**5:1-)-*-)&$,&(5684)85-30.-05',*26.952/;12)4).18-</3<795+',)----0/*64.269-5)%1051,7')/2+766,7);:+0/3,(.%(+8*(7;+571)7;6+/5&0/&:.-16$+*0#'8/&'&'''(0003::928191*;*0-0+;-*::6%+/9.5&<*&++826;,:91,/0/2680/4,6*++,0*0/0..$(1*-7.-.7+*,-)5)*9:014:*58-75/43<)0//85+<.,&%'2):,6/1.3173/-:++2-.+94,.7$4&8+*&',,'/*.%,/64;+)(9-6,-42-1+(51620-,1/-24/))././((:,-8,0<0;31.;202-,9*,/,56,0(99*1+0.1&0/3(4.'.,.')'0/1-/,,*<(60:2010(521:/1):-4;(-7%+%(.'/--./*+6-7-&1'$84.-322++0/+)-,:/1,.6-*3+54557)<412/2(%*0)++2)4)7',%+'-'-2270:)(/'2(+)-).526-315:&5,+-,0,6.'13-;2.05/%&648..**857+-.)/,)0;)7/+))/$&./&'')167,)712,0156.(5,./$/'().(-8<3*3,631-+*3:638;1&3/358/4.,-%320*-1.3'/176/);),.4'4)+-;+)/3)-<531+').(2-9/,.(..++,(*+21'/,8+-2+:9);4+6'.8+8:++:..%1))-,0--41$6*8+45*6901.-,9/)26,1+)'19+0%&)+..7$-10'&.30*4,,76./).(0-.&1*07,/8((+))<0-1+,21((&%'/**'++8.50+)2+)+17$11+,/('%18530844071-<314)-5/2)5.:)1.1'(1%&%.10,1&.2.,*3,55.(+-.2*/6.,;48,77,.45/57151.1-501)&(/)+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|
| b |
| diff -r 000000000000 -r 85658cabbbed trycycler.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/trycycler.py Thu Feb 11 19:25:20 2021 +0000 |
| [ |
| @@ -0,0 +1,40 @@ +#!/usr/bin/env python3 + +from os import path, walk +from sys import argv + + +def cluster(output_folder): + counter = 1 + for root, dir, files in walk(output_folder): + if root.endswith('1_contigs'): + output_path = path.join(output_folder, f"cluster_0{counter}.fasta") + with open(output_path, "a") as out_cluster: + for fasta in files: + fasta_path = path.join(root, fasta) + fasta = open(fasta_path).read() + out_cluster.write(fasta) + counter += 1 + + +def reconcile(input_file): + number_cluster = [x for x in input_file[-1:0:-1] if x.isdigit()][0] + full_path = f"selected_cluster/cluster_0{number_cluster}/1_contigs/" + with open(input_file) as tmp: + for line in tmp: + if ">" in line: + filename = line[1:].strip() + output_fasta = f"{full_path}{filename}.fasta" + with open(output_fasta, "a") as handle: + handle.write(line) + + +def main(): + if argv[1] == "cluster": + cluster(argv[2]) + if argv[1] == "reconcile": + reconcile(argv[2]) + + +if __name__ == "__main__": + main() |
| b |
| diff -r 000000000000 -r 85658cabbbed trycycler_subsample.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/trycycler_subsample.xml Thu Feb 11 19:25:20 2021 +0000 |
| [ |
| b"@@ -0,0 +1,158 @@\n+<tool id='trycycler_subsample' name='Trycycler subsample' version='@TOOL_VERSION@' profile='21.01'>\n+ <description>make a maximally-independent read subsets of an appropiate depth for your genome</description>\n+ <macros>\n+ <import>macros.xml</import>\n+ </macros>\n+ <expand macro='edam_ontology'/>\n+ <expand macro='requirements'/>\n+ <version_command>trycycler --version</version_command>\n+ <command detect_errors='exit_code'><![CDATA[\n+ mkdir -p output_subsamples &&\n+ trycycler subsample\n+ --reads '${reads}'\n+ --count $count\n+ #if $option.genome == 'true'\n+ --genome_size $option.genome_size\n+ #end if\n+ --min_read_depth $min_read_depth\n+ --threads \\${GALAXY_SLOTS:-2}\n+ --out_dir output_subsamples\n+ ]]></command>\n+ <inputs>\n+ <param name='reads' type='data' \n+ format='fastq,fastq.gz' \n+ label='Long-read dataset' help='--reads' />\n+ <param argument='--count' type='integer' \n+ min='2' max='20' \n+ value='12' label='Number of subsampled reads set to output' \n+ help='The number of subsamples reads to make maximally-independent read subsets. The default is 12, a good number for most cases.' />\n+ <conditional name='option'>\n+ <param name='genome' type='select' \n+ label='Provide an estimated genomoe size'\n+ help='If you do not provide this, Trycycler subsample will run miniasm to quickly assemble your read set to get a size. This value is used to calculate read depths and does not need to be exact, e.g. 10% error is fine.' >\n+ <option value='true'>Provide estimeted genome size</option>\n+ <option value='false'>Run miniasm for estimating genome size</option>\n+ </param>\n+ <when value='false'/>\n+ <when value='true'>\n+ <param argument='--genome_size' type='integer' \n+ min='10000' max='15000000' \n+ value='30000' label='Estimated total genome size' \n+ help='An estimate of the isolate total genome size.' />\n+ </when>\n+ </conditional>\n+ <param argument='--min_read_depth' type='integer' min='15' max='120' \n+ value='25' \n+ label='Minimum subset read depth' \n+ help='This is the minimum allowed read depth and also controls the subsampled depths. If is not provided, Trycycle decides what read depth each subset will be.' />\n+ </inputs>\n+ <outputs>\n+ <collection name='subsamples_fastq' type='list'>\n+ <discover_datasets pattern='__designation_and_ext__' format='fastq' directory='output_subsamples' />\n+ </collection>\n+ </outputs>\n+ <tests>\n+ <test>\n+ <param name='reads' value='reads.fastq.gz'/>\n+ <conditional name='option'>\n+ <param name='genome' value='true'/>\n+ <param name='genome_size' value='10000'/>\n+ </conditional>\n+ <param name='min_read_depth' value='20'/>\n+ <param name='count' value='4'/>\n+ <output_collection name='subsamples_fastq' type='list' count='4'>\n+ <element name='sample_01' file='sample_01_01.fastq' ftype='fastq'/>\n+ <element name='sample_02' file='sample_02_01.fastq' ftype='fastq'/>\n+ <element name='sample_03' file='sample_03_01.fastq' ftype='fastq'/>\n+ <element name='sample_04' file='sample_04_01.fastq' ftype='fastq'/>\n+ </output_collection>\n+ </test>\n+ <test>\n+ <param name='reads' value='reads.fastq.gz'/>\n+ <conditional name='option'>\n+ <param name='genome' value='true'/>\n+ <param name='genome_size' value='10000'/>\n+ </conditional>\n+ <param name='min_read_depth' value='22'/>"..b"ile='sample_03_02.fastq' ftype='fastq'/>\n+ <element name='sample_04' file='sample_04_02.fastq' ftype='fastq'/>\n+ <element name='sample_05' file='sample_05_02.fastq' ftype='fastq'/>\n+ <element name='sample_06' file='sample_06_02.fastq' ftype='fastq'/>\n+ </output_collection>\n+ </test>\n+ <test>\n+ <param name='reads' value='reads.fastq.gz'/>\n+ <conditional name='option'>\n+ <param name='genome' value='true'/>\n+ <param name='genome_size' value='10000'/>\n+ </conditional>\n+ <param name='min_read_depth' value='25'/>\n+ <param name='count' value='5'/>\n+ <output_collection name='subsamples_fastq' type='list' count='5'>\n+ <element name='sample_01' file='sample_01_03.fastq' ftype='fastq'/>\n+ <element name='sample_02' file='sample_02_03.fastq' ftype='fastq'/>\n+ <element name='sample_03' file='sample_03_03.fastq' ftype='fastq'/>\n+ <element name='sample_04' file='sample_04_03.fastq' ftype='fastq'/>\n+ <element name='sample_05' file='sample_05_03.fastq' ftype='fastq'/>\n+ </output_collection>\n+ </test>\n+ <test>\n+ <param name='reads' value='reads.fastq.gz'/>\n+ <conditional name='option'>\n+ <param name='genome' value='true'/>\n+ <param name='genome_size' value='10000'/>\n+ </conditional>\n+ <param name='min_read_depth' value='30'/>\n+ <param name='count' value='12'/>\n+ <output_collection name='subsamples_fastq' type='list' count='12'>\n+ <element name='sample_01' file='sample_01_04.fastq' ftype='fastq'/>\n+ <element name='sample_02' file='sample_02_04.fastq' ftype='fastq'/>\n+ <element name='sample_03' file='sample_03_04.fastq' ftype='fastq'/>\n+ <element name='sample_04' file='sample_04_04.fastq' ftype='fastq'/>\n+ <element name='sample_05' file='sample_05_04.fastq' ftype='fastq'/>\n+ <element name='sample_06' file='sample_06_04.fastq' ftype='fastq'/>\n+ <element name='sample_07' file='sample_07_04.fastq' ftype='fastq'/>\n+ <element name='sample_08' file='sample_08_04.fastq' ftype='fastq'/>\n+ <element name='sample_09' file='sample_09_04.fastq' ftype='fastq'/>\n+ <element name='sample_10' file='sample_10_04.fastq' ftype='fastq'/>\n+ <element name='sample_11' file='sample_11_04.fastq' ftype='fastq'/>\n+ <element name='sample_12' file='sample_12_04.fastq' ftype='fastq'/>\n+ </output_collection>\n+ </test> \n+ </tests>\n+ <help><![CDATA[\n+.. class:: infomark\n+\n+**Purpose**\n+ \n+The *Trycycler subsample* tool tries to make maximally-independent read subsets of an appropriate depth for your genome. The goal is to use each subsample for generating varios assemblies by using different assemblers. It will also be handy to know the approximate size of your genome. If you're assembling something novel (i.e. you don't know the genome size), you could do a quick initial assembly at this point to get an estimate.\n+\n+----\n+ \n+.. class:: infomark\n+ \n+**Input**\n+\n+This tool requires a long-read dataset. Ideally your reads should have a coverage of at least 100x.\n+\n+\n+----\n+ \n+.. class:: infomark\n+ \n+**Output**\n+ \n+The result is a number of subsampled read sets, whose number is determined by the *count* parameter. \n+\n+---- \n+ \n+.. class:: infomark\n+\n+@PIPELINE@\n+ ]]></help>\n+ <expand macro='citations'/>\n+</tool>\n" |