Repository 'repeatmodeler'
hg clone https://toolshed.g2.bx.psu.edu/repos/csbl/repeatmodeler

Changeset 5:8661b2607b7e (2023-05-03)
Previous changeset 4:a9fb165808c8 (2023-04-20) Next changeset 6:fbe22cb3c869 (2023-11-06)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmodeler commit 652ae30a67649b070efd62ba90159e079c5e7bd5
modified:
macros.xml
repeatmodeler.xml
b
diff -r a9fb165808c8 -r 8661b2607b7e macros.xml
--- a/macros.xml Thu Apr 20 08:49:13 2023 +0000
+++ b/macros.xml Wed May 03 09:31:16 2023 +0000
b
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">2.0.4</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
 
     <xml name="requirements">
         <requirement type="package" version="@TOOL_VERSION@">repeatmodeler</requirement>
b
diff -r a9fb165808c8 -r 8661b2607b7e repeatmodeler.xml
--- a/repeatmodeler.xml Thu Apr 20 08:49:13 2023 +0000
+++ b/repeatmodeler.xml Wed May 03 09:31:16 2023 +0000
b
@@ -11,12 +11,7 @@
 
 &&
 
-## "RMBlast jobs will use 4 cores each"
-pa=\$(( (\${GALAXY_SLOTS:-1}+3)/4 ))
-
-&&
-
-RepeatModeler -database 'rmdb' -threads \$pa
+RepeatModeler -database 'rmdb' -threads \${GALAXY_SLOTS:-1}
     ]]></command>
     <inputs>
         <param type="data" name="input_file" format="fasta" label="Input genome fasta"/>