| Previous changeset 0:35aa0df55a62 (2018-06-28) Next changeset 2:6a638de7915c (2019-10-29) |
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Commit message:
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/maxbin2 commit c003bb1aa5c8c42650b27516f0951e0d67f11857-dirty |
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modified:
maxbin2.xml |
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| diff -r 35aa0df55a62 -r 864279a0d64b maxbin2.xml --- a/maxbin2.xml Thu Jun 28 08:49:29 2018 -0400 +++ b/maxbin2.xml Tue Oct 16 10:28:16 2018 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="maxbin2" name="MaxBin2" version="2.2.4"> +<tool id="maxbin2" name="MaxBin2" version="2.2.4_galaxy1"> <requirements> <requirement type="package" version="2.2.4">maxbin2</requirement> </requirements> @@ -64,7 +64,7 @@ </param> <when value="rds"> <param name="reads" argument="-read/-read2/..." type="data" format="fasta,fastq" multiple="true" label="Reads file(s)"/> - <param argument="--reassembly" type="boolean" truevalue="-reassembly" falsevalue="" checked="false" label="" help="Reassembly option is still highly experimental. To use this function, you need to feed MaxBin interleaved paired-end fastq or fasta file if you were to use this option." /> + <param argument="--reassembly" type="boolean" truevalue="-reassembly" falsevalue="" checked="false" label="" help="Reassembly option is still highly experimental. To use this function, you need to feed MaxBin interleaved paired-end fastq or fasta file." /> </when> <when value="abdc"> <param name="abund" argument="-abund/-abund2/..." type="data" format="tabular" multiple="true" label="Abundance file(s)"/> @@ -109,17 +109,17 @@ <!-- additional output in case of reassembly --> <collection name="reassembly_bins" type="list" label="${tool.name} on ${on_string} (reassembly bins)"> <discover_datasets directory="out.reassem" pattern="out.(?P<designation>[0-9]+).fasta" format="fasta" visible="false" /> - <filter>intype_cond['intype_select']=='rds' and intype_cond['reassembly']!=""</filter> + <filter>intype_cond['intype_select']=='rds' and intype_cond['reassembly']</filter> </collection> <collection name="reassembly_reads" type="list" label="${tool.name} on ${on_string} (reassembly reads)"> <discover_datasets directory="out.reassem" pattern="out.reads.(?P<designation>[0-9]+)" format="fasta" visible="false" /> - <filter>intype_cond['intype_select']=='rds' and intype_cond['reassembly']!=""</filter> + <filter>intype_cond['intype_select']=='rds' and intype_cond['reassembly']</filter> </collection> <data name="reassembly_noclass" format="fasta" label="${tool.name} on ${on_string} (reassembly unclassified sequences)" from_work_dir="out.reassem/out.reads.noclass"> - <filter>intype_cond['intype_select']=='rds' and intype_cond['reassembly']!=""</filter> + <filter>intype_cond['intype_select']=='rds' and intype_cond['reassembly']</filter> </data> - <data name="reassembly_n50" format="text" label="${tool.name} on ${on_string} (reassembly N50)" from_work_dir="out.reassem/N50.txt"> - <filter>intype_cond['intype_select']=='rds' and intype_cond['reassembly']!=""</filter> + <data name="reassembly_n50" format="txt" label="${tool.name} on ${on_string} (reassembly N50)" from_work_dir="out.reassem/N50.txt"> + <filter>intype_cond['intype_select']=='rds' and intype_cond['reassembly']</filter> </data> </outputs> <tests> @@ -206,7 +206,7 @@ <element name="002" file="3/out.reassem/out.reads.002" ftype="fasta"/> </output_collection> <output name="reassembly_noclass" file="3/out.reassem/out.reads.noclass" ftype="fasta" /> - <output name="reassembly_n50" file="3/out.reassem/N50.txt" ftype="text" /> + <output name="reassembly_n50" file="3/out.reassem/N50.txt" ftype="txt" /> </test> </tests> <help><![CDATA[ |