Repository 'freebayes'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/freebayes

Changeset 39:85dc96ebc770 (2025-06-10)
Previous changeset 38:e698621cca1f (2025-05-07) Next changeset 40:0d8581534009 (2025-08-05)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freebayes commit c02672d4d8da0419efa4a13290ba628b4eee8304
modified:
freebayes.xml
leftalign.xml
macros.xml
b
diff -r e698621cca1f -r 85dc96ebc770 freebayes.xml
--- a/freebayes.xml Wed May 07 05:35:17 2025 +0000
+++ b/freebayes.xml Tue Jun 10 07:59:51 2025 +0000
[
@@ -1,4 +1,4 @@
-<tool id="freebayes" name="FreeBayes" version="@TOOL_VERSION@+galaxy1">
+<tool id="freebayes" name="FreeBayes" version="@TOOL_VERSION@+galaxy0">
     <description>bayesian genetic variant detector</description>
     <xrefs>
         <xref type="bio.tools">freebayes</xref>
@@ -8,7 +8,7 @@
     </macros>
     <expand macro="requirements">
         <requirement type="package" version="5.3.1">gawk</requirement>
-        <requirement type="package" version="20250222">parallel</requirement>
+        <requirement type="package" version="20250422">parallel</requirement>
     </expand>
     <expand macro="version_command" />
     <command detect_errors="exit_code"><![CDATA[
b
diff -r e698621cca1f -r 85dc96ebc770 leftalign.xml
--- a/leftalign.xml Wed May 07 05:35:17 2025 +0000
+++ b/leftalign.xml Tue Jun 10 07:59:51 2025 +0000
b
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="bamleftalign" name="BamLeftAlign" version="@TOOL_VERSION@+galaxy1">
+<tool id="bamleftalign" name="BamLeftAlign" version="@TOOL_VERSION@+galaxy0">
     <description> indels in BAM datasets</description>
     <xrefs>
         <xref type="bio.tools">freebayes</xref>
b
diff -r e698621cca1f -r 85dc96ebc770 macros.xml
--- a/macros.xml Wed May 07 05:35:17 2025 +0000
+++ b/macros.xml Tue Jun 10 07:59:51 2025 +0000
b
@@ -1,9 +1,9 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.3.9</token>
+    <token name="@TOOL_VERSION@">1.3.10</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">freebayes</requirement>
-            <requirement type="package" version="1.21">samtools</requirement>
+            <requirement type="package" version="1.22">samtools</requirement>
             <yield />
         </requirements>
     </xml>