Repository 'data_manager_fetch_gene_annotation'
hg clone https://toolshed.g2.bx.psu.edu/repos/scottx611x/data_manager_fetch_gene_annotation

Changeset 13:865d5b55cce1 (2016-06-22)
Previous changeset 12:967e0c774dd8 (2016-06-22) Next changeset 14:4fb8bd379972 (2016-06-22)
Commit message:
Uploaded
modified:
data_manager_gene_annotation/data_manager_conf.xml
b
diff -r 967e0c774dd8 -r 865d5b55cce1 data_manager_gene_annotation/data_manager_conf.xml
--- a/data_manager_gene_annotation/data_manager_conf.xml Wed Jun 22 15:50:22 2016 -0400
+++ b/data_manager_gene_annotation/data_manager_conf.xml Wed Jun 22 16:18:10 2016 -0400
b
@@ -7,7 +7,14 @@
  <column name="date" />
  <column name="dbkey" />
  <column name="name" />
- <column name="path"/>
+ <column name="path" output_ref="out_file">
+ <move type="directory" relativize_symlinks="True">
+ <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
+ <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gene_annotations/${name}</target>
+ </move>
+ <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gene_annotations/${name}/${path}</value_translation>
+ <value_translation type="function">abspath</value_translation>
+ </column>
  </output>
  </data_table>
  </data_manager>