| Previous changeset 4:fafa105e5f58 (2013-03-19) Next changeset 6:d90f56ecd2f9 (2013-03-20) |
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Commit message:
Fix test 2 |
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modified:
pileup_to_vcf.xml |
| b |
| diff -r fafa105e5f58 -r 8688e29ba96f pileup_to_vcf.xml --- a/pileup_to_vcf.xml Tue Mar 19 13:04:40 2013 -0500 +++ b/pileup_to_vcf.xml Tue Mar 19 15:05:20 2013 -0500 |
| b |
| @@ -92,7 +92,7 @@ <test> <param name="input_file" ftype="pileup" value="test.pileup" /> <param name="select_order" value="no"/> - <param name="min_base_qual" value="20"/> + <param name="min_base_qual" value="5"/> <param name="min_cvrg" value="5"/> <param name="min_var_pct" value=".1"/> <param name="allow_multiples" value="True"/> @@ -101,7 +101,8 @@ <output name="output_file"> <assert_contents> <has_text_matching expression="seq2\t156\t.\tA\tG,AAG\t.\tPASS\t.*" /> - <has_text_matching expression="chr1\t158571283\t.\tA\tC\t.\tPASS\t.*" /> + <has_text_matching expression="chr1\t158571283\t.\tA\tT\t.\tPASS\t.*" /> + <not_has_text text="125070485" /> </assert_contents> </output> </test> |