Repository 'cnvkit_segmetrics'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_segmetrics

Changeset 2:86392285203a (2024-12-14)
Previous changeset 1:b1fa5b9f7e4c (2024-04-22)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit 9d922676808c5f57e9c01b148eec6cc0a63c53e5
modified:
macros.xml
segmetrics.xml
b
diff -r b1fa5b9f7e4c -r 86392285203a macros.xml
--- a/macros.xml Mon Apr 22 17:42:44 2024 +0000
+++ b/macros.xml Sat Dec 14 00:00:27 2024 +0000
b
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@TOOL_VERSION@">0.9.11</token>
     <xml name="requirements">
         <requirements>
b
diff -r b1fa5b9f7e4c -r 86392285203a segmetrics.xml
--- a/segmetrics.xml Mon Apr 22 17:42:44 2024 +0000
+++ b/segmetrics.xml Sat Dec 14 00:00:27 2024 +0000
b
@@ -48,9 +48,11 @@
             <param name="input_filename_file" ftype="tabular" value="sample.cnr" />
             <param name="segments" ftype="tabular" value="sample.cns" />
             <param name="drop_low_coverage" value="1" />
-            <param name="mean" value="1" />
-            <param name="median" value="1" />
-            <param name="mode" value="0" />
+            <section name="advanced_settings">
+                <param name="mean" value="1" />
+                <param name="median" value="1" />
+                <param name="mode" value="0" />
+            </section>
             <output name="gene_segmetrics">
                 <assert_contents><has_text text="chromosome"/></assert_contents>
             </output>