| Previous changeset 5:4310ac018d05 (2017-01-21) Next changeset 7:870dfc90473f (2017-02-23) |
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Commit message:
planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 057c2fd398055dc86eb2c00d8a74f301d5c231d9-dirty |
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modified:
addCdhitseqs.py evaluation.py glob_report.xml test-data/1.1.model.tree.fa test-data/1.2.model.tree.fa test-data/1.cluster.top5.alirna.png test-data/1.cluster.top5.aln.png test-data/1.tabular test-data/2.cluster.top5.alirna.png test-data/2.cluster.top5.aln.png test-data/2.tabular test-data/FASTA.zip test-data/RESULTS.zip test-data/RESULTS/1.cluster.all test-data/RESULTS/1.cluster.all.fa test-data/RESULTS/1.cluster.part test-data/RESULTS/1.cluster.stats test-data/RESULTS/2.cluster.all test-data/RESULTS/2.cluster.all.fa test-data/RESULTS/2.cluster.part test-data/RESULTS/2.cluster.stats test-data/RESULTS/cluster.final.stats test-data/RESULTS/fullTab.tabular test-data/RESULTS/partitions/final_overlap.map test-data/RESULTS/partitions/final_overlap.matrix test-data/RESULTS/partitions/final_partition.hard.best test-data/RESULTS/partitions/final_partition.hard.merged test-data/RESULTS/partitions/final_partition.soft test-data/RESULTS/partitions/final_partition.used_cmsearch |
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added:
test-data/1.3.model.tree.fa test-data/1.4.model.tree.fa test-data/1.5.model.tree.fa test-data/3.cluster.top5.alirna.png test-data/3.cluster.top5.aln.png test-data/3.tabular test-data/4.cluster.top5.alirna.png test-data/4.cluster.top5.aln.png test-data/4.tabular test-data/5.tabular test-data/RESULTS/1.cluster.top5.fa test-data/RESULTS/2.cluster.top5.fa test-data/RESULTS/3.cluster.all test-data/RESULTS/3.cluster.all.fa test-data/RESULTS/3.cluster.part test-data/RESULTS/3.cluster.stats test-data/RESULTS/3.cluster.top5.fa test-data/RESULTS/4.cluster.all test-data/RESULTS/4.cluster.all.fa test-data/RESULTS/4.cluster.part test-data/RESULTS/4.cluster.stats test-data/RESULTS/4.cluster.top5.fa test-data/RESULTS/evaluation.txt |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 addCdhitseqs.py --- a/addCdhitseqs.py Sat Jan 21 17:39:21 2017 -0500 +++ b/addCdhitseqs.py Wed Feb 22 16:51:06 2017 -0500 |
| [ |
| @@ -3,26 +3,29 @@ import sys cdhitcluster = sys.argv[1] -#clusters = sys.argv[2] cluster_seqs_stats_path = "RESULTS/*.cluster.all" cluster_seqs_stats_files = glob.glob(cluster_seqs_stats_path) -#clusterFiles = clusters.split(',') repSeqRedSeqdict = {} repLine = "" count = 0 first = False +add_FullId = "" +k = 0 with open(cdhitcluster, 'r+') as f: - lines = f.readlines() + content = f.read() + reps = re.compile("^.*\*$", re.MULTILINE).findall(content) + lines = content.split('\n') + for i in range(0, len(lines)): line = lines[i] if ">Cluster" in line: first = True count = 0 - if i+1 < len(lines): - repLine = lines[i+1] + repLine = reps[k] + k = k+1 continue elif not first: count += 1 @@ -33,27 +36,41 @@ if count > 0: repLine = repLine.strip() rep_FullId = repLine.split()[2] - rep_FullId = rep_FullId.replace(">", "") - #rep_short_id = re.findall("_".join(["[^_]+"] * 2), rep_FullId)[0] - rep_FullId = rep_FullId.replace("...", "") + rep_FullId = rep_FullId.replace(">","") + rep_FullId = rep_FullId.replace("...","") + if "*" in line or not line.strip(): + continue line = line.strip() add_FullId = line.split()[2] - add_FullId = add_FullId.replace(">", "") - add_FullId = add_FullId.replace("...", "") - #add_short_id = re.findall("_".join(["[^_]+"] * 2), add_FullId)[0] + add_FullId = add_FullId.replace(">","") + add_FullId = add_FullId.replace("...","") lineArr.append(add_FullId) repSeqRedSeqdict[rep_FullId] = lineArr - #lineArr.append(add_short_id) - #repSeqRedSeqdict[rep_short_id] = lineArr toWrite = "" - for singleFile in sorted(cluster_seqs_stats_files): - with open(singleFile, "a+") as clFile: - file_content = clFile.read() - first_line = file_content.split('\n')[0] + toWrite = "" + with open(singleFile, "r+") as clFile: + file_lines = clFile.readlines() + for line in file_lines: + line = '\t'.join(line.split()) + toWrite += line + '\n' + clFile.seek(0) + clFile.write(toWrite) + clFile.truncate() + first_line = file_lines[0] + toWrite = "" + cols = first_line.split() + file_content = '\n'.join(file_lines) for key, val in repSeqRedSeqdict.items(): if key in file_content: + for i in val: - toWrite += first_line.split()[0] + " " + first_line.split()[1] + " " + first_line.split()[2] + " " + " - " + " " + "CD-Hit" + " " + first_line.split()[5] + " " + "ORIGID" + " " + str(i) + "\n" + cols[3] = "---" + cols[4] = "CD-Hit" + cols[7] = str(i) + if len(first_line.split()) > 9: + cols[9] = str(i.rsplit("_",1)[0]) + toWrite += '\t'.join(cols) + toWrite +="\n" clFile.write(toWrite) |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 evaluation.py --- a/evaluation.py Sat Jan 21 17:39:21 2017 -0500 +++ b/evaluation.py Wed Feb 22 16:51:06 2017 -0500 |
| [ |
| @@ -20,8 +20,8 @@ numberOfClusters += 1 with open(singleFile, "r") as f: for line in f.readlines(): - uniqueId = line.split()[7] - clustNum = line.split()[1] + uniqueId = line.split()[8] + clustNum = line.split()[2] rnaClass, sep, tail = uniqueId.partition("_") listOfClasses.append(rnaClass) listOfClusters.append(clustNum) |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 glob_report.xml --- a/glob_report.xml Sat Jan 21 17:39:21 2017 -0500 +++ b/glob_report.xml Wed Feb 22 16:51:06 2017 -0500 |
| [ |
| @@ -1,6 +1,6 @@ <tool id="glob_report" name="Report_Results" version="0.1"> <requirements> - <requirement type="package" version="0.1.7">graphclust-wrappers</requirement> + <requirement type="package" version="0.1.8">graphclust-wrappers</requirement> <requirement type="package" version='0.5'>perl-array-utils</requirement> <requirement type="package" version='0.18.1'>scikit-learn</requirement> <requirement type="package" version='1.8.10'>locarna</requirement> @@ -29,7 +29,7 @@ #set $inputFilesTrees += str($mods)+',' #end for #set $inputFilesTrees = $inputFilesTrees[:-1] - 'glob_res.pl' + 'glob_res.pl' '$inputFiles' $merge_cluster_ol $merge_overlap @@ -158,8 +158,8 @@ <tests> <test> <param name="FASTA" value="FASTA.zip" ftype="searchgui_archive"/> - <param name="cmsearch_results" value="1.tabular,2.tabular"/> - <param name="model_tree_files" value="1.1.model.tree.fa,1.2.model.tree.fa"/> + <param name="cmsearch_results" value="1.tabular,2.tabular,3.tabular,4.tabular,5.tabular"/> + <param name="model_tree_files" value="1.1.model.tree.fa,1.2.model.tree.fa,1.3.model.tree.fa,1.4.model.tree.fa,1.5.model.tree.fa"/> <param name="partition_type" value="0"/> <param name="cut_type" value="0"/> <conditional name="iteration_num"> @@ -175,19 +175,23 @@ <output_collection name="clusters" type="list"> <element name="1.cluster.all" file="RESULTS/1.cluster.all" compare="contains"/> <element name="2.cluster.all" file="RESULTS/2.cluster.all" compare="contains"/> + <element name="3.cluster.all" file="RESULTS/3.cluster.all" compare="contains"/> + <element name="4.cluster.all" file="RESULTS/4.cluster.all" compare="contains"/> </output_collection> <output_collection name="partitions"> <element name="final_overlap.map" file="RESULTS/partitions/final_overlap.map" compare="contains"> <assert_contents> - <has_text text="1.1 1.1" /> - <has_text text="1.2 1.2" /> + <has_text text="1.1 1.1 1.2" /> + <has_text text="1.3 1.3" /> + <has_text text="1.4 1.4" /> + <has_text text="1.5 1.5 " /> </assert_contents> </element> <element name="final_overlap.matrix" file="RESULTS/partitions/final_overlap.matrix" compare="contains"> <assert_contents> - <has_text text="MODEL CLASS 0 0" /> - <has_text text="1.2" /> - <has_text text="1.1" /> + <has_text text="MODEL CLASS 0 0 0 0 0" /> + <!--has_text text="1.2" /> + <has_text text="1.1" /--> </assert_contents> </element> <element name="final_partition.hard.best" file="RESULTS/partitions/final_partition.hard.best" /> @@ -199,10 +203,14 @@ <output_collection name="topSecondaryStruct" type="list"> <element name="1.cluster.top5.alirna.png" file="1.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> <element name="2.cluster.top5.alirna.png" file="2.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> + <element name="3.cluster.top5.alirna.png" file="3.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> + <element name="4.cluster.top5.alirna.png" file="4.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> </output_collection> <output_collection name="topDot" type="list"> <element name="1.cluster.top5.aln.png" file="1.cluster.top5.aln.png" ftype="png" compare="sim_size" /> <element name="2.cluster.top5.aln.png" file="2.cluster.top5.aln.png" ftype="png" compare="sim_size" /> + <element name="3.cluster.top5.aln.png" file="3.cluster.top5.aln.png" ftype="png" compare="sim_size" /> + <element name="4.cluster.top5.aln.png" file="4.cluster.top5.aln.png" ftype="png" compare="sim_size" /> </output_collection> <output name="RESULTS_zip" file="RESULTS.zip" ftype="zip" compare="sim_size" /> |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/1.1.model.tree.fa --- a/test-data/1.1.model.tree.fa Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/1.1.model.tree.fa Wed Feb 22 16:51:06 2017 -0500 |
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| @@ -1,40 +1,40 @@ ->7 SEQ7#1#83#+ ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 -GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUUCUGACA ->9 SEQ9#1#73#+ ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 -GCUUCUGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCA ->10 SEQ10#1#73#+ ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 -GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG ->15 SEQ15#1#73#+ ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1 -GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCA ->16 SEQ16#1#72#+ ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20 -GGGGAUGUAGCUCAGUGGUAGAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCA ->17 SEQ17#1#71#+ ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21 -GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUCCCACGCGGGAGACCCGGGUUCAAUUCCCGGCCAAUGCA ->18 SEQ18#1#72#+ ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 -GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA ->23 SEQ23#1#74#+ ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27 -GGCCGGUUAGCUCAGUUGGUUAGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCA ->28 SEQ28#1#71#+ ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 -GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA ->30 SEQ30#1#72#+ ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33 -GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC ->31 SEQ31#1#73#+ ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 -GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA ->32 SEQ32#1#73#+ ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 -GUUUCCGUAGUGUAGCGGUUAUCACAUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA ->33 SEQ33#1#72#+ ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 -UCCUCGUUAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG ->35 SEQ35#1#72#+ ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38 -UCCCUGGUGGUCUAGUGGCUAGGAUUCGGCGCUUUCACCGCCGCGCCCCGGGUUCGAUUCCCGGCCAGGAAU ->37 SEQ37#1#82#+ ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 -GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA ->46 SEQ46#1#72#+ ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5 -UCCCUGGUGGUCUAGUGGUUAGGAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA ->51 SEQ51#1#88#+ ORIGID RF00006_rep.0_AF045145.1/1-88_51 ORIGHEAD RF00006_rep.0 -GGCUGGCUUUAGCUCAGCGGUUACUUCGCGUGUCAUCAAACCACCUCUCUGGGUUGUUCGAGACCCGCGGGCGCUCUCCAGCCCUCUU ->52 SEQ52#1#101#+ ORIGID RF00006_rep.1_AC005219.1/49914-50014_52 ORIGHEAD RF00006_rep.1 -GGGUCGGAGUUAGCUCAAGCGGUUACCUCCUCAUGCCGGACUUUCUAUCUGUCCAUCUCUGUGCUGGGGUUCGAGACCCGCGGGUGCUUACUGACCCUUUU ->53 SEQ53#1#98#+ ORIGID RF00006_rep.2_AF045143.1/1-98_53 ORIGHEAD RF00006_rep.2 -GGCUGGCUUUAGCUCAGCGGUUACUUCGACAGUUCUUUAAUUGAAACAAGCAACCUGUCUGGGUUGUUCGAGACCCGCGGGCGCUCUCCAGUCCUUUU ->54 SEQ54#1#88#+ ORIGID RF00006_rep.3_AF045144.1/1-88_54 ORIGHEAD RF00006_rep.3 -GGCUGGCUUUAGCUCAGCGGUUACUUCGAGUACAUUGUAACCACCUCUCUGGGUGGUUCGAGACCCGCGGGUGCUUUCCAGCUCUUUU +>15 SEQ5#23#72#+ ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10 +CACUCUGGACUUUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUGGGACCU +>19 SEQ7#26#75#+ ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 +CGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCAC +>20 SEQ7#34#83#+ ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 +UCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUUCUGACA +>26 SEQ10#24#73#+ ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 +GCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG +>27 SEQ11#1#50#+ ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 +GCAGCGAUGGCCGAGUGGUUAAGGCGUUGGACUUGAAAUCCAAUGGGGUC +>28 SEQ11#26#75#+ ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 +GUUGGACUUGAAAUCCAAUGGGGUCUCCCCGCGCAGGUUCGAACCCUGCU +>29 SEQ11#33#82#+ ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 +UUGAAAUCCAAUGGGGUCUCCCCGCGCAGGUUCGAACCCUGCUCGCUGCG +>30 SEQ12#1#50#+ ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 +GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUUGAAAUCCAUUGGGGUU +>31 SEQ12#26#75#+ ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 +GAUGGACUUGAAAUCCAUUGGGGUUUCCCCGCGCAGGUUCGAAUCCUGUC +>32 SEQ12#33#82#+ ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 +UUGAAAUCCAUUGGGGUUUCCCCGCGCAGGUUCGAAUCCUGUCGGCUACG +>33 SEQ13#1#50#+ ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 +GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUAGAAAUCCAUUGGGGUU +>34 SEQ13#26#75#+ ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 +GAUGGACUAGAAAUCCAUUGGGGUUUCCCCACGCAGGUUCGAAUCCUGCC +>35 SEQ13#33#82#+ ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 +UAGAAAUCCAUUGGGGUUUCCCCACGCAGGUUCGAAUCCUGCCGACUACG +>47 SEQ19#26#75#+ ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23 +GAGCAGACUCUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCC +>48 SEQ19#33#82#+ ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23 +CUCUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCCCCCACCA +>50 SEQ20#23#72#+ ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24 +GCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU +>54 SEQ22#23#72#+ ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005_rep.26 +CACGGAGAAUUUUGGAUUCUCAGGGAUGGGUUCGAUUCUCAUAGUCCUAG +>84 SEQ37#26#75#+ ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 +CGCUGGAUUUAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACC +>85 SEQ37#33#82#+ ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 +UUUAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA +>111 SEQ50#24#73#+ ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9 +GCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCG |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/1.2.model.tree.fa --- a/test-data/1.2.model.tree.fa Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/1.2.model.tree.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,40 +1,40 @@ ->1 SEQ1#1#120#+ ORIGID RF00001_rep.0_AL096764.11/46123-46004_1 ORIGHEAD RF00001_rep.0 -GUCUAUGGCCAUACCACCCUGAAUGUGCUUGAUCUCAUCUGAUCUCGUGAAGCCAAGCAGGGUGGGGCCUAGUUAGUACUUGGAUGGGAGACUUCCUGGGAAUAUAAGCUGCUGUUGGCU ->3 SEQ3#1#104#+ ORIGID RF00001_rep.2_AJ508600.1/161-58_3 ORIGHEAD RF00001_rep.2 -GUCUACAGCCAUACCAUCCUGAACAUGCCAGAUCUUGUCUGACCUCUGAAGCUAAGCAGGGUCAAGCCUGGUUAGUACUUGGGAGAAGCUGGUGUGGCUAGACC ->39 SEQ39#1#69#+ ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005_rep.41 -GUUCUUGUAGUUGAAAUACAACGAUGGUUUUUCAUAUCAUUGGUCGUGGUUGUAGUCCGUGCGAGAAUA ->55 SEQ55#1#113#+ ORIGID RF00019_rep.0_V00584.1/39-151_55 ORIGHEAD RF00019_rep.0 -GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUUACAGAUCGAACUCCUUGUUCUACUCUUUCCCCCCUUCUCACUACUGCACUUGACUAGUCUUUU ->56 SEQ56#1#95#+ ORIGID RF00019_rep.1_L32608.1/283-377_56 ORIGHEAD RF00019_rep.1 -GGCUGGUCCGAUGGUAGUGGGUUAUCAGAACUUAUUAACAUUAGUGUCACUAAAGUUGGUAUACAACCCCCCACUGCUAAAUUUGACUGGCUUUU ->57 SEQ57#1#102#+ ORIGID RF00019_rep.2_ABBA01033605.1/1707-1808_57 ORIGHEAD RF00019_rep.2 -GGCUGGUCCGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUUUU ->59 SEQ59#1#79#+ ORIGID RF00027_rep.0_AF480570.1/1-79_59 ORIGHEAD RF00027_rep.0 -GUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUC ->72 SEQ72#1#126#+ ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 -ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAUGGGUACCUAGUGAGGGCAGUACUGCUAACUCCUGCACAACACACCGAAAUCAACUAGAGCUUUGCUUUGCCUUGGUGCAGUUUUUGGAGAA ->75 SEQ75#1#126#+ ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 -ACCAUCCUUUUCUUGGGGUUGCACUACUGUCUAAUGAGUGCAUAAUGAGGGCAGUAUUGCUAACGCCUAUACAAUGCACCUGCAUCAACUAGAACUUUGCUUUACCUUGGUACAAUUUUUGGAAAA ->78 SEQ78#1#80#+ ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 -GGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUGUGACGUAGGACACAUGGUCUACUUCUUCUCAAUAUC ->79 SEQ79#1#79#+ ORIGID RF00641_rep.12_AL132709.5/56006-55928_79 ORIGHEAD RF00641_rep.12 -GGUACUUGAAGGGAGAUCGACCGUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUUGAUCUUUUCUCAGUAUC ->80 SEQ80#1#79#+ ORIGID RF00641_rep.13_AL132709.5/55165-55087_80 ORIGHEAD RF00641_rep.13 -GGUGCCUGAGGAGAGGUGGCCUGUGUUGCAUUCACAGAAAUCAUGACACACAAGACACGAGCGGCCUCUCUUCAGUAUC ->81 SEQ81#1#77#+ ORIGID RF00641_rep.1_AL132709.5/86350-86274_81 ORIGHEAD RF00641_rep.1 -GGUACUGGAGGAGAGGUUAUCUGUGUUUUUUCCCUUUAUUUAUGAUGAAAAAUAUGGUGCACUUCUAUUUGAGAAUC ->82 SEQ82#1#81#+ ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 -GAUACUCGAAGGAGAGGUUGUCCGUGUUGUCUUCUCUUUAUUUAUGAUGAAACAUACACGGGAAACCUCUUUUUUAGUAUC ->84 SEQ84#1#79#+ ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 -GGUACUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUCGGUACU ->85 SEQ85#1#79#+ ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 -GGUGCUUAAAGAAUGGCUGUCCGUAGUAUGGUCUCUAUAUUUAUGAUGAUUAAUAUCGGACAACCAUUGUUUUAGUAUC ->86 SEQ86#1#79#+ ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 -GGUACUUAAGGGGGAGGUGGGCUUUGAAUAAUAAGUUUAUUGACGUGGAAUAUACAAGGGCAAGCUCUCUGUGAGUAUC ->87 SEQ87#1#78#+ ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 -GGUACCUGAAAUAGGUUGCCUGUGAGGUGUUCACUUUCUAUAUGAUGAAUAUUAUACAGUCAACCUCUUUCCGAUAUC ->88 SEQ88#1#81#+ ORIGID RF00641_rep.8_AL132709.5/61554-61474_88 ORIGHEAD RF00641_rep.8 -GGUACUGGUGGAGAGGUCUUCCAUGAUGCAUUCGAUUUAUUUUUUGACCAAUCCUACAUAGUGGACUCUUUUGAAAGCAUU ->89 SEQ89#1#80#+ ORIGID RF00641_rep.9_AL132709.5/98273-98194_89 ORIGHEAD RF00641_rep.9 -GGUACUUGGAGAGAUAGUAGACCGUAUAGCGUACGCUUUAUCUGUGACGUAUGUAACACGGUCCACUAACCCUCAGUAUC +>23 SEQ9#1#50#+ ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 +GCUUCUGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCC +>24 SEQ9#24#73#+ ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 +ACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCA +>39 SEQ15#24#73#+ ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1 +GCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCA +>43 SEQ17#22#71#+ ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21 +AAUUCUCGCCUCCCACGCGGGAGACCCGGGUUCAAUUCCCGGCCAAUGCA +>45 SEQ18#23#72#+ ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 +CAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA +>51 SEQ21#1#50#+ ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 +GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUG +>52 SEQ21#25#74#+ ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 +GCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG +>66 SEQ28#22#71#+ ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 +AAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA +>70 SEQ30#23#72#+ ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33 +AUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC +>71 SEQ31#1#50#+ ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 +GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCC +>72 SEQ31#24#73#+ ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 +ACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA +>73 SEQ32#1#50#+ ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 +GUUUCCGUAGUGUAGCGGUUAUCACAUUCGCCUCACACGCGAAAGGUCCC +>74 SEQ32#24#73#+ ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 +ACAUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA +>76 SEQ33#23#72#+ ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 +UAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG +>80 SEQ35#23#72#+ ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38 +GAUUCGGCGCUUUCACCGCCGCGCCCCGGGUUCGAUUCCCGGCCAGGAAU +>81 SEQ36#1#50#+ ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 +GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCC +>82 SEQ36#24#73#+ ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 +ACGUUCGCCUAACACGCGAAAGGUCCCUGGAUCAAAACCAGGCGGAAACA +>103 SEQ46#23#72#+ ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5 +GAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA +>113 SEQ51#26#75#+ ORIGID RF00006_rep.0_AF045145.1/1-88_51 ORIGHEAD RF00006_rep.0 +UCGCGUGUCAUCAAACCACCUCUCUGGGUUGUUCGAGACCCGCGGGCGCU +>159 SEQ69#26#75#+ ORIGID RF00049_rep.0_X52138.1/3930-4011_69 ORIGHEAD RF00049_rep.0 +CGGCCUCGAAAUUCACUCGUCGAAGAGUCAAAACCGAGCUUUUUAACACU |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/1.3.model.tree.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/1.3.model.tree.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,40 @@ +>17 SEQ6#17#66#+ ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005_rep.11 +CUAAUACACCAGUCUUGUAAACCGGAGAUGAAAACCUUUUUCCAAGGACA +>21 SEQ8#1#50#+ ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005_rep.13 +CACUGUAAAGCUAACUUAGCAUUAACCUUUUAAGUUAAAGAUUAAGAGAA +>22 SEQ8#21#70#+ ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005_rep.13 +AUUAACCUUUUAAGUUAAAGAUUAAGAGAACCAACACCUCUUUACAGUGA +>60 SEQ25#20#69#+ ORIGID RF00005_rep.29_AF381996.2/4265-4333_25 ORIGHEAD RF00005_rep.29 +GAGUUACUUUGAUAGAGUAAAUAAUAGGAGCUUAAACCCCCUUAUUUCUA +>86 SEQ38#1#50#+ ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005_rep.40 +UGGUAUAUAGUUUAAACAAAACGAAUGAUUUCGACUCAUUAAAUUAUGAU +>92 SEQ41#1#50#+ ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 +ACUCUUUUAGUAUAAAUAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC +>93 SEQ41#19#68#+ ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 +GUACCGUUAACUUCCAAUUAACUAGUUUUGACAACAUUCAAAAAAGAGUA +>94 SEQ42#1#50#+ ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005_rep.44 +GUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC +>96 SEQ43#1#50#+ ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 +GUUUAUGUAGCUUACCUCCUCAAAGCAAUACACUGAAAAUGUUUAGACGG +>97 SEQ43#22#71#+ ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 +AAAGCAAUACACUGAAAAUGUUUAGACGGGCUCACAUCACCCCAUAAACA +>98 SEQ44#1#50#+ ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005_rep.46 +CAGAGUGUAGCUUAACACAAAGCACCCAACUUACACUUAGGAGAUUUCAA +>104 SEQ47#1#50#+ ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 +AAGGUAUUAGAAAAACCAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGC +>105 SEQ47#19#68#+ ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 +UUUCAUAACUUUGUCAAAGUUAAAUUAUAGGCUAAAUCCUAUAUAUCUUA +>108 SEQ49#1#50#+ ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005_rep.8 +AGAAAUUUAGGUUAAAUACAGACCAAGAGCCUUCAAAGCCCUCAGUAAGU +>109 SEQ49#19#68#+ ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005_rep.8 +CAGACCAAGAGCCUUCAAAGCCCUCAGUAAGUUGCAAUACUUAAUUUCUG +>129 SEQ56#26#75#+ ORIGID RF00019_rep.1_L32608.1/283-377_56 ORIGHEAD RF00019_rep.1 +CAGAACUUAUUAACAUUAGUGUCACUAAAGUUGGUAUACAACCCCCCACU +>132 SEQ57#26#75#+ ORIGID RF00019_rep.2_ABBA01033605.1/1707-1808_57 ORIGHEAD RF00019_rep.2 +ACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACU +>135 SEQ58#26#75#+ ORIGID RF00019_rep.3_AADD01087475.1/2469-2552_58 ORIGHEAD RF00019_rep.3 +UGUUAAGUUGAUUUAACAUUGUCUCCCCCCACAACCGCGCUUGACUAGCU +>195 SEQ82#32#81#+ ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 +UUCUCUUUAUUUAUGAUGAAACAUACACGGGAAACCUCUUUUUUAGUAUC +>205 SEQ87#29#78#+ ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 +GUUCACUUUCUAUAUGAUGAAUAUUAUACAGUCAACCUCUUUCCGAUAUC |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/1.4.model.tree.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/1.4.model.tree.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,40 @@ +>12 SEQ4#1#50#+ ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0 +GGCUCCAUAGCUCAGGGGUUAGAGCACUGGUCUUGUAAACCAGGGGUCGC +>141 SEQ60#38#87#+ ORIGID RF00027_rep.1_AC048341.22/3536-3622_60 ORIGHEAD RF00027_rep.1 +GUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGU +>145 SEQ62#13#62#+ ORIGID RF00031_rep.0_X71973.1/730-791_62 ORIGHEAD RF00031_rep.0 +ACGGCCUGCCUGCAAACCUGCUGGUGGGGCAGACCCGAAAAUCCAGCGUG +>151 SEQ65#8#57#+ ORIGID RF00031_rep.3_X53463.1/847-903_65 ORIGHEAD RF00031_rep.3 +AAUGAUGGCACCUUCCUAAACCCUCAUGGGUGGUGUCUGAGAGGCGUGAA +>156 SEQ68#1#50#+ ORIGID RF00031_rep.6_BC003127.1/865-928_68 ORIGHEAD RF00031_rep.6 +GUCACUGCAUGAUCCGCUCUGGUCAAACCCUUCCAGGCCAGCCAGAGUGG +>157 SEQ68#15#64#+ ORIGID RF00031_rep.6_BC003127.1/865-928_68 ORIGHEAD RF00031_rep.6 +CGCUCUGGUCAAACCCUUCCAGGCCAGCCAGAGUGGGGAUGGUCUGUGAC +>165 SEQ72#1#50#+ ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAUGGGUACCUAGUGAGG +>166 SEQ72#26#75#+ ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 +ACUGUCCAAUGGGUACCUAGUGAGGGCAGUACUGCUAACUCCUGCACAAC +>167 SEQ72#51#100#+ ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 +GCAGUACUGCUAACUCCUGCACAACACACCGAAAUCAACUAGAGCUUUGC +>169 SEQ73#1#50#+ ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAAGAGCAUGUAGUGAGG +>170 SEQ73#26#75#+ ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 +ACUGUCCAAAGAGCAUGUAGUGAGGGCAGUACUGCUAACGUCUACACAAC +>171 SEQ73#51#100#+ ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 +GCAGUACUGCUAACGUCUACACAACACACCCACCUCAACUAGAGCUUUGC +>173 SEQ74#1#50#+ ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 +ACCAUCCUUUUCUUGGGGUUGCGCUACUGUCCAAUGAGCGCAUAGUGAGG +>174 SEQ74#26#75#+ ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 +ACUGUCCAAUGAGCGCAUAGUGAGGGCAGUACUGCUAACGCCUGAACAAC +>175 SEQ74#51#100#+ ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 +GCAGUACUGCUAACGCCUGAACAACACACCCGCAUCAACUAGAGCUUUUG +>177 SEQ75#1#50#+ ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCUAAUGAGUGCAUAAUGAGG +>178 SEQ75#26#75#+ ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 +ACUGUCUAAUGAGUGCAUAAUGAGGGCAGUAUUGCUAACGCCUAUACAAU +>179 SEQ75#51#100#+ ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 +GCAGUAUUGCUAACGCCUAUACAAUGCACCUGCAUCAACUAGAACUUUGC +>212 SEQ90#17#66#+ ORIGID RF00693_rep.0_AADD01093451.1/1636-1571_90 ORIGHEAD RF00693_rep.0 +UUCUGCACACAAUAAAGAAACUAGUGUACAGAAAUGUUUACUUGUCUAUG +>214 SEQ91#20#69#+ ORIGID RF00693_rep.1_AL031669.28/23303-23371_91 ORIGHEAD RF00693_rep.1 +UGCACAACCAGAAUACUCAAACUAGCAUGAGGAAAGGCUUCUGUAACAGU |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/1.5.model.tree.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/1.5.model.tree.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,40 @@ +>8 SEQ2#69#118#+ ORIGID RF00001_rep.1_U89919.1/939-1056_2 ORIGHEAD RF00001_rep.1 +UGGUUAGUAUUGGGAUGGCAGACCCCCUGGAAAUACAGGGUGCUGAAGGU +>37 SEQ14#24#73#+ ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19 +GUGCUUAGCUGUUAACUAAGUGUUUGUGGGUUUAAGUCCCAUUGGUCUAG +>44 SEQ18#1#50#+ ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 +GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCG +>53 SEQ22#1#50#+ ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005_rep.26 +UAGGAUGGGGUGUGAUAGGUGGCACGGAGAAUUUUGGAUUCUCAGGGAUG +>65 SEQ28#1#50#+ ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 +GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGG +>68 SEQ29#17#66#+ ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005_rep.32 +GAAGCAUUGGACUGUAAAUCUAAAGACAGGGGUUAGGCCUCUUUUUACCA +>106 SEQ48#1#50#+ ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005_rep.7 +ACUUUUAAAGGAUAACAGCUAUCCAUUGGUCUUAGGCCCCAAAAAUUUUG +>107 SEQ48#22#71#+ ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005_rep.7 +UCCAUUGGUCUUAGGCCCCAAAAAUUUUGGUGCAACUCCAAAUAAAAGUA +>124 SEQ55#1#50#+ ORIGID RF00019_rep.0_V00584.1/39-151_55 ORIGHEAD RF00019_rep.0 +GGCUGGUCCGAAGGUAGUGAGUUAUCUCAAUUGAUUGUUCACAGUCAGUU +>134 SEQ58#1#50#+ ORIGID RF00019_rep.3_AADD01087475.1/2469-2552_58 ORIGHEAD RF00019_rep.3 +AGUUGGUCCGAGUGUUGUGGGUUAUUGUUAAGUUGAUUUAACAUUGUCUC +>137 SEQ59#1#50#+ ORIGID RF00027_rep.0_AF480570.1/1-79_59 ORIGHEAD RF00027_rep.0 +GUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUU +>138 SEQ59#30#79#+ ORIGID RF00027_rep.0_AF480570.1/1-79_59 ORIGHEAD RF00027_rep.0 +UAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUC +>139 SEQ60#1#50#+ ORIGID RF00027_rep.1_AC048341.22/3536-3622_60 ORIGHEAD RF00027_rep.1 +CCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACAUUGCCCG +>140 SEQ60#26#75#+ ORIGID RF00027_rep.1_AC048341.22/3536-3622_60 ORIGHEAD RF00027_rep.1 +GUUGGUCGGGUUGUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUAC +>142 SEQ61#1#50#+ ORIGID RF00027_rep.2_AC018755.3/119936-120011_61 ORIGHEAD RF00027_rep.2 +CCGGGCUGAGGUAGGAGGUUGUAUAGUUGAGGAGGACACCCAAGGAGAUC +>185 SEQ78#1#50#+ ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 +GGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUGUGACGU +>200 SEQ85#1#50#+ ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 +GGUGCUUAAAGAAUGGCUGUCCGUAGUAUGGUCUCUAUAUUUAUGAUGAU +>201 SEQ85#30#79#+ ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 +GGUCUCUAUAUUUAUGAUGAUUAAUAUCGGACAACCAUUGUUUUAGUAUC +>202 SEQ86#1#50#+ ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 +GGUACUUAAGGGGGAGGUGGGCUUUGAAUAAUAAGUUUAUUGACGUGGAA +>204 SEQ87#1#50#+ ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 +GGUACCUGAAAUAGGUUGCCUGUGAGGUGUUCACUUUCUAUAUGAUGAAU |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/1.cluster.top5.alirna.png |
| b |
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| diff -r 4310ac018d05 -r 869a6e807d76 test-data/1.tabular --- a/test-data/1.tabular Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/1.tabular Wed Feb 22 16:51:06 2017 -0500 |
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| b'@@ -1,46 +1,35 @@\n-SEQ11\t-\tdataset_2087\t-\tcm\t1\t72\t1\t82\t+\tno\t1\t0.62\t0.0\t88.8\t1.1e-38\t!\tORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16\n-SEQ13\t-\tdataset_2087\t-\tcm\t1\t72\t1\t82\t+\tno\t1\t0.56\t0.0\t87.5\t3.5e-38\t!\tORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18\n-SEQ31\t-\tdataset_2087\t-\tcm\t1\t72\t1\t73\t+\tno\t1\t0.56\t0.0\t84.9\t3.1e-37\t!\tORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34\n-SEQ37\t-\tdataset_2087\t-\tcm\t1\t72\t1\t82\t+\tno\t1\t0.63\t0.0\t84.9\t3.4e-37\t!\tORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3\n-SEQ12\t-\tdataset_2087\t-\tcm\t1\t72\t1\t82\t+\tno\t1\t0.57\t0.0\t84.8\t3.7e-37\t!\tORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17\n-SEQ9\t-\tdataset_2087\t-\tcm\t1\t72\t1\t73\t+\tno\t1\t0.56\t0.0\t83.8\t8.7e-37\t!\tORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14\n-SEQ32\t-\tdataset_2087\t-\tcm\t1\t72\t1\t73\t+\tno\t1\t0.58\t0.0\t82.5\t2.6e-36\t!\tORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35\n-SEQ28\t-\tdataset_2087\t-\tcm\t1\t72\t1\t71\t+\tno\t1\t0.62\t0.0\t82.4\t3e-36\t!\tORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31\n-SEQ7\t-\tdataset_2087\t-\tcm\t1\t72\t1\t83\t+\tno\t1\t0.63\t0.0\t81.0\t9.6e-36\t!\tORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12\n-SEQ46\t-\tdataset_2087\t-\tcm\t1\t72\t1\t72\t+\tno\t1\t0.65\t0.0\t80.9\t1.1e-35\t!\tORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5\n-SEQ26\t-\tdataset_2087\t-\tcm\t1\t72\t1\t72\t+\tno\t1\t0.50\t0.0\t80.0\t2.4e-35\t!\tORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005_rep.2\n-SEQ5\t-\tdataset_2087\t-\tcm\t1\t72\t1\t72\t+\tno\t1\t0.51\t0.0\t79.6\t3.2e-35\t!\tORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10\n-SEQ24\t-\tdataset_2087\t-\tcm\t1\t72\t1\t73\t+\tno\t1\t0.56\t0.0\t79.0\t5.6e-35\t!\tORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28\n-SEQ17\t-\tdataset_2087\t-\tcm\t1\t72\t1\t71\t+\tno\t1\t0.59\t0.0\t78.9\t6.2e-35\t!\tORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21\n-SEQ36\t-\tdataset_2087\t-\tcm\t1\t72\t1\t73\t+\tno\t1\t0.51\t0.0\t78.5\t8.3e-35\t!\tORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39\n-SEQ50\t-\tdataset_2087\t-\tcm\t1\t72\t1\t73\t+\tno\t1\t0.56\t0.0\t78.4\t9.1e-35\t!\tORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9\n-SEQ15\t-\tdataset_2087\t-\tcm\t1\t72\t1\t73\t+\tno\t1\t0.53\t0.0\t76.6\t4.5e-34\t!\tORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1\n-SEQ21\t-\tdataset_2087\t-\tcm\t1\t72\t1\t74\t+\tno\t1\t0.61\t0.0\t76.3\t5.7e-34\t!\tORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25\n-SEQ23\t-\tdataset_2087\t-\tcm\t1\t72\t1\t74\t+\tno\t1\t0.61\t0.0\t76.3\t5.7e-34\t!\tORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27\n-SEQ4\t-\tdataset_2087\t-\tcm\t1\t72\t1\t73\t+\tno\t1\t0.56\t0.0\t75.1\t1.7e-33\t!\tORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0\n-SEQ16\t-\tdataset_2087\t-\tcm\t1\t72\t1\t72\t+\tno\t1\t0.61\t0.0\t74.7\t2.3e-33\t!\tORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20\n-SEQ18\t-\tdataset_2087\t-\tcm\t1\t72\t1\t72\t+\tno\t1\t0.58\t0.0\t73.6\t6.2e-33\t!\tORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22\n-SEQ10\t-\tdataset_2087\t-\tcm\t1\t72\t1\t73\t+\tno\t1\t0.62\t0.0\t73.3\t8.3e-33\t!\tORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15\n-SEQ20\t-\tdataset_2087\t-\tcm\t1\t72\t1\t72\t+\tno\t1\t0.56\t0.0\t73.3\t8.3e-33\t!\tORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24\n-SEQ30\t-\tdataset_2087\t-\tcm\t1\t72\t1\t72\t+\tno\t1\t0.61\t0.0\t72.3\t1.9e-32\t!\tORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33\n-SEQ35\t-\tdataset_2087\t-\tcm\t1\t72\t1\t72\t+\tno\t1\t0.65\t0.0\t71.7\t3.2e-32\t!\tORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38\n-SEQ19\t-\tdataset_2087\t-\tcm\t1\t72\t1\t82\t+\tno\t1\t0.59\t0.0\t69.4\t2.5e-31\t!\tORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23\n-SEQ33\t-\tdataset_2087\t-\tcm\t1\t72\t1\t72\t+\tno\t1\t0.62\t0.0\t69.3\t2.5e-31\t!\tORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36\n-SEQ45\t-\tdataset_2087\t-\tcm\t1\t72\t1\t72\t+\tno\t1\t0.60\t0.0\t69.3\t2.7e-31\t!\tORIGID RF00005_rep.4_Z98744.2/66305-66234_45 '..b'42.0\t4.1e-08\t!\tORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38\n+SEQ50\t-\tdataset_5036\t-\tcm\t1\t41\t25\t66\t+\tno\t1\t0.48\t0.0\t40.8\t7.3e-08\t!\tORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9\n+SEQ11\t-\tdataset_5036\t-\tcm\t1\t41\t26\t75\t+\tno\t1\t0.58\t0.0\t40.5\t8.4e-08\t!\tORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16\n+SEQ21\t-\tdataset_5036\t-\tcm\t1\t41\t27\t67\t+\tno\t1\t0.59\t0.0\t40.0\t1.1e-07\t!\tORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25\n+SEQ13\t-\tdataset_5036\t-\tcm\t1\t41\t26\t75\t+\tno\t1\t0.54\t0.0\t40.0\t1.1e-07\t!\tORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18\n+SEQ12\t-\tdataset_5036\t-\tcm\t1\t41\t26\t75\t+\tno\t1\t0.54\t0.0\t39.8\t1.2e-07\t!\tORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17\n+SEQ28\t-\tdataset_5036\t-\tcm\t1\t41\t25\t64\t+\tno\t1\t0.75\t0.0\t39.7\t1.2e-07\t!\tORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31\n+SEQ18\t-\tdataset_5036\t-\tcm\t1\t41\t25\t65\t+\tno\t1\t0.61\t0.0\t39.4\t1.4e-07\t!\tORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22\n+SEQ33\t-\tdataset_5036\t-\tcm\t1\t41\t26\t65\t+\tno\t1\t0.73\t0.0\t39.4\t1.5e-07\t!\tORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36\n+SEQ4\t-\tdataset_5036\t-\tcm\t1\t41\t25\t66\t+\tno\t1\t0.52\t0.0\t39.3\t1.5e-07\t!\tORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0\n+SEQ9\t-\tdataset_5036\t-\tcm\t1\t41\t26\t66\t+\tno\t1\t0.66\t0.0\t39.2\t1.6e-07\t!\tORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14\n+SEQ31\t-\tdataset_5036\t-\tcm\t1\t41\t26\t66\t+\tno\t1\t0.66\t0.0\t39.2\t1.6e-07\t!\tORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34\n+SEQ7\t-\tdataset_5036\t-\tcm\t1\t41\t27\t76\t+\tno\t1\t0.64\t0.0\t39.0\t1.8e-07\t!\tORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12\n+SEQ17\t-\tdataset_5036\t-\tcm\t1\t41\t25\t64\t+\tno\t1\t0.70\t0.0\t38.7\t2e-07\t!\tORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21\n+SEQ23\t-\tdataset_5036\t-\tcm\t1\t41\t27\t67\t+\tno\t1\t0.59\t0.0\t38.6\t2.1e-07\t!\tORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27\n+SEQ20\t-\tdataset_5036\t-\tcm\t1\t41\t24\t65\t+\tno\t1\t0.48\t0.0\t38.2\t2.6e-07\t!\tORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24\n+SEQ10\t-\tdataset_5036\t-\tcm\t1\t41\t25\t66\t+\tno\t1\t0.57\t0.0\t37.5\t3.6e-07\t!\tORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15\n+SEQ45\t-\tdataset_5036\t-\tcm\t1\t41\t25\t65\t+\tno\t1\t0.59\t0.0\t37.4\t3.7e-07\t!\tORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005_rep.4\n+SEQ30\t-\tdataset_5036\t-\tcm\t1\t41\t25\t65\t+\tno\t1\t0.61\t0.0\t37.4\t3.8e-07\t!\tORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33\n+SEQ32\t-\tdataset_5036\t-\tcm\t1\t41\t25\t66\t+\tno\t1\t0.67\t0.0\t37.0\t4.4e-07\t!\tORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35\n+SEQ16\t-\tdataset_5036\t-\tcm\t1\t41\t25\t65\t+\tno\t1\t0.66\t0.0\t35.6\t8.9e-07\t!\tORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20\n+SEQ19\t-\tdataset_5036\t-\tcm\t1\t41\t26\t75\t+\tno\t1\t0.50\t0.0\t35.1\t1.2e-06\t!\tORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23\n+SEQ36\t-\tdataset_5036\t-\tcm\t1\t41\t26\t66\t+\tno\t1\t0.56\t0.0\t34.4\t1.6e-06\t!\tORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39\n+SEQ14\t-\tdataset_5036\t-\tcm\t1\t41\t26\t66\t+\tno\t1\t0.39\t0.0\t33.9\t2e-06\t!\tORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19\n+SEQ22\t-\tdataset_5036\t-\tcm\t1\t41\t26\t65\t+\tno\t1\t0.43\t0.0\t31.6\t5.9e-06\t!\tORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005_rep.26\n+SEQ39\t-\tdataset_5036\t-\tcm\t1\t41\t23\t62\t+\tno\t1\t0.45\t0.0\t26.1\t8.3e-05\t!\tORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005_rep.41\n+SEQ48\t-\tdataset_5036\t-\tcm\t1\t41\t24\t64\t+\tno\t1\t0.41\t0.0\t26.1\t8.5e-05\t!\tORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005_rep.7\n+SEQ29\t-\tdataset_5036\t-\tcm\t1\t41\t21\t59\t+\tno\t1\t0.44\t0.0\t24.3\t0.0002\t!\tORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005_rep.32\n+SEQ40\t-\tdataset_5036\t-\tcm\t1\t41\t20\t59\t+\tno\t1\t0.40\t0.0\t15.3\t0.015\t?\tORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005_rep.42\n' |
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| diff -r 4310ac018d05 -r 869a6e807d76 test-data/2.tabular --- a/test-data/2.tabular Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/2.tabular Wed Feb 22 16:51:06 2017 -0500 |
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| @@ -1,14 +1,33 @@ -SEQ82 - dataset_2088 - cm 1 80 1 81 + no 1 0.38 0.0 86.6 1.9e-28 ! ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 -SEQ76 - dataset_2088 - cm 1 80 1 79 + no 1 0.53 0.0 81.8 7.1e-27 ! ORIGID RF00641_rep.0_AL132709.5/95865-95787_76 ORIGHEAD RF00641_rep.0 -SEQ84 - dataset_2088 - cm 1 80 1 79 + no 1 0.41 0.0 79.8 3.2e-26 ! ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 -SEQ79 - dataset_2088 - cm 1 80 1 79 + no 1 0.38 0.0 76.7 3.4e-25 ! ORIGID RF00641_rep.12_AL132709.5/56006-55928_79 ORIGHEAD RF00641_rep.12 -SEQ89 - dataset_2088 - cm 1 80 1 80 + no 1 0.46 0.0 75.4 9e-25 ! ORIGID RF00641_rep.9_AL132709.5/98273-98194_89 ORIGHEAD RF00641_rep.9 -SEQ78 - dataset_2088 - cm 1 80 1 80 + no 1 0.43 0.0 74.4 2e-24 ! ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 -SEQ85 - dataset_2088 - cm 1 80 1 79 + no 1 0.35 0.0 73.2 5.1e-24 ! ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 -SEQ87 - dataset_2088 - cm 1 80 1 78 + no 1 0.38 0.0 72.1 1.2e-23 ! ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 -SEQ81 - dataset_2088 - cm 1 80 1 77 + no 1 0.35 0.0 70.3 4.6e-23 ! ORIGID RF00641_rep.1_AL132709.5/86350-86274_81 ORIGHEAD RF00641_rep.1 -SEQ86 - dataset_2088 - cm 1 80 1 79 + no 1 0.43 0.0 69.6 7.6e-23 ! ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 -SEQ88 - dataset_2088 - cm 1 80 1 81 + no 1 0.40 0.0 62.3 2e-20 ! ORIGID RF00641_rep.8_AL132709.5/61554-61474_88 ORIGHEAD RF00641_rep.8 -SEQ80 - dataset_2088 - cm 1 80 1 79 + no 1 0.53 0.0 57.6 6.6e-19 ! ORIGID RF00641_rep.13_AL132709.5/55165-55087_80 ORIGHEAD RF00641_rep.13 -SEQ77 - dataset_2088 - cm 1 80 1 77 + no 1 0.55 0.0 56.6 1.5e-18 ! ORIGID RF00641_rep.10_AADD01141100.1/2839-2915_77 ORIGHEAD RF00641_rep.10 -SEQ83 - dataset_2088 - cm 1 80 1 79 + no 1 0.44 0.0 18.8 4.2e-06 ! ORIGID RF00641_rep.3_AADD01141098.1/2614-2692_83 ORIGHEAD RF00641_rep.3 +SEQ32 - dataset_5037 - cm 1 48 26 73 + no 1 0.62 0.0 54.0 8.3e-10 ! ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 +SEQ31 - dataset_5037 - cm 1 48 26 73 + no 1 0.62 0.0 53.2 1.2e-09 ! ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 +SEQ9 - dataset_5037 - cm 1 48 26 73 + no 1 0.62 0.0 52.7 1.4e-09 ! ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 +SEQ28 - dataset_5037 - cm 1 48 25 71 + no 1 0.70 0.0 51.1 2.8e-09 ! ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 +SEQ11 - dataset_5037 - cm 1 48 26 82 + no 1 0.61 0.0 50.0 4.6e-09 ! ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 +SEQ15 - dataset_5037 - cm 1 48 26 73 + no 1 0.52 0.0 49.2 6.6e-09 ! ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1 +SEQ19 - dataset_5037 - cm 1 48 27 82 + no 1 0.52 0.0 49.1 6.9e-09 ! ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23 +SEQ50 - dataset_5037 - cm 1 48 26 73 + no 1 0.52 0.0 48.8 7.8e-09 ! ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9 +SEQ17 - dataset_5037 - cm 1 48 25 71 + no 1 0.66 0.0 48.2 9.8e-09 ! ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21 +SEQ23 - dataset_5037 - cm 1 48 27 74 + no 1 0.62 0.0 47.1 1.6e-08 ! ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27 +SEQ12 - dataset_5037 - cm 1 48 26 82 + no 1 0.56 0.0 47.0 1.7e-08 ! ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 +SEQ13 - dataset_5037 - cm 1 48 26 82 + no 1 0.54 0.0 46.5 2e-08 ! ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 +SEQ36 - dataset_5037 - cm 1 48 26 73 + no 1 0.54 0.0 46.5 2.1e-08 ! ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 +SEQ10 - dataset_5037 - cm 1 48 26 73 + no 1 0.58 0.0 45.6 3e-08 ! ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 +SEQ18 - dataset_5037 - cm 1 48 26 72 + no 1 0.62 0.0 45.5 3.1e-08 ! ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 +SEQ46 - dataset_5037 - cm 1 48 26 72 + no 1 0.72 0.0 45.5 3.2e-08 ! ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5 +SEQ21 - dataset_5037 - cm 1 48 27 74 + no 1 0.60 0.0 45.0 3.9e-08 ! ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 +SEQ24 - dataset_5037 - cm 1 48 26 73 + no 1 0.56 0.0 45.0 4e-08 ! ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28 +SEQ4 - dataset_5037 - cm 1 48 26 73 + no 1 0.54 0.0 44.8 4.4e-08 ! ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0 +SEQ33 - dataset_5037 - cm 1 48 26 72 + no 1 0.74 0.0 42.6 1.1e-07 ! ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 +SEQ45 - dataset_5037 - cm 1 48 25 72 + no 1 0.56 0.0 41.4 1.8e-07 ! ORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005_rep.4 +SEQ30 - dataset_5037 - cm 1 48 25 72 + no 1 0.65 0.0 41.2 2e-07 ! ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33 +SEQ20 - dataset_5037 - cm 1 48 25 72 + no 1 0.52 0.0 40.8 2.4e-07 ! ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24 +SEQ35 - dataset_5037 - cm 1 48 26 72 + no 1 0.70 0.0 40.7 2.5e-07 ! ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38 +SEQ16 - dataset_5037 - cm 1 48 25 72 + no 1 0.62 0.0 40.4 2.8e-07 ! ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20 +SEQ26 - dataset_5037 - cm 1 48 26 72 + no 1 0.51 0.0 39.4 4.4e-07 ! ORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005_rep.2 +SEQ5 - dataset_5037 - cm 1 48 26 72 + no 1 0.51 0.0 39.2 4.9e-07 ! ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10 +SEQ37 - dataset_5037 - cm 1 48 45 82 + no 1 0.63 0.0 32.4 9e-06 ! ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 +SEQ40 - dataset_5037 - cm 1 48 21 66 + no 1 0.46 0.0 30.4 2.1e-05 ! ORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005_rep.42 +SEQ7 - dataset_5037 - cm 1 48 45 83 + no 1 0.59 0.0 26.7 0.00011 ! ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 +SEQ43 - dataset_5037 - cm 1 48 27 71 + no 1 0.40 0.0 25.6 0.00017 ! ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 +SEQ14 - dataset_5037 - cm 1 48 26 73 + no 1 0.42 0.0 19.6 0.0022 ! ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19 +SEQ29 - dataset_5037 - cm 1 48 22 66 + no 1 0.40 0.0 15.5 0.013 ? ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005_rep.32 |
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| @@ -0,0 +1,30 @@ +SEQ42 - dataset_5038 - cm 1 50 1 50 + no 1 0.34 0.0 45.6 2.6e-16 ! ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005_rep.44 +SEQ38 - dataset_5038 - cm 1 50 1 50 + no 1 0.24 0.0 45.2 3.9e-16 ! ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005_rep.40 +SEQ44 - dataset_5038 - cm 1 50 1 51 + no 1 0.41 0.0 43.7 1.7e-15 ! ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005_rep.46 +SEQ6 - dataset_5038 - cm 1 50 1 51 + no 1 0.37 0.0 43.6 1.7e-15 ! ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005_rep.11 +SEQ41 - dataset_5038 - cm 1 50 1 50 + no 1 0.28 0.0 40.6 3.3e-14 ! ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 +SEQ8 - dataset_5038 - cm 1 50 1 48 + no 1 0.29 0.0 39.1 1.4e-13 ! ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005_rep.13 +SEQ47 - dataset_5038 - cm 1 50 2 50 + no 1 0.27 0.0 38.0 4e-13 ! ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 +SEQ48 - dataset_5038 - cm 1 50 1 52 + no 1 0.37 0.0 37.9 4.5e-13 ! ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005_rep.7 +SEQ49 - dataset_5038 - cm 1 50 1 50 + no 1 0.38 0.0 35.7 3.9e-12 ! ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005_rep.8 +SEQ43 - dataset_5038 - cm 1 50 1 52 + no 1 0.40 0.0 35.3 5.8e-12 ! ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 +SEQ20 - dataset_5038 - cm 1 50 1 48 + no 1 0.54 0.0 29.7 1.3e-09 ! ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24 +SEQ15 - dataset_5038 - cm 1 50 1 49 + no 1 0.49 0.0 29.2 2.1e-09 ! ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1 +SEQ50 - dataset_5038 - cm 1 50 1 53 + no 1 0.55 0.0 29.0 2.5e-09 ! ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9 +SEQ39 - dataset_5038 - cm 1 50 1 50 + no 1 0.36 0.0 28.6 3.7e-09 ! ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005_rep.41 +SEQ14 - dataset_5038 - cm 1 50 1 53 + no 1 0.42 0.0 27.9 7e-09 ! ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19 +SEQ4 - dataset_5038 - cm 1 50 1 53 + no 1 0.58 0.0 26.6 2.6e-08 ! ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0 +SEQ21 - dataset_5038 - cm 1 50 1 52 + no 1 0.56 0.0 24.0 3.2e-07 ! ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 +SEQ10 - dataset_5038 - cm 1 50 1 53 + no 1 0.58 0.0 23.2 7.4e-07 ! ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 +SEQ34 - dataset_5038 - cm 1 50 1 51 + no 1 0.35 0.0 22.2 1.9e-06 ! ORIGID RF00005_rep.37_AF347001.1/16015-15948_34 ORIGHEAD RF00005_rep.37 +SEQ23 - dataset_5038 - cm 1 50 2 54 + no 1 0.58 0.0 19.4 2.8e-05 ! ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27 +SEQ24 - dataset_5038 - cm 1 50 1 49 + no 1 0.55 0.0 18.8 5.3e-05 ! ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28 +SEQ27 - dataset_5038 - cm 1 50 1 50 + no 1 0.42 0.0 18.1 0.0001 ! ORIGID RF00005_rep.30_AL132988.4/95773-95841_27 ORIGHEAD RF00005_rep.30 +SEQ16 - dataset_5038 - cm 1 50 1 52 + no 1 0.62 0.0 16.9 0.00031 ! ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20 +SEQ29 - dataset_5038 - cm 1 50 1 49 + no 1 0.43 0.0 16.6 0.00044 ! ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005_rep.32 +SEQ33 - dataset_5038 - cm 1 50 2 53 + no 1 0.62 0.0 16.4 0.00051 ! ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 +SEQ9 - dataset_5038 - cm 1 50 1 49 + no 1 0.53 0.0 16.4 0.00054 ! ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 +SEQ36 - dataset_5038 - cm 1 50 6 49 + no 1 0.52 0.0 15.0 0.002 ! ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 +SEQ31 - dataset_5038 - cm 1 50 6 49 + no 1 0.55 0.0 14.5 0.0032 ! ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 +SEQ5 - dataset_5038 - cm 1 50 3 49 + no 1 0.49 0.0 13.7 0.0073 ! ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10 +SEQ32 - dataset_5038 - cm 1 50 1 49 + no 1 0.53 0.0 13.5 0.009 ! ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 |
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| @@ -0,0 +1,4 @@ +SEQ74 - dataset_5039 - cm 1 50 1 50 + no 1 0.52 0.0 86.4 6.3e-48 ! ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 +SEQ75 - dataset_5039 - cm 1 50 1 50 + no 1 0.44 0.0 83.9 1.3e-46 ! ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 +SEQ72 - dataset_5039 - cm 1 50 1 50 + no 1 0.50 0.0 82.8 5.2e-46 ! ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 +SEQ73 - dataset_5039 - cm 1 50 1 50 + no 1 0.48 0.0 79.7 2.1e-44 ! ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 |
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| @@ -0,0 +1,15 @@ +SEQ84 - dataset_5040 - cm 1 52 1 50 + no 1 0.40 0.0 37.2 3.7e-21 ! ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 +SEQ78 - dataset_5040 - cm 1 52 1 50 + no 1 0.44 0.0 36.0 3.2e-20 ! ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 +SEQ87 - dataset_5040 - cm 1 52 1 49 + no 1 0.41 0.0 32.1 2.5e-17 ! ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 +SEQ85 - dataset_5040 - cm 1 52 1 50 + no 1 0.38 0.0 31.3 1e-16 ! ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 +SEQ86 - dataset_5040 - cm 1 52 1 50 + no 1 0.42 0.0 31.2 1.2e-16 ! ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 +SEQ56 - dataset_5040 - cm 1 52 1 53 + no 1 0.42 0.0 30.0 9.3e-16 ! ORIGID RF00019_rep.1_L32608.1/283-377_56 ORIGHEAD RF00019_rep.1 +SEQ58 - dataset_5040 - cm 1 52 1 50 + no 1 0.38 0.0 28.0 3.4e-14 ! ORIGID RF00019_rep.3_AADD01087475.1/2469-2552_58 ORIGHEAD RF00019_rep.3 +SEQ47 - dataset_5040 - cm 1 52 3 53 + no 1 0.25 0.0 27.2 1.3e-13 ! ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 +SEQ82 - dataset_5040 - cm 1 52 1 51 + no 1 0.39 0.0 25.3 3.6e-12 ! ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 +SEQ76 - dataset_5040 - cm 1 52 1 49 + no 1 0.57 0.0 24.4 1.5e-11 ! ORIGID RF00641_rep.0_AL132709.5/95865-95787_76 ORIGHEAD RF00641_rep.0 +SEQ79 - dataset_5040 - cm 1 52 1 50 + no 1 0.42 0.0 22.6 3.5e-10 ! ORIGID RF00641_rep.12_AL132709.5/56006-55928_79 ORIGHEAD RF00641_rep.12 +SEQ88 - dataset_5040 - cm 1 52 1 51 + no 1 0.41 0.0 19.1 1.4e-07 ! ORIGID RF00641_rep.8_AL132709.5/61554-61474_88 ORIGHEAD RF00641_rep.8 +SEQ81 - dataset_5040 - cm 1 52 1 49 + no 1 0.37 0.0 18.2 7.4e-07 ! ORIGID RF00641_rep.1_AL132709.5/86350-86274_81 ORIGHEAD RF00641_rep.1 +SEQ89 - dataset_5040 - cm 1 52 1 50 + no 1 0.46 0.0 15.8 4.8e-05 ! ORIGID RF00641_rep.9_AL132709.5/98273-98194_89 ORIGHEAD RF00641_rep.9 +SEQ83 - dataset_5040 - cm 1 52 1 50 + no 1 0.38 0.0 14.8 0.00027 ! ORIGID RF00641_rep.3_AADD01141098.1/2614-2692_83 ORIGHEAD RF00641_rep.3 |
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| b'@@ -1,33 +1,33 @@\n-CLUSTER 1 CM_SCORE 84.9 MODEL 1.1 ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 \n-CLUSTER 1 CM_SCORE 84.9 MODEL 1.1 ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 \n-CLUSTER 1 CM_SCORE 83.8 MODEL 1.1 ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 \n-CLUSTER 1 CM_SCORE 82.5 MODEL 1.1 ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 \n-CLUSTER 1 CM_SCORE 82.4 MODEL 1.1 ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 \n-CLUSTER 1 CM_SCORE 81.0 MODEL 1.1 ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 \n-CLUSTER 1 CM_SCORE 80.9 MODEL 1.1 ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5 \n-CLUSTER 1 CM_SCORE 78.9 MODEL 1.1 ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21 \n-CLUSTER 1 CM_SCORE 76.6 MODEL 1.1 ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1 \n-CLUSTER 1 CM_SCORE 76.3 MODEL 1.1 ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27 \n-CLUSTER 1 CM_SCORE 74.7 MODEL 1.1 ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20 \n-CLUSTER 1 CM_SCORE 73.6 MODEL 1.1 ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 \n-CLUSTER 1 CM_SCORE 73.3 MODEL 1.1 ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 \n-CLUSTER 1 CM_SCORE 72.3 MODEL 1.1 ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33 \n-CLUSTER 1 CM_SCORE 71.7 MODEL 1.1 ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38 \n-CLUSTER 1 CM_SCORE 69.3 MODEL 1.1 ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 \n-CLUSTER 1 CM_SCORE 21.4 MODEL 1.1 ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005_rep.41 \n-CLUSTER 1 CM_SCORE 88.8 CMSEARCH 1.1 ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 \n-CLUSTER 1 CM_SCORE 87.5 CMSEARCH 1.1 ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 \n-CLUSTER 1 CM_SCORE 84.8 CMSEARCH 1.1 ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 \n-CLUSTER 1 CM_SCORE 80.0 CMSEARCH 1.1 ORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005_rep.2 \n-CLUSTER 1 CM_SCORE 79.6 CMSEARCH 1.1 ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10 \n-CLUSTER 1 CM_SCORE 79.0 CMSEARCH 1.1 ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28 \n-CLUSTER 1 CM_SCORE 78.5 CMSEARCH 1.1 ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 \n-CLUSTER 1 CM_SCORE 78.4 CMSEARCH 1.1 ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9 \n-CLUSTER 1 CM_SCORE 76.3 CMSEARCH 1.1 ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 \n-CLUSTER 1 CM_SCORE 75.1 CMSEARCH 1.1 ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0 \n-CLUSTER 1 CM_SCORE 73.3 CMSEARCH 1.1 ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24 \n-CLUSTER 1 CM_SCORE 69.4 CMSEARCH 1.1 ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23 \n-CLUSTER 1 CM_SCORE 69.3 CMSEARCH 1.1 ORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005_rep.4 \n-CLUSTER 1 CM_SCORE 47.8 CMSEARCH 1.1 ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005_rep.26 \n-CLUSTER 1 CM_SCORE 45.6 CMSEARCH 1.1 ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19 \n-CLUSTER 1 '..b'Q19#27#82#+ RESULT 1 CM_SCORE 49.1 MODEL 1.2 ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23 \n+SEQ50#26#73#+ RESULT 1 CM_SCORE 48.8 MODEL 1.2 ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9 \n+SEQ17#25#71#+ RESULT 1 CM_SCORE 48.2 MODEL 1.2 ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21 \n+SEQ23#27#74#+ RESULT 1 CM_SCORE 47.1 MODEL 1.2 ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27 \n+SEQ12#26#82#+ RESULT 1 CM_SCORE 47.0 MODEL 1.2 ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 \n+SEQ24#26#73#+ RESULT 1 CM_SCORE 45.0 MODEL 1.2 ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28 \n+SEQ21#27#74#+ RESULT 1 CM_SCORE 45.0 MODEL 1.2 ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 \n+SEQ37#27#75#+ RESULT 1 CM_SCORE 43.0 MODEL 1.1 ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 \n+SEQ26#26#65#+ RESULT 1 CM_SCORE 42.9 MODEL 1.1 ORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005_rep.2 \n+SEQ33#26#72#+ RESULT 1 CM_SCORE 42.6 MODEL 1.2 ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 \n+SEQ35#26#65#+ RESULT 1 CM_SCORE 42.0 MODEL 1.1 ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38 \n+SEQ45#25#72#+ RESULT 1 CM_SCORE 41.4 MODEL 1.2 ORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005_rep.4 \n+SEQ30#25#72#+ RESULT 1 CM_SCORE 41.2 MODEL 1.2 ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33 \n+SEQ20#25#72#+ RESULT 1 CM_SCORE 40.8 MODEL 1.2 ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24 \n+SEQ22#26#65#+ RESULT 1 CM_SCORE 31.6 MODEL 1.1 ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005_rep.26 \n+SEQ29#21#59#+ RESULT 1 CM_SCORE 24.3 MODEL 1.1 ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005_rep.32 \n+SEQ9#26#73#+ RESULT 1 CM_SCORE 52.7 CMSEARCH 1.2 ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 \n+SEQ11#26#82#+ RESULT 1 CM_SCORE 50.0 CMSEARCH 1.2 ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 \n+SEQ36#26#73#+ RESULT 1 CM_SCORE 46.5 CMSEARCH 1.2 ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 \n+SEQ13#26#82#+ RESULT 1 CM_SCORE 46.5 CMSEARCH 1.2 ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 \n+SEQ10#26#73#+ RESULT 1 CM_SCORE 45.6 CMSEARCH 1.2 ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 \n+SEQ46#26#72#+ RESULT 1 CM_SCORE 45.5 CMSEARCH 1.2 ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5 \n+SEQ18#26#72#+ RESULT 1 CM_SCORE 45.5 CMSEARCH 1.2 ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 \n+SEQ4#26#73#+ RESULT 1 CM_SCORE 44.8 CMSEARCH 1.2 ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0 \n+SEQ5#26#65#+ RESULT 1 CM_SCORE 43.3 CMSEARCH 1.1 ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10 \n+SEQ16#25#72#+ RESULT 1 CM_SCORE 40.4 CMSEARCH 1.2 ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20 \n+SEQ7#27#76#+ RESULT 1 CM_SCORE 39.0 CMSEARCH 1.1 ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 \n+SEQ14#26#66#+ RESULT 1 CM_SCORE 33.9 CMSEARCH 1.1 ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19 \n+SEQ40#21#66#+ RESULT 1 CM_SCORE 30.4 CMSEARCH 1.2 ORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005_rep.42 \n' |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/1.cluster.all.fa --- a/test-data/RESULTS/1.cluster.all.fa Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/1.cluster.all.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| b'@@ -1,66 +1,66 @@\n->SEQ22_1_72_+ RESULT 1 SCORE 47.8 EVALUE 3.6e-23 CLUSTER 1.1 LOC ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005_rep.26\n-UAGGAUGGGGUGUGAUAGGUGGCACGGAGAAUUUUGGAUUCUCAGGGAUGGGUUCGAUUCUCAUAGUCCUAG\n->SEQ37_1_82_+ RESULT 1 SCORE 84.9 EVALUE 3.4e-37 CLUSTER 1.1 LOC ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3\n-GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA\n->SEQ23_1_74_+ RESULT 1 SCORE 76.3 EVALUE 5.7e-34 CLUSTER 1.1 LOC ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27\n-GGCCGGUUAGCUCAGUUGGUUAGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCA\n->SEQ50_1_73_+ RESULT 1 SCORE 78.4 EVALUE 9.1e-35 CLUSTER 1.1 LOC ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9\n-GCCCGGAUAGCUCAGUCGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCG\n->SEQ39_1_69_+ RESULT 1 SCORE 21.4 EVALUE 3.5e-13 CLUSTER 1.1 LOC ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005_rep.41\n-GUUCUUGUAGUUGAAAUACAACGAUGGUUUUUCAUAUCAUUGGUCGUGGUUGUAGUCCGUGCGAGAAUA\n->SEQ46_1_72_+ RESULT 1 SCORE 80.9 EVALUE 1.1e-35 CLUSTER 1.1 LOC ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5\n-UCCCUGGUGGUCUAGUGGUUAGGAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA\n->SEQ17_1_71_+ RESULT 1 SCORE 78.9 EVALUE 6.2e-35 CLUSTER 1.1 LOC ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21\n-GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUCCCACGCGGGAGACCCGGGUUCAAUUCCCGGCCAAUGCA\n->SEQ24_1_73_+ RESULT 1 SCORE 79.0 EVALUE 5.6e-35 CLUSTER 1.1 LOC ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28\n-CCUUCGAUAGCUCAGCUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGA\n->SEQ7_1_83_+ RESULT 1 SCORE 81.0 EVALUE 9.6e-36 CLUSTER 1.1 LOC ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12\n-GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUUCUGACA\n->SEQ32_1_73_+ RESULT 1 SCORE 82.5 EVALUE 2.6e-36 CLUSTER 1.1 LOC ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35\n-GUUUCCGUAGUGUAGCGGUUAUCACAUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA\n->SEQ20_1_72_+ RESULT 1 SCORE 73.3 EVALUE 8.3e-33 CLUSTER 1.1 LOC ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24\n-GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU\n->SEQ36_1_73_+ RESULT 1 SCORE 78.5 EVALUE 8.3e-35 CLUSTER 1.1 LOC ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39\n-GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCUGGAUCAAAACCAGGCGGAAACA\n->SEQ10_1_73_+ RESULT 1 SCORE 73.3 EVALUE 8.3e-33 CLUSTER 1.1 LOC ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15\n-GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG\n->SEQ28_1_71_+ RESULT 1 SCORE 82.4 EVALUE 3e-36 CLUSTER 1.1 LOC ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31\n-GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA\n->SEQ35_1_72_+ RESULT 1 SCORE 71.7 EVALUE 3.2e-32 CLUSTER 1.1 LOC ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38\n-UCCCUGGUGGUCUAGUGGCUAGGAUUCGGCGCUUUCACCGCCGCGCCCCGGGUUCGAUUCCCGGCCAGGAAU\n->SEQ21_1_74_+ RESULT 1 SCORE 76.3 EVALUE 5.7e-34 CLUSTER 1.1 LOC ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25\n-GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG\n->SEQ16_1_72_+ RESULT 1 SCORE 74.7 EVALUE 2.3e-33 CLUSTER 1.1 LOC ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20\n-GGGGAUGUAGCUCAGUGGUAGAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCA\n->SEQ30_1_72_+ RESULT 1 SCORE 72.3 EVALUE 1.9e-32 CLUSTER 1.1 LOC ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33\n-GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC\n->SEQ12_1_82_+ RESULT 1 SCORE 84.8 EVALUE 3.7e-37 CLUSTER 1.1 LOC ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17\n-GUAGUCGU'..b' SCORE 51.1 EVALUE 2.8e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31\n+UCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA\n+>SEQ30_25_72_+ RESULT 1 SCORE 41.2 EVALUE 2e-07 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33\n+UCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC\n+>SEQ9_26_73_+ RESULT 1 SCORE 52.7 EVALUE 1.4e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14\n+GUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCA\n+>SEQ37_27_75_+ RESULT 1 SCORE 43.0 EVALUE 2.6e-08 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3\n+GCUGGAUUUAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACC\n+>SEQ15_26_73_+ RESULT 1 SCORE 49.2 EVALUE 6.6e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1\n+GUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCA\n+>SEQ32_26_73_+ RESULT 1 SCORE 54.0 EVALUE 8.3e-10 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35\n+AUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA\n+>SEQ12_26_82_+ RESULT 1 SCORE 47.0 EVALUE 1.7e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17\n+GAUGGACUUGAAAUCCAUUGGGGUUUCCCCGCGCAGGUUCGAAUCCUGUCGGCUACG\n+>SEQ46_26_72_+ RESULT 1 SCORE 45.5 EVALUE 3.2e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5\n+UCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA\n+>SEQ24_26_73_+ RESULT 1 SCORE 45.0 EVALUE 4e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28\n+GGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGA\n+>SEQ18_26_72_+ RESULT 1 SCORE 45.5 EVALUE 3.1e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22\n+AGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA\n+>SEQ10_26_73_+ RESULT 1 SCORE 45.6 EVALUE 3e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15\n+AUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG\n+>SEQ21_27_74_+ RESULT 1 SCORE 45.0 EVALUE 3.9e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25\n+GUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG\n+>SEQ19_27_82_+ RESULT 1 SCORE 49.1 EVALUE 6.9e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23\n+AGCAGACUCUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCCCCCACCA\n+>SEQ14_26_66_+ RESULT 1 SCORE 33.9 EVALUE 2e-06 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19\n+GCUUAGCUGUUAACUAAGUGUUUGUGGGUUUAAGUCCCAUU\n+>SEQ13_26_82_+ RESULT 1 SCORE 46.5 EVALUE 2e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18\n+GAUGGACUAGAAAUCCAUUGGGGUUUCCCCACGCAGGUUCGAAUCCUGCCGACUACG\n+>SEQ20_25_72_+ RESULT 1 SCORE 40.8 EVALUE 2.4e-07 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24\n+AUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU\n+>SEQ40_21_66_+ RESULT 1 SCORE 30.4 EVALUE 2.1e-05 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005_rep.42\n+AUUGAAUUGCAAAUUCGAAGAAGCAGCUUCAAACCUGCCGGGGCUU\n+>SEQ4_26_73_+ RESULT 1 SCORE 44.8 EVALUE 4.4e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0\n+ACUGGUCUUGUAAACCAGGGGUCGCGAGUUCAAUUCUCGCUGGGGCUU\n+>SEQ50_26_73_+ RESULT 1 SCORE 48.8 EVALUE 7.8e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9\n+AUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCG\n+>SEQ16_25_72_+ RESULT 1 SCORE 40.4 EVALUE 2.8e-07 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20\n+GCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCA\n+>SEQ29_21_59_+ RESULT 1 SCORE 24.3 EVALUE 0.0002 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005_rep.32\n+CAUUGGACUGUAAAUCUAAAGACAGGGGUUAGGCCUCUU\n' |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/1.cluster.part --- a/test-data/RESULTS/1.cluster.part Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/1.cluster.part Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,33 +1,33 @@ -SEQ22#1#72#+ 47.8 3.6e-23 1.1 1.1 1 -SEQ37#1#82#+ 84.9 3.4e-37 1.1 1.1 1 -SEQ23#1#74#+ 76.3 5.7e-34 1.1 1.1 1 -SEQ50#1#73#+ 78.4 9.1e-35 1.1 1.1 1 -SEQ39#1#69#+ 21.4 3.5e-13 1.1 1.1 1 -SEQ46#1#72#+ 80.9 1.1e-35 1.1 1.1 1 -SEQ17#1#71#+ 78.9 6.2e-35 1.1 1.1 1 -SEQ24#1#73#+ 79.0 5.6e-35 1.1 1.1 1 -SEQ7#1#83#+ 81.0 9.6e-36 1.1 1.1 1 -SEQ32#1#73#+ 82.5 2.6e-36 1.1 1.1 1 -SEQ20#1#72#+ 73.3 8.3e-33 1.1 1.1 1 -SEQ36#1#73#+ 78.5 8.3e-35 1.1 1.1 1 -SEQ10#1#73#+ 73.3 8.3e-33 1.1 1.1 1 -SEQ28#1#71#+ 82.4 3e-36 1.1 1.1 1 -SEQ35#1#72#+ 71.7 3.2e-32 1.1 1.1 1 -SEQ21#1#74#+ 76.3 5.7e-34 1.1 1.1 1 -SEQ16#1#72#+ 74.7 2.3e-33 1.1 1.1 1 -SEQ30#1#72#+ 72.3 1.9e-32 1.1 1.1 1 -SEQ12#1#82#+ 84.8 3.7e-37 1.1 1.1 1 -SEQ33#1#72#+ 69.3 2.5e-31 1.1 1.1 1 -SEQ19#1#82#+ 69.4 2.5e-31 1.1 1.1 1 -SEQ15#1#73#+ 76.6 4.5e-34 1.1 1.1 1 -SEQ45#1#72#+ 69.3 2.7e-31 1.1 1.1 1 -SEQ14#2#72#+ 45.6 2.5e-22 1.1 1.1 1 -SEQ18#1#72#+ 73.6 6.2e-33 1.1 1.1 1 -SEQ9#1#73#+ 83.8 8.7e-37 1.1 1.1 1 -SEQ5#1#72#+ 79.6 3.2e-35 1.1 1.1 1 -SEQ11#1#82#+ 88.8 1.1e-38 1.1 1.1 1 -SEQ29#1#66#+ 34.4 4.1e-18 1.1 1.1 1 -SEQ26#1#72#+ 80.0 2.4e-35 1.1 1.1 1 -SEQ4#1#73#+ 75.1 1.7e-33 1.1 1.1 1 -SEQ13#1#82#+ 87.5 3.5e-38 1.1 1.1 1 -SEQ31#1#73#+ 84.9 3.1e-37 1.1 1.1 1 +SEQ36#26#73#+ 46.5 2.1e-08 1.1 1.2 1 +SEQ11#26#82#+ 50.0 4.6e-09 1.1 1.2 1 +SEQ35#26#65#+ 42.0 4.1e-08 1.1 1.1 1 +SEQ23#27#74#+ 47.1 1.6e-08 1.1 1.2 1 +SEQ45#25#72#+ 41.4 1.8e-07 1.1 1.2 1 +SEQ17#25#71#+ 48.2 9.8e-09 1.1 1.2 1 +SEQ31#26#73#+ 53.2 1.2e-09 1.1 1.2 1 +SEQ5#26#65#+ 43.3 2.2e-08 1.1 1.1 1 +SEQ33#26#72#+ 42.6 1.1e-07 1.1 1.2 1 +SEQ7#27#76#+ 39.0 1.8e-07 1.1 1.1 1 +SEQ26#26#65#+ 42.9 2.6e-08 1.1 1.1 1 +SEQ22#26#65#+ 31.6 5.9e-06 1.1 1.1 1 +SEQ28#25#71#+ 51.1 2.8e-09 1.1 1.2 1 +SEQ30#25#72#+ 41.2 2e-07 1.1 1.2 1 +SEQ9#26#73#+ 52.7 1.4e-09 1.1 1.2 1 +SEQ37#27#75#+ 43.0 2.6e-08 1.1 1.1 1 +SEQ15#26#73#+ 49.2 6.6e-09 1.1 1.2 1 +SEQ32#26#73#+ 54.0 8.3e-10 1.1 1.2 1 +SEQ12#26#82#+ 47.0 1.7e-08 1.1 1.2 1 +SEQ46#26#72#+ 45.5 3.2e-08 1.1 1.2 1 +SEQ24#26#73#+ 45.0 4e-08 1.1 1.2 1 +SEQ18#26#72#+ 45.5 3.1e-08 1.1 1.2 1 +SEQ10#26#73#+ 45.6 3e-08 1.1 1.2 1 +SEQ21#27#74#+ 45.0 3.9e-08 1.1 1.2 1 +SEQ19#27#82#+ 49.1 6.9e-09 1.1 1.2 1 +SEQ14#26#66#+ 33.9 2e-06 1.1 1.1 1 +SEQ13#26#82#+ 46.5 2e-08 1.1 1.2 1 +SEQ20#25#72#+ 40.8 2.4e-07 1.1 1.2 1 +SEQ40#21#66#+ 30.4 2.1e-05 1.1 1.2 1 +SEQ4#26#73#+ 44.8 4.4e-08 1.1 1.2 1 +SEQ50#26#73#+ 48.8 7.8e-09 1.1 1.2 1 +SEQ16#25#72#+ 40.4 2.8e-07 1.1 1.2 1 +SEQ29#21#59#+ 24.3 0.0002 1.1 1.1 1 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/1.cluster.stats --- a/test-data/RESULTS/1.cluster.stats Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/1.cluster.stats Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,1 +1,1 @@ -CLUSTER 1 SEQS 33 IDS_UNIQUE 33 MODELS 1 +CLUSTER 1 SEQS 33 IDS_UNIQUE 33 MODELS 2 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/1.cluster.top5.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/1.cluster.top5.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,10 @@ +>SEQ32_26_73_+ RESULT 1 SCORE 54.0 EVALUE 8.3e-10 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 +AUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA +>SEQ31_26_73_+ RESULT 1 SCORE 53.2 EVALUE 1.2e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 +GUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA +>SEQ9_26_73_+ RESULT 1 SCORE 52.7 EVALUE 1.4e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 +GUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCA +>SEQ28_25_71_+ RESULT 1 SCORE 51.1 EVALUE 2.8e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 +UCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA +>SEQ11_26_82_+ RESULT 1 SCORE 50.0 EVALUE 4.6e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 +GUUGGACUUGAAAUCCAAUGGGGUCUCCCCGCGCAGGUUCGAACCCUGCUCGCUGCG |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/2.cluster.all --- a/test-data/RESULTS/2.cluster.all Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/2.cluster.all Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,13 +1,12 @@ -CLUSTER 2 CM_SCORE 86.6 MODEL 1.2 ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 -CLUSTER 2 CM_SCORE 79.8 MODEL 1.2 ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 -CLUSTER 2 CM_SCORE 76.7 MODEL 1.2 ORIGID RF00641_rep.12_AL132709.5/56006-55928_79 ORIGHEAD RF00641_rep.12 -CLUSTER 2 CM_SCORE 75.4 MODEL 1.2 ORIGID RF00641_rep.9_AL132709.5/98273-98194_89 ORIGHEAD RF00641_rep.9 -CLUSTER 2 CM_SCORE 74.4 MODEL 1.2 ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 -CLUSTER 2 CM_SCORE 73.2 MODEL 1.2 ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 -CLUSTER 2 CM_SCORE 72.1 MODEL 1.2 ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 -CLUSTER 2 CM_SCORE 70.3 MODEL 1.2 ORIGID RF00641_rep.1_AL132709.5/86350-86274_81 ORIGHEAD RF00641_rep.1 -CLUSTER 2 CM_SCORE 69.6 MODEL 1.2 ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 -CLUSTER 2 CM_SCORE 62.3 MODEL 1.2 ORIGID RF00641_rep.8_AL132709.5/61554-61474_88 ORIGHEAD RF00641_rep.8 -CLUSTER 2 CM_SCORE 57.6 MODEL 1.2 ORIGID RF00641_rep.13_AL132709.5/55165-55087_80 ORIGHEAD RF00641_rep.13 -CLUSTER 2 CM_SCORE 81.8 CMSEARCH 1.2 ORIGID RF00641_rep.0_AL132709.5/95865-95787_76 ORIGHEAD RF00641_rep.0 -CLUSTER 2 CM_SCORE 56.6 CMSEARCH 1.2 ORIGID RF00641_rep.10_AADD01141100.1/2839-2915_77 ORIGHEAD RF00641_rep.10 +SEQ44#1#51#+ RESULT 2 CM_SCORE 43.7 MODEL 1.3 ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005_rep.46 +SEQ8#1#48#+ RESULT 2 CM_SCORE 39.1 MODEL 1.3 ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005_rep.13 +SEQ47#2#50#+ RESULT 2 CM_SCORE 38.0 MODEL 1.3 ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 +SEQ48#1#52#+ RESULT 2 CM_SCORE 37.9 MODEL 1.3 ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005_rep.7 +SEQ43#1#52#+ RESULT 2 CM_SCORE 35.3 MODEL 1.3 ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 +SEQ39#1#50#+ RESULT 2 CM_SCORE 28.6 MODEL 1.3 ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005_rep.41 +SEQ34#1#51#+ RESULT 2 CM_SCORE 22.2 MODEL 1.3 ORIGID RF00005_rep.37_AF347001.1/16015-15948_34 ORIGHEAD RF00005_rep.37 +SEQ42#1#50#+ RESULT 2 CM_SCORE 45.6 CMSEARCH 1.3 ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005_rep.44 +SEQ38#1#50#+ RESULT 2 CM_SCORE 45.2 CMSEARCH 1.3 ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005_rep.40 +SEQ6#1#51#+ RESULT 2 CM_SCORE 43.6 CMSEARCH 1.3 ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005_rep.11 +SEQ41#1#50#+ RESULT 2 CM_SCORE 40.6 CMSEARCH 1.3 ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 +SEQ49#1#50#+ RESULT 2 CM_SCORE 35.7 CMSEARCH 1.3 ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005_rep.8 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/2.cluster.all.fa --- a/test-data/RESULTS/2.cluster.all.fa Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/2.cluster.all.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,26 +1,24 @@ ->SEQ79_1_79_+ RESULT 2 SCORE 76.7 EVALUE 3.4e-25 CLUSTER 1.2 LOC ORIGID RF00641_rep.12_AL132709.5/56006-55928_79 ORIGHEAD RF00641_rep.12 -GGUACUUGAAGGGAGAUCGACCGUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUUGAUCUUUUCUCAGUAUC ->SEQ85_1_79_+ RESULT 2 SCORE 73.2 EVALUE 5.1e-24 CLUSTER 1.2 LOC ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 -GGUGCUUAAAGAAUGGCUGUCCGUAGUAUGGUCUCUAUAUUUAUGAUGAUUAAUAUCGGACAACCAUUGUUUUAGUAUC ->SEQ87_1_78_+ RESULT 2 SCORE 72.1 EVALUE 1.2e-23 CLUSTER 1.2 LOC ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 -GGUACCUGAAAUAGGUUGCCUGUGAGGUGUUCACUUUCUAUAUGAUGAAUAUUAUACAGUCAACCUCUUUCCGAUAUC ->SEQ82_1_81_+ RESULT 2 SCORE 86.6 EVALUE 1.9e-28 CLUSTER 1.2 LOC ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 -GAUACUCGAAGGAGAGGUUGUCCGUGUUGUCUUCUCUUUAUUUAUGAUGAAACAUACACGGGAAACCUCUUUUUUAGUAUC ->SEQ77_1_77_+ RESULT 2 SCORE 56.6 EVALUE 1.5e-18 CLUSTER 1.2 LOC ORIGID RF00641_rep.10_AADD01141100.1/2839-2915_77 ORIGHEAD RF00641_rep.10 -GGUACUCGGGGAGAGGUUACCCGAGCAACUUUGCAUCUGGACGACGAAUGUUGCUCGGUGAACCCCUUUUCGGUAUC ->SEQ80_1_79_+ RESULT 2 SCORE 57.6 EVALUE 6.6e-19 CLUSTER 1.2 LOC ORIGID RF00641_rep.13_AL132709.5/55165-55087_80 ORIGHEAD RF00641_rep.13 -GGUGCCUGAGGAGAGGUGGCCUGUGUUGCAUUCACAGAAAUCAUGACACACAAGACACGAGCGGCCUCUCUUCAGUAUC ->SEQ81_1_77_+ RESULT 2 SCORE 70.3 EVALUE 4.6e-23 CLUSTER 1.2 LOC ORIGID RF00641_rep.1_AL132709.5/86350-86274_81 ORIGHEAD RF00641_rep.1 -GGUACUGGAGGAGAGGUUAUCUGUGUUUUUUCCCUUUAUUUAUGAUGAAAAAUAUGGUGCACUUCUAUUUGAGAAUC ->SEQ78_1_80_+ RESULT 2 SCORE 74.4 EVALUE 2e-24 CLUSTER 1.2 LOC ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 -GGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUGUGACGUAGGACACAUGGUCUACUUCUUCUCAAUAUC ->SEQ76_1_79_+ RESULT 2 SCORE 81.8 EVALUE 7.1e-27 CLUSTER 1.2 LOC ORIGID RF00641_rep.0_AL132709.5/95865-95787_76 ORIGHEAD RF00641_rep.0 -GGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUUAUUUAUGGCGCACAUUACACGGUCGACCUCUUUGCAGUAUC ->SEQ86_1_79_+ RESULT 2 SCORE 69.6 EVALUE 7.6e-23 CLUSTER 1.2 LOC ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 -GGUACUUAAGGGGGAGGUGGGCUUUGAAUAAUAAGUUUAUUGACGUGGAAUAUACAAGGGCAAGCUCUCUGUGAGUAUC ->SEQ89_1_80_+ RESULT 2 SCORE 75.4 EVALUE 9e-25 CLUSTER 1.2 LOC ORIGID RF00641_rep.9_AL132709.5/98273-98194_89 ORIGHEAD RF00641_rep.9 -GGUACUUGGAGAGAUAGUAGACCGUAUAGCGUACGCUUUAUCUGUGACGUAUGUAACACGGUCCACUAACCCUCAGUAUC ->SEQ88_1_81_+ RESULT 2 SCORE 62.3 EVALUE 2e-20 CLUSTER 1.2 LOC ORIGID RF00641_rep.8_AL132709.5/61554-61474_88 ORIGHEAD RF00641_rep.8 -GGUACUGGUGGAGAGGUCUUCCAUGAUGCAUUCGAUUUAUUUUUUGACCAAUCCUACAUAGUGGACUCUUUUGAAAGCAUU ->SEQ84_1_79_+ RESULT 2 SCORE 79.8 EVALUE 3.2e-26 CLUSTER 1.2 LOC ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 -GGUACUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUCGGUACU +>SEQ34_1_51_+ RESULT 2 SCORE 22.2 EVALUE 1.9e-06 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.37_AF347001.1/16015-15948_34 ORIGHEAD RF00005_rep.37 +CAGAGAAUAGUUUAAAUUAGAAUCUUAGCUUUGGGUGCUAAUGGUGGAGUU +>SEQ41_1_50_+ RESULT 2 SCORE 40.6 EVALUE 3.3e-14 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 +ACUCUUUUAGUAUAAAUAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC +>SEQ47_2_50_+ RESULT 2 SCORE 38.0 EVALUE 4e-13 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 +AGGUAUUAGAAAAACCAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGC +>SEQ42_1_50_+ RESULT 2 SCORE 45.6 EVALUE 2.6e-16 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005_rep.44 +GUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC +>SEQ39_1_50_+ RESULT 2 SCORE 28.6 EVALUE 3.7e-09 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005_rep.41 +GUUCUUGUAGUUGAAAUACAACGAUGGUUUUUCAUAUCAUUGGUCGUGGU +>SEQ43_1_52_+ RESULT 2 SCORE 35.3 EVALUE 5.8e-12 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 +GUUUAUGUAGCUUACCUCCUCAAAGCAAUACACUGAAAAUGUUUAGACGGGC +>SEQ49_1_50_+ RESULT 2 SCORE 35.7 EVALUE 3.9e-12 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005_rep.8 +AGAAAUUUAGGUUAAAUACAGACCAAGAGCCUUCAAAGCCCUCAGUAAGU +>SEQ44_1_51_+ RESULT 2 SCORE 43.7 EVALUE 1.7e-15 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005_rep.46 +CAGAGUGUAGCUUAACACAAAGCACCCAACUUACACUUAGGAGAUUUCAAC +>SEQ8_1_48_+ RESULT 2 SCORE 39.1 EVALUE 1.4e-13 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005_rep.13 +CACUGUAAAGCUAACUUAGCAUUAACCUUUUAAGUUAAAGAUUAAGAG +>SEQ6_1_51_+ RESULT 2 SCORE 43.6 EVALUE 1.7e-15 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005_rep.11 +GUCCUUGUAGUAUAAACUAAUACACCAGUCUUGUAAACCGGAGAUGAAAAC +>SEQ38_1_50_+ RESULT 2 SCORE 45.2 EVALUE 3.9e-16 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005_rep.40 +UGGUAUAUAGUUUAAACAAAACGAAUGAUUUCGACUCAUUAAAUUAUGAU +>SEQ48_1_52_+ RESULT 2 SCORE 37.9 EVALUE 4.5e-13 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005_rep.7 +ACUUUUAAAGGAUAACAGCUAUCCAUUGGUCUUAGGCCCCAAAAAUUUUGGU |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/2.cluster.part --- a/test-data/RESULTS/2.cluster.part Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/2.cluster.part Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,13 +1,12 @@ -SEQ79#1#79#+ 76.7 3.4e-25 1.2 1.2 2 -SEQ85#1#79#+ 73.2 5.1e-24 1.2 1.2 2 -SEQ87#1#78#+ 72.1 1.2e-23 1.2 1.2 2 -SEQ82#1#81#+ 86.6 1.9e-28 1.2 1.2 2 -SEQ77#1#77#+ 56.6 1.5e-18 1.2 1.2 2 -SEQ80#1#79#+ 57.6 6.6e-19 1.2 1.2 2 -SEQ81#1#77#+ 70.3 4.6e-23 1.2 1.2 2 -SEQ78#1#80#+ 74.4 2e-24 1.2 1.2 2 -SEQ76#1#79#+ 81.8 7.1e-27 1.2 1.2 2 -SEQ86#1#79#+ 69.6 7.6e-23 1.2 1.2 2 -SEQ89#1#80#+ 75.4 9e-25 1.2 1.2 2 -SEQ88#1#81#+ 62.3 2e-20 1.2 1.2 2 -SEQ84#1#79#+ 79.8 3.2e-26 1.2 1.2 2 +SEQ34#1#51#+ 22.2 1.9e-06 1.3 1.3 2 +SEQ41#1#50#+ 40.6 3.3e-14 1.3 1.3 2 +SEQ47#2#50#+ 38.0 4e-13 1.3 1.3 2 +SEQ42#1#50#+ 45.6 2.6e-16 1.3 1.3 2 +SEQ39#1#50#+ 28.6 3.7e-09 1.3 1.3 2 +SEQ43#1#52#+ 35.3 5.8e-12 1.3 1.3 2 +SEQ49#1#50#+ 35.7 3.9e-12 1.3 1.3 2 +SEQ44#1#51#+ 43.7 1.7e-15 1.3 1.3 2 +SEQ8#1#48#+ 39.1 1.4e-13 1.3 1.3 2 +SEQ6#1#51#+ 43.6 1.7e-15 1.3 1.3 2 +SEQ38#1#50#+ 45.2 3.9e-16 1.3 1.3 2 +SEQ48#1#52#+ 37.9 4.5e-13 1.3 1.3 2 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/2.cluster.stats --- a/test-data/RESULTS/2.cluster.stats Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/2.cluster.stats Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,1 +1,1 @@ -CLUSTER 2 SEQS 13 IDS_UNIQUE 13 MODELS 1 +CLUSTER 2 SEQS 12 IDS_UNIQUE 12 MODELS 1 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/2.cluster.top5.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/2.cluster.top5.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,10 @@ +>SEQ42_1_50_+ RESULT 2 SCORE 45.6 EVALUE 2.6e-16 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005_rep.44 +GUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC +>SEQ38_1_50_+ RESULT 2 SCORE 45.2 EVALUE 3.9e-16 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005_rep.40 +UGGUAUAUAGUUUAAACAAAACGAAUGAUUUCGACUCAUUAAAUUAUGAU +>SEQ44_1_51_+ RESULT 2 SCORE 43.7 EVALUE 1.7e-15 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005_rep.46 +CAGAGUGUAGCUUAACACAAAGCACCCAACUUACACUUAGGAGAUUUCAAC +>SEQ6_1_51_+ RESULT 2 SCORE 43.6 EVALUE 1.7e-15 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005_rep.11 +GUCCUUGUAGUAUAAACUAAUACACCAGUCUUGUAAACCGGAGAUGAAAAC +>SEQ41_1_50_+ RESULT 2 SCORE 40.6 EVALUE 3.3e-14 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 +ACUCUUUUAGUAUAAAUAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/3.cluster.all --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/3.cluster.all Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,4 @@ +SEQ74#1#50#+ RESULT 3 CM_SCORE 86.4 MODEL 1.4 ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 +SEQ72#1#50#+ RESULT 3 CM_SCORE 82.8 MODEL 1.4 ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 +SEQ73#1#50#+ RESULT 3 CM_SCORE 79.7 MODEL 1.4 ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 +SEQ75#1#50#+ RESULT 3 CM_SCORE 83.9 CMSEARCH 1.4 ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/3.cluster.all.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/3.cluster.all.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,8 @@ +>SEQ75_1_50_+ RESULT 3 SCORE 83.9 EVALUE 1.3e-46 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCUAAUGAGUGCAUAAUGAGG +>SEQ73_1_50_+ RESULT 3 SCORE 79.7 EVALUE 2.1e-44 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAAGAGCAUGUAGUGAGG +>SEQ74_1_50_+ RESULT 3 SCORE 86.4 EVALUE 6.3e-48 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 +ACCAUCCUUUUCUUGGGGUUGCGCUACUGUCCAAUGAGCGCAUAGUGAGG +>SEQ72_1_50_+ RESULT 3 SCORE 82.8 EVALUE 5.2e-46 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAUGGGUACCUAGUGAGG |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/3.cluster.part --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/3.cluster.part Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,4 @@ +SEQ75#1#50#+ 83.9 1.3e-46 1.4 1.4 3 +SEQ73#1#50#+ 79.7 2.1e-44 1.4 1.4 3 +SEQ74#1#50#+ 86.4 6.3e-48 1.4 1.4 3 +SEQ72#1#50#+ 82.8 5.2e-46 1.4 1.4 3 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/3.cluster.stats --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/3.cluster.stats Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,1 @@ +CLUSTER 3 SEQS 4 IDS_UNIQUE 4 MODELS 1 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/3.cluster.top5.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/3.cluster.top5.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,8 @@ +>SEQ74_1_50_+ RESULT 3 SCORE 86.4 EVALUE 6.3e-48 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 +ACCAUCCUUUUCUUGGGGUUGCGCUACUGUCCAAUGAGCGCAUAGUGAGG +>SEQ75_1_50_+ RESULT 3 SCORE 83.9 EVALUE 1.3e-46 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCUAAUGAGUGCAUAAUGAGG +>SEQ72_1_50_+ RESULT 3 SCORE 82.8 EVALUE 5.2e-46 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAUGGGUACCUAGUGAGG +>SEQ73_1_50_+ RESULT 3 SCORE 79.7 EVALUE 2.1e-44 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAAGAGCAUGUAGUGAGG |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/4.cluster.all --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/4.cluster.all Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,10 @@ +SEQ84#1#50#+ RESULT 4 CM_SCORE 37.2 MODEL 1.5 ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 +SEQ85#1#50#+ RESULT 4 CM_SCORE 31.3 MODEL 1.5 ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 +SEQ86#1#50#+ RESULT 4 CM_SCORE 31.2 MODEL 1.5 ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 +SEQ82#1#51#+ RESULT 4 CM_SCORE 25.3 MODEL 1.5 ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 +SEQ76#1#49#+ RESULT 4 CM_SCORE 24.4 MODEL 1.5 ORIGID RF00641_rep.0_AL132709.5/95865-95787_76 ORIGHEAD RF00641_rep.0 +SEQ78#1#50#+ RESULT 4 CM_SCORE 36.0 CMSEARCH 1.5 ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 +SEQ87#1#49#+ RESULT 4 CM_SCORE 32.1 CMSEARCH 1.5 ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 +SEQ56#1#53#+ RESULT 4 CM_SCORE 30.0 CMSEARCH 1.5 ORIGID RF00019_rep.1_L32608.1/283-377_56 ORIGHEAD RF00019_rep.1 +SEQ58#1#50#+ RESULT 4 CM_SCORE 28.0 CMSEARCH 1.5 ORIGID RF00019_rep.3_AADD01087475.1/2469-2552_58 ORIGHEAD RF00019_rep.3 +SEQ79#1#50#+ RESULT 4 CM_SCORE 22.6 CMSEARCH 1.5 ORIGID RF00641_rep.12_AL132709.5/56006-55928_79 ORIGHEAD RF00641_rep.12 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/4.cluster.all.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/4.cluster.all.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,20 @@ +>SEQ87_1_49_+ RESULT 4 SCORE 32.1 EVALUE 2.5e-17 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 +GGUACCUGAAAUAGGUUGCCUGUGAGGUGUUCACUUUCUAUAUGAUGAA +>SEQ84_1_50_+ RESULT 4 SCORE 37.2 EVALUE 3.7e-21 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 +GGUACUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAG +>SEQ79_1_50_+ RESULT 4 SCORE 22.6 EVALUE 3.5e-10 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.12_AL132709.5/56006-55928_79 ORIGHEAD RF00641_rep.12 +GGUACUUGAAGGGAGAUCGACCGUGUUAUAUUCGCUUUAUUGACUUCGAA +>SEQ86_1_50_+ RESULT 4 SCORE 31.2 EVALUE 1.2e-16 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 +GGUACUUAAGGGGGAGGUGGGCUUUGAAUAAUAAGUUUAUUGACGUGGAA +>SEQ85_1_50_+ RESULT 4 SCORE 31.3 EVALUE 1e-16 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 +GGUGCUUAAAGAAUGGCUGUCCGUAGUAUGGUCUCUAUAUUUAUGAUGAU +>SEQ82_1_51_+ RESULT 4 SCORE 25.3 EVALUE 3.6e-12 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 +GAUACUCGAAGGAGAGGUUGUCCGUGUUGUCUUCUCUUUAUUUAUGAUGAA +>SEQ58_1_50_+ RESULT 4 SCORE 28.0 EVALUE 3.4e-14 CLUSTER 1.5 LOC MISS ORIGID RF00019_rep.3_AADD01087475.1/2469-2552_58 ORIGHEAD RF00019_rep.3 +AGUUGGUCCGAGUGUUGUGGGUUAUUGUUAAGUUGAUUUAACAUUGUCUC +>SEQ78_1_50_+ RESULT 4 SCORE 36.0 EVALUE 3.2e-20 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 +GGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUGUGACGU +>SEQ76_1_49_+ RESULT 4 SCORE 24.4 EVALUE 1.5e-11 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.0_AL132709.5/95865-95787_76 ORIGHEAD RF00641_rep.0 +GGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUUAUUUAUGGCGC +>SEQ56_1_53_+ RESULT 4 SCORE 30.0 EVALUE 9.3e-16 CLUSTER 1.5 LOC MISS ORIGID RF00019_rep.1_L32608.1/283-377_56 ORIGHEAD RF00019_rep.1 +GGCUGGUCCGAUGGUAGUGGGUUAUCAGAACUUAUUAACAUUAGUGUCACUAA |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/4.cluster.part --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/4.cluster.part Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,10 @@ +SEQ87#1#49#+ 32.1 2.5e-17 1.5 1.5 4 +SEQ84#1#50#+ 37.2 3.7e-21 1.5 1.5 4 +SEQ79#1#50#+ 22.6 3.5e-10 1.5 1.5 4 +SEQ86#1#50#+ 31.2 1.2e-16 1.5 1.5 4 +SEQ85#1#50#+ 31.3 1e-16 1.5 1.5 4 +SEQ82#1#51#+ 25.3 3.6e-12 1.5 1.5 4 +SEQ58#1#50#+ 28.0 3.4e-14 1.5 1.5 4 +SEQ78#1#50#+ 36.0 3.2e-20 1.5 1.5 4 +SEQ76#1#49#+ 24.4 1.5e-11 1.5 1.5 4 +SEQ56#1#53#+ 30.0 9.3e-16 1.5 1.5 4 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/4.cluster.stats --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/4.cluster.stats Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,1 @@ +CLUSTER 4 SEQS 10 IDS_UNIQUE 10 MODELS 1 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/4.cluster.top5.fa --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/4.cluster.top5.fa Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,10 @@ +>SEQ84_1_50_+ RESULT 4 SCORE 37.2 EVALUE 3.7e-21 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 +GGUACUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAG +>SEQ78_1_50_+ RESULT 4 SCORE 36.0 EVALUE 3.2e-20 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 +GGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUGUGACGU +>SEQ87_1_49_+ RESULT 4 SCORE 32.1 EVALUE 2.5e-17 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 +GGUACCUGAAAUAGGUUGCCUGUGAGGUGUUCACUUUCUAUAUGAUGAA +>SEQ85_1_50_+ RESULT 4 SCORE 31.3 EVALUE 1e-16 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 +GGUGCUUAAAGAAUGGCUGUCCGUAGUAUGGUCUCUAUAUUUAUGAUGAU +>SEQ86_1_50_+ RESULT 4 SCORE 31.2 EVALUE 1.2e-16 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 +GGUACUUAAGGGGGAGGUGGGCUUUGAAUAAUAAGUUUAUUGACGUGGAA |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/cluster.final.stats --- a/test-data/RESULTS/cluster.final.stats Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/cluster.final.stats Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,2 +1,4 @@ -CLUSTER 1 SEQS 33 IDS_UNIQUE 33 MODELS 1 -CLUSTER 2 SEQS 13 IDS_UNIQUE 13 MODELS 1 +CLUSTER 1 SEQS 33 IDS_UNIQUE 33 MODELS 2 +CLUSTER 2 SEQS 12 IDS_UNIQUE 12 MODELS 1 +CLUSTER 3 SEQS 4 IDS_UNIQUE 4 MODELS 1 +CLUSTER 4 SEQS 10 IDS_UNIQUE 10 MODELS 1 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/evaluation.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/RESULTS/evaluation.txt Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -0,0 +1,5 @@ +completeness_score : 0.617828515133 +homogeneity_score : 0.967645117225 +adjusted_rand_score : 0.590908231597 +adjusted_mutual_info_score : 0.460249315397 +v_measure_score : 0.754145302388 \ No newline at end of file |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/fullTab.tabular --- a/test-data/RESULTS/fullTab.tabular Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/fullTab.tabular Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -31,62 +31,62 @@ RF00005 1 RF00005 1 RF00005 1 -RF00641 2 -RF00641 2 -RF00641 2 -RF00641 2 -RF00641 2 -RF00641 2 -RF00641 2 -RF00641 2 -RF00641 2 -RF00641 2 -RF00641 2 -RF00641 2 -RF00641 2 -RF00001 3 -RF00001 4 +RF00005 2 +RF00005 2 +RF00005 2 +RF00005 2 +RF00005 2 +RF00005 2 +RF00005 2 +RF00005 2 +RF00005 2 +RF00005 2 +RF00005 2 +RF00005 2 +RF00618 3 +RF00618 3 +RF00618 3 +RF00618 3 +RF00641 4 +RF00641 4 +RF00641 4 +RF00641 4 +RF00641 4 +RF00641 4 +RF00641 4 +RF00019 4 +RF00019 4 +RF00641 4 RF00001 5 -RF00005 6 -RF00005 7 +RF00001 6 +RF00001 7 RF00005 8 RF00005 9 -RF00005 10 -RF00005 11 -RF00005 12 -RF00005 13 -RF00005 14 -RF00005 15 -RF00005 16 -RF00005 17 -RF00005 18 -RF00005 19 -RF00006 20 -RF00006 21 -RF00006 22 -RF00006 23 -RF00019 24 -RF00019 25 -RF00019 26 -RF00019 27 -RF00027 28 -RF00027 29 -RF00027 30 -RF00031 31 -RF00031 32 -RF00031 33 -RF00031 34 -RF00031 35 -RF00031 36 -RF00031 37 -RF00049 38 -RF00049 39 -RF00049 40 -RF00618 41 -RF00618 42 -RF00618 43 -RF00618 44 -RF00641 45 -RF00693 46 -RF00693 47 -RF00693 48 +RF00006 10 +RF00006 11 +RF00006 12 +RF00006 13 +RF00019 14 +RF00019 15 +RF00027 16 +RF00027 17 +RF00027 18 +RF00031 19 +RF00031 20 +RF00031 21 +RF00031 22 +RF00031 23 +RF00031 24 +RF00031 25 +RF00049 26 +RF00049 27 +RF00049 28 +RF00641 29 +RF00641 30 +RF00641 31 +RF00641 32 +RF00641 33 +RF00641 34 +RF00693 35 +RF00693 36 +RF00693 37 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/partitions/final_overlap.map --- a/test-data/RESULTS/partitions/final_overlap.map Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/partitions/final_overlap.map Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,2 +1,4 @@ -1.1 1.1 -1.2 1.2 +1.1 1.1 1.2 +1.3 1.3 +1.4 1.4 +1.5 1.5 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/partitions/final_overlap.matrix --- a/test-data/RESULTS/partitions/final_overlap.matrix Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/partitions/final_overlap.matrix Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,4 +1,7 @@ -# MODEL 1.1 1.2 -MODEL CLASS 0 0 -1.1 0 0 0 -1.2 0 0 0 +# MODEL 1.1 1.2 1.3 1.4 1.5 +MODEL CLASS 0 0 0 0 0 +1.1 0 0 0.9(29/34) 0.3(9/34) 0 0 +1.2 0 0.9(29/31) 0 0.2(5/31) 0 0 +1.3 0 0.5(9/19) 0.3(5/19) 0 0 0.1(1/19) +1.4 0 0 0 0 0 0 +1.5 0 0 0 0.1(1/11) 0 0 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/partitions/final_partition.hard.best --- a/test-data/RESULTS/partitions/final_partition.hard.best Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/partitions/final_partition.hard.best Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,46 +1,59 @@ -SEQ11#1#82#+ 88.8 1.1e-38 1.1 1.1 1 -SEQ13#1#82#+ 87.5 3.5e-38 1.1 1.1 1 -SEQ31#1#73#+ 84.9 3.1e-37 1.1 1.1 1 -SEQ37#1#82#+ 84.9 3.4e-37 1.1 1.1 1 -SEQ12#1#82#+ 84.8 3.7e-37 1.1 1.1 1 -SEQ9#1#73#+ 83.8 8.7e-37 1.1 1.1 1 -SEQ32#1#73#+ 82.5 2.6e-36 1.1 1.1 1 -SEQ28#1#71#+ 82.4 3e-36 1.1 1.1 1 -SEQ7#1#83#+ 81.0 9.6e-36 1.1 1.1 1 -SEQ46#1#72#+ 80.9 1.1e-35 1.1 1.1 1 -SEQ26#1#72#+ 80.0 2.4e-35 1.1 1.1 1 -SEQ5#1#72#+ 79.6 3.2e-35 1.1 1.1 1 -SEQ24#1#73#+ 79.0 5.6e-35 1.1 1.1 1 -SEQ17#1#71#+ 78.9 6.2e-35 1.1 1.1 1 -SEQ36#1#73#+ 78.5 8.3e-35 1.1 1.1 1 -SEQ50#1#73#+ 78.4 9.1e-35 1.1 1.1 1 -SEQ15#1#73#+ 76.6 4.5e-34 1.1 1.1 1 -SEQ21#1#74#+ 76.3 5.7e-34 1.1 1.1 1 -SEQ23#1#74#+ 76.3 5.7e-34 1.1 1.1 1 -SEQ4#1#73#+ 75.1 1.7e-33 1.1 1.1 1 -SEQ16#1#72#+ 74.7 2.3e-33 1.1 1.1 1 -SEQ18#1#72#+ 73.6 6.2e-33 1.1 1.1 1 -SEQ10#1#73#+ 73.3 8.3e-33 1.1 1.1 1 -SEQ20#1#72#+ 73.3 8.3e-33 1.1 1.1 1 -SEQ30#1#72#+ 72.3 1.9e-32 1.1 1.1 1 -SEQ35#1#72#+ 71.7 3.2e-32 1.1 1.1 1 -SEQ19#1#82#+ 69.4 2.5e-31 1.1 1.1 1 -SEQ33#1#72#+ 69.3 2.5e-31 1.1 1.1 1 -SEQ45#1#72#+ 69.3 2.7e-31 1.1 1.1 1 -SEQ22#1#72#+ 47.8 3.6e-23 1.1 1.1 1 -SEQ14#2#72#+ 45.6 2.5e-22 1.1 1.1 1 -SEQ29#1#66#+ 34.4 4.1e-18 1.1 1.1 1 -SEQ39#1#69#+ 21.4 3.5e-13 1.1 1.1 1 -SEQ82#1#81#+ 86.6 1.9e-28 1.2 1.2 2 -SEQ76#1#79#+ 81.8 7.1e-27 1.2 1.2 2 -SEQ84#1#79#+ 79.8 3.2e-26 1.2 1.2 2 -SEQ79#1#79#+ 76.7 3.4e-25 1.2 1.2 2 -SEQ89#1#80#+ 75.4 9e-25 1.2 1.2 2 -SEQ78#1#80#+ 74.4 2e-24 1.2 1.2 2 -SEQ85#1#79#+ 73.2 5.1e-24 1.2 1.2 2 -SEQ87#1#78#+ 72.1 1.2e-23 1.2 1.2 2 -SEQ81#1#77#+ 70.3 4.6e-23 1.2 1.2 2 -SEQ86#1#79#+ 69.6 7.6e-23 1.2 1.2 2 -SEQ88#1#81#+ 62.3 2e-20 1.2 1.2 2 -SEQ80#1#79#+ 57.6 6.6e-19 1.2 1.2 2 -SEQ77#1#77#+ 56.6 1.5e-18 1.2 1.2 2 +SEQ5#26#65#+ 43.3 2.2e-08 1.1 1.1 1 +SEQ37#27#75#+ 43.0 2.6e-08 1.1 1.1 1 +SEQ26#26#65#+ 42.9 2.6e-08 1.1 1.1 1 +SEQ35#26#65#+ 42.0 4.1e-08 1.1 1.1 1 +SEQ7#27#76#+ 39.0 1.8e-07 1.1 1.1 1 +SEQ14#26#66#+ 33.9 2e-06 1.1 1.1 1 +SEQ22#26#65#+ 31.6 5.9e-06 1.1 1.1 1 +SEQ29#21#59#+ 24.3 0.0002 1.1 1.1 1 +SEQ32#26#73#+ 54.0 8.3e-10 1.2 1.2 2 +SEQ31#26#73#+ 53.2 1.2e-09 1.2 1.2 2 +SEQ9#26#73#+ 52.7 1.4e-09 1.2 1.2 2 +SEQ28#25#71#+ 51.1 2.8e-09 1.2 1.2 2 +SEQ11#26#82#+ 50.0 4.6e-09 1.2 1.2 2 +SEQ15#26#73#+ 49.2 6.6e-09 1.2 1.2 2 +SEQ19#27#82#+ 49.1 6.9e-09 1.2 1.2 2 +SEQ50#26#73#+ 48.8 7.8e-09 1.2 1.2 2 +SEQ17#25#71#+ 48.2 9.8e-09 1.2 1.2 2 +SEQ23#27#74#+ 47.1 1.6e-08 1.2 1.2 2 +SEQ12#26#82#+ 47.0 1.7e-08 1.2 1.2 2 +SEQ13#26#82#+ 46.5 2e-08 1.2 1.2 2 +SEQ36#26#73#+ 46.5 2.1e-08 1.2 1.2 2 +SEQ10#26#73#+ 45.6 3e-08 1.2 1.2 2 +SEQ18#26#72#+ 45.5 3.1e-08 1.2 1.2 2 +SEQ46#26#72#+ 45.5 3.2e-08 1.2 1.2 2 +SEQ21#27#74#+ 45.0 3.9e-08 1.2 1.2 2 +SEQ24#26#73#+ 45.0 4e-08 1.2 1.2 2 +SEQ4#26#73#+ 44.8 4.4e-08 1.2 1.2 2 +SEQ33#26#72#+ 42.6 1.1e-07 1.2 1.2 2 +SEQ45#25#72#+ 41.4 1.8e-07 1.2 1.2 2 +SEQ30#25#72#+ 41.2 2e-07 1.2 1.2 2 +SEQ20#25#72#+ 40.8 2.4e-07 1.2 1.2 2 +SEQ16#25#72#+ 40.4 2.8e-07 1.2 1.2 2 +SEQ40#21#66#+ 30.4 2.1e-05 1.2 1.2 2 +SEQ42#1#50#+ 45.6 2.6e-16 1.3 1.3 3 +SEQ38#1#50#+ 45.2 3.9e-16 1.3 1.3 3 +SEQ44#1#51#+ 43.7 1.7e-15 1.3 1.3 3 +SEQ6#1#51#+ 43.6 1.7e-15 1.3 1.3 3 +SEQ41#1#50#+ 40.6 3.3e-14 1.3 1.3 3 +SEQ8#1#48#+ 39.1 1.4e-13 1.3 1.3 3 +SEQ47#2#50#+ 38.0 4e-13 1.3 1.3 3 +SEQ48#1#52#+ 37.9 4.5e-13 1.3 1.3 3 +SEQ49#1#50#+ 35.7 3.9e-12 1.3 1.3 3 +SEQ43#1#52#+ 35.3 5.8e-12 1.3 1.3 3 +SEQ39#1#50#+ 28.6 3.7e-09 1.3 1.3 3 +SEQ34#1#51#+ 22.2 1.9e-06 1.3 1.3 3 +SEQ74#1#50#+ 86.4 6.3e-48 1.4 1.4 4 +SEQ75#1#50#+ 83.9 1.3e-46 1.4 1.4 4 +SEQ72#1#50#+ 82.8 5.2e-46 1.4 1.4 4 +SEQ73#1#50#+ 79.7 2.1e-44 1.4 1.4 4 +SEQ84#1#50#+ 37.2 3.7e-21 1.5 1.5 5 +SEQ78#1#50#+ 36.0 3.2e-20 1.5 1.5 5 +SEQ87#1#49#+ 32.1 2.5e-17 1.5 1.5 5 +SEQ85#1#50#+ 31.3 1e-16 1.5 1.5 5 +SEQ86#1#50#+ 31.2 1.2e-16 1.5 1.5 5 +SEQ56#1#53#+ 30.0 9.3e-16 1.5 1.5 5 +SEQ58#1#50#+ 28.0 3.4e-14 1.5 1.5 5 +SEQ82#1#51#+ 25.3 3.6e-12 1.5 1.5 5 +SEQ76#1#49#+ 24.4 1.5e-11 1.5 1.5 5 +SEQ79#1#50#+ 22.6 3.5e-10 1.5 1.5 5 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/partitions/final_partition.hard.merged --- a/test-data/RESULTS/partitions/final_partition.hard.merged Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/partitions/final_partition.hard.merged Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,46 +1,59 @@ -SEQ11#1#82#+ 88.8 1.1e-38 1.1 1.1 1 -SEQ13#1#82#+ 87.5 3.5e-38 1.1 1.1 1 -SEQ31#1#73#+ 84.9 3.1e-37 1.1 1.1 1 -SEQ37#1#82#+ 84.9 3.4e-37 1.1 1.1 1 -SEQ12#1#82#+ 84.8 3.7e-37 1.1 1.1 1 -SEQ9#1#73#+ 83.8 8.7e-37 1.1 1.1 1 -SEQ32#1#73#+ 82.5 2.6e-36 1.1 1.1 1 -SEQ28#1#71#+ 82.4 3e-36 1.1 1.1 1 -SEQ7#1#83#+ 81.0 9.6e-36 1.1 1.1 1 -SEQ46#1#72#+ 80.9 1.1e-35 1.1 1.1 1 -SEQ26#1#72#+ 80.0 2.4e-35 1.1 1.1 1 -SEQ5#1#72#+ 79.6 3.2e-35 1.1 1.1 1 -SEQ24#1#73#+ 79.0 5.6e-35 1.1 1.1 1 -SEQ17#1#71#+ 78.9 6.2e-35 1.1 1.1 1 -SEQ36#1#73#+ 78.5 8.3e-35 1.1 1.1 1 -SEQ50#1#73#+ 78.4 9.1e-35 1.1 1.1 1 -SEQ15#1#73#+ 76.6 4.5e-34 1.1 1.1 1 -SEQ21#1#74#+ 76.3 5.7e-34 1.1 1.1 1 -SEQ23#1#74#+ 76.3 5.7e-34 1.1 1.1 1 -SEQ4#1#73#+ 75.1 1.7e-33 1.1 1.1 1 -SEQ16#1#72#+ 74.7 2.3e-33 1.1 1.1 1 -SEQ18#1#72#+ 73.6 6.2e-33 1.1 1.1 1 -SEQ10#1#73#+ 73.3 8.3e-33 1.1 1.1 1 -SEQ20#1#72#+ 73.3 8.3e-33 1.1 1.1 1 -SEQ30#1#72#+ 72.3 1.9e-32 1.1 1.1 1 -SEQ35#1#72#+ 71.7 3.2e-32 1.1 1.1 1 -SEQ19#1#82#+ 69.4 2.5e-31 1.1 1.1 1 -SEQ33#1#72#+ 69.3 2.5e-31 1.1 1.1 1 -SEQ45#1#72#+ 69.3 2.7e-31 1.1 1.1 1 -SEQ22#1#72#+ 47.8 3.6e-23 1.1 1.1 1 -SEQ14#2#72#+ 45.6 2.5e-22 1.1 1.1 1 -SEQ29#1#66#+ 34.4 4.1e-18 1.1 1.1 1 -SEQ39#1#69#+ 21.4 3.5e-13 1.1 1.1 1 -SEQ82#1#81#+ 86.6 1.9e-28 1.2 1.2 2 -SEQ76#1#79#+ 81.8 7.1e-27 1.2 1.2 2 -SEQ84#1#79#+ 79.8 3.2e-26 1.2 1.2 2 -SEQ79#1#79#+ 76.7 3.4e-25 1.2 1.2 2 -SEQ89#1#80#+ 75.4 9e-25 1.2 1.2 2 -SEQ78#1#80#+ 74.4 2e-24 1.2 1.2 2 -SEQ85#1#79#+ 73.2 5.1e-24 1.2 1.2 2 -SEQ87#1#78#+ 72.1 1.2e-23 1.2 1.2 2 -SEQ81#1#77#+ 70.3 4.6e-23 1.2 1.2 2 -SEQ86#1#79#+ 69.6 7.6e-23 1.2 1.2 2 -SEQ88#1#81#+ 62.3 2e-20 1.2 1.2 2 -SEQ80#1#79#+ 57.6 6.6e-19 1.2 1.2 2 -SEQ77#1#77#+ 56.6 1.5e-18 1.2 1.2 2 +SEQ32#26#73#+ 54.0 8.3e-10 1.1 1.2 1 +SEQ31#26#73#+ 53.2 1.2e-09 1.1 1.2 1 +SEQ9#26#73#+ 52.7 1.4e-09 1.1 1.2 1 +SEQ28#25#71#+ 51.1 2.8e-09 1.1 1.2 1 +SEQ11#26#82#+ 50.0 4.6e-09 1.1 1.2 1 +SEQ15#26#73#+ 49.2 6.6e-09 1.1 1.2 1 +SEQ19#27#82#+ 49.1 6.9e-09 1.1 1.2 1 +SEQ50#26#73#+ 48.8 7.8e-09 1.1 1.2 1 +SEQ17#25#71#+ 48.2 9.8e-09 1.1 1.2 1 +SEQ23#27#74#+ 47.1 1.6e-08 1.1 1.2 1 +SEQ12#26#82#+ 47.0 1.7e-08 1.1 1.2 1 +SEQ13#26#82#+ 46.5 2e-08 1.1 1.2 1 +SEQ36#26#73#+ 46.5 2.1e-08 1.1 1.2 1 +SEQ10#26#73#+ 45.6 3e-08 1.1 1.2 1 +SEQ18#26#72#+ 45.5 3.1e-08 1.1 1.2 1 +SEQ46#26#72#+ 45.5 3.2e-08 1.1 1.2 1 +SEQ21#27#74#+ 45.0 3.9e-08 1.1 1.2 1 +SEQ24#26#73#+ 45.0 4e-08 1.1 1.2 1 +SEQ4#26#73#+ 44.8 4.4e-08 1.1 1.2 1 +SEQ5#26#65#+ 43.3 2.2e-08 1.1 1.1 1 +SEQ37#27#75#+ 43.0 2.6e-08 1.1 1.1 1 +SEQ26#26#65#+ 42.9 2.6e-08 1.1 1.1 1 +SEQ33#26#72#+ 42.6 1.1e-07 1.1 1.2 1 +SEQ35#26#65#+ 42.0 4.1e-08 1.1 1.1 1 +SEQ45#25#72#+ 41.4 1.8e-07 1.1 1.2 1 +SEQ30#25#72#+ 41.2 2e-07 1.1 1.2 1 +SEQ20#25#72#+ 40.8 2.4e-07 1.1 1.2 1 +SEQ16#25#72#+ 40.4 2.8e-07 1.1 1.2 1 +SEQ7#27#76#+ 39.0 1.8e-07 1.1 1.1 1 +SEQ14#26#66#+ 33.9 2e-06 1.1 1.1 1 +SEQ22#26#65#+ 31.6 5.9e-06 1.1 1.1 1 +SEQ40#21#66#+ 30.4 2.1e-05 1.1 1.2 1 +SEQ29#21#59#+ 24.3 0.0002 1.1 1.1 1 +SEQ42#1#50#+ 45.6 2.6e-16 1.3 1.3 2 +SEQ38#1#50#+ 45.2 3.9e-16 1.3 1.3 2 +SEQ44#1#51#+ 43.7 1.7e-15 1.3 1.3 2 +SEQ6#1#51#+ 43.6 1.7e-15 1.3 1.3 2 +SEQ41#1#50#+ 40.6 3.3e-14 1.3 1.3 2 +SEQ8#1#48#+ 39.1 1.4e-13 1.3 1.3 2 +SEQ47#2#50#+ 38.0 4e-13 1.3 1.3 2 +SEQ48#1#52#+ 37.9 4.5e-13 1.3 1.3 2 +SEQ49#1#50#+ 35.7 3.9e-12 1.3 1.3 2 +SEQ43#1#52#+ 35.3 5.8e-12 1.3 1.3 2 +SEQ39#1#50#+ 28.6 3.7e-09 1.3 1.3 2 +SEQ34#1#51#+ 22.2 1.9e-06 1.3 1.3 2 +SEQ74#1#50#+ 86.4 6.3e-48 1.4 1.4 3 +SEQ75#1#50#+ 83.9 1.3e-46 1.4 1.4 3 +SEQ72#1#50#+ 82.8 5.2e-46 1.4 1.4 3 +SEQ73#1#50#+ 79.7 2.1e-44 1.4 1.4 3 +SEQ84#1#50#+ 37.2 3.7e-21 1.5 1.5 4 +SEQ78#1#50#+ 36.0 3.2e-20 1.5 1.5 4 +SEQ87#1#49#+ 32.1 2.5e-17 1.5 1.5 4 +SEQ85#1#50#+ 31.3 1e-16 1.5 1.5 4 +SEQ86#1#50#+ 31.2 1.2e-16 1.5 1.5 4 +SEQ56#1#53#+ 30.0 9.3e-16 1.5 1.5 4 +SEQ58#1#50#+ 28.0 3.4e-14 1.5 1.5 4 +SEQ82#1#51#+ 25.3 3.6e-12 1.5 1.5 4 +SEQ76#1#49#+ 24.4 1.5e-11 1.5 1.5 4 +SEQ79#1#50#+ 22.6 3.5e-10 1.5 1.5 4 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/partitions/final_partition.soft --- a/test-data/RESULTS/partitions/final_partition.soft Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/partitions/final_partition.soft Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,46 +1,99 @@ -SEQ11#1#82#+ 88.8 1.1e-38 1.1 1.1 1 -SEQ13#1#82#+ 87.5 3.5e-38 1.1 1.1 1 -SEQ31#1#73#+ 84.9 3.1e-37 1.1 1.1 1 -SEQ37#1#82#+ 84.9 3.4e-37 1.1 1.1 1 -SEQ12#1#82#+ 84.8 3.7e-37 1.1 1.1 1 -SEQ9#1#73#+ 83.8 8.7e-37 1.1 1.1 1 -SEQ32#1#73#+ 82.5 2.6e-36 1.1 1.1 1 -SEQ28#1#71#+ 82.4 3e-36 1.1 1.1 1 -SEQ7#1#83#+ 81.0 9.6e-36 1.1 1.1 1 -SEQ46#1#72#+ 80.9 1.1e-35 1.1 1.1 1 -SEQ26#1#72#+ 80.0 2.4e-35 1.1 1.1 1 -SEQ5#1#72#+ 79.6 3.2e-35 1.1 1.1 1 -SEQ24#1#73#+ 79.0 5.6e-35 1.1 1.1 1 -SEQ17#1#71#+ 78.9 6.2e-35 1.1 1.1 1 -SEQ36#1#73#+ 78.5 8.3e-35 1.1 1.1 1 -SEQ50#1#73#+ 78.4 9.1e-35 1.1 1.1 1 -SEQ15#1#73#+ 76.6 4.5e-34 1.1 1.1 1 -SEQ21#1#74#+ 76.3 5.7e-34 1.1 1.1 1 -SEQ23#1#74#+ 76.3 5.7e-34 1.1 1.1 1 -SEQ4#1#73#+ 75.1 1.7e-33 1.1 1.1 1 -SEQ16#1#72#+ 74.7 2.3e-33 1.1 1.1 1 -SEQ18#1#72#+ 73.6 6.2e-33 1.1 1.1 1 -SEQ10#1#73#+ 73.3 8.3e-33 1.1 1.1 1 -SEQ20#1#72#+ 73.3 8.3e-33 1.1 1.1 1 -SEQ30#1#72#+ 72.3 1.9e-32 1.1 1.1 1 -SEQ35#1#72#+ 71.7 3.2e-32 1.1 1.1 1 -SEQ19#1#82#+ 69.4 2.5e-31 1.1 1.1 1 -SEQ33#1#72#+ 69.3 2.5e-31 1.1 1.1 1 -SEQ45#1#72#+ 69.3 2.7e-31 1.1 1.1 1 -SEQ22#1#72#+ 47.8 3.6e-23 1.1 1.1 1 -SEQ14#2#72#+ 45.6 2.5e-22 1.1 1.1 1 -SEQ29#1#66#+ 34.4 4.1e-18 1.1 1.1 1 -SEQ39#1#69#+ 21.4 3.5e-13 1.1 1.1 1 -SEQ82#1#81#+ 86.6 1.9e-28 1.2 1.2 2 -SEQ76#1#79#+ 81.8 7.1e-27 1.2 1.2 2 -SEQ84#1#79#+ 79.8 3.2e-26 1.2 1.2 2 -SEQ79#1#79#+ 76.7 3.4e-25 1.2 1.2 2 -SEQ89#1#80#+ 75.4 9e-25 1.2 1.2 2 -SEQ78#1#80#+ 74.4 2e-24 1.2 1.2 2 -SEQ85#1#79#+ 73.2 5.1e-24 1.2 1.2 2 -SEQ87#1#78#+ 72.1 1.2e-23 1.2 1.2 2 -SEQ81#1#77#+ 70.3 4.6e-23 1.2 1.2 2 -SEQ86#1#79#+ 69.6 7.6e-23 1.2 1.2 2 -SEQ88#1#81#+ 62.3 2e-20 1.2 1.2 2 -SEQ80#1#79#+ 57.6 6.6e-19 1.2 1.2 2 -SEQ77#1#77#+ 56.6 1.5e-18 1.2 1.2 2 +SEQ24#26#66#+ 44.3 1.4e-08 1.1 1.1 1 +SEQ15#26#66#+ 44.1 1.5e-08 1.1 1.1 1 +SEQ46#26#65#+ 43.5 2.1e-08 1.1 1.1 1 +SEQ5#26#65#+ 43.3 2.2e-08 1.1 1.1 1 +SEQ37#27#75#+ 43.0 2.6e-08 1.1 1.1 1 +SEQ26#26#65#+ 42.9 2.6e-08 1.1 1.1 1 +SEQ35#26#65#+ 42.0 4.1e-08 1.1 1.1 1 +SEQ50#25#66#+ 40.8 7.3e-08 1.1 1.1 1 +SEQ11#26#75#+ 40.5 8.4e-08 1.1 1.1 1 +SEQ13#26#75#+ 40.0 1.1e-07 1.1 1.1 1 +SEQ21#27#67#+ 40.0 1.1e-07 1.1 1.1 1 +SEQ12#26#75#+ 39.8 1.2e-07 1.1 1.1 1 +SEQ28#25#64#+ 39.7 1.2e-07 1.1 1.1 1 +SEQ18#25#65#+ 39.4 1.4e-07 1.1 1.1 1 +SEQ33#26#65#+ 39.4 1.5e-07 1.1 1.1 1 +SEQ4#25#66#+ 39.3 1.5e-07 1.1 1.1 1 +SEQ31#26#66#+ 39.2 1.6e-07 1.1 1.1 1 +SEQ9#26#66#+ 39.2 1.6e-07 1.1 1.1 1 +SEQ7#27#76#+ 39.0 1.8e-07 1.1 1.1 1 +SEQ17#25#64#+ 38.7 2e-07 1.1 1.1 1 +SEQ23#27#67#+ 38.6 2.1e-07 1.1 1.1 1 +SEQ20#24#65#+ 38.2 2.6e-07 1.1 1.1 1 +SEQ10#25#66#+ 37.5 3.6e-07 1.1 1.1 1 +SEQ30#25#65#+ 37.4 3.8e-07 1.1 1.1 1 +SEQ45#25#65#+ 37.4 3.7e-07 1.1 1.1 1 +SEQ32#25#66#+ 37.0 4.4e-07 1.1 1.1 1 +SEQ16#25#65#+ 35.6 8.9e-07 1.1 1.1 1 +SEQ19#26#75#+ 35.1 1.2e-06 1.1 1.1 1 +SEQ36#26#66#+ 34.4 1.6e-06 1.1 1.1 1 +SEQ14#26#66#+ 33.9 2e-06 1.1 1.1 1 +SEQ22#26#65#+ 31.6 5.9e-06 1.1 1.1 1 +SEQ39#23#62#+ 26.1 8.3e-05 1.1 1.1 1 +SEQ48#24#64#+ 26.1 8.5e-05 1.1 1.1 1 +SEQ29#21#59#+ 24.3 0.0002 1.1 1.1 1 +SEQ32#26#73#+ 54.0 8.3e-10 1.2 1.2 2 +SEQ31#26#73#+ 53.2 1.2e-09 1.2 1.2 2 +SEQ9#26#73#+ 52.7 1.4e-09 1.2 1.2 2 +SEQ28#25#71#+ 51.1 2.8e-09 1.2 1.2 2 +SEQ11#26#82#+ 50.0 4.6e-09 1.2 1.2 2 +SEQ15#26#73#+ 49.2 6.6e-09 1.2 1.2 2 +SEQ19#27#82#+ 49.1 6.9e-09 1.2 1.2 2 +SEQ50#26#73#+ 48.8 7.8e-09 1.2 1.2 2 +SEQ17#25#71#+ 48.2 9.8e-09 1.2 1.2 2 +SEQ23#27#74#+ 47.1 1.6e-08 1.2 1.2 2 +SEQ12#26#82#+ 47.0 1.7e-08 1.2 1.2 2 +SEQ13#26#82#+ 46.5 2e-08 1.2 1.2 2 +SEQ36#26#73#+ 46.5 2.1e-08 1.2 1.2 2 +SEQ10#26#73#+ 45.6 3e-08 1.2 1.2 2 +SEQ18#26#72#+ 45.5 3.1e-08 1.2 1.2 2 +SEQ46#26#72#+ 45.5 3.2e-08 1.2 1.2 2 +SEQ21#27#74#+ 45.0 3.9e-08 1.2 1.2 2 +SEQ24#26#73#+ 45.0 4e-08 1.2 1.2 2 +SEQ4#26#73#+ 44.8 4.4e-08 1.2 1.2 2 +SEQ33#26#72#+ 42.6 1.1e-07 1.2 1.2 2 +SEQ45#25#72#+ 41.4 1.8e-07 1.2 1.2 2 +SEQ30#25#72#+ 41.2 2e-07 1.2 1.2 2 +SEQ20#25#72#+ 40.8 2.4e-07 1.2 1.2 2 +SEQ35#26#72#+ 40.7 2.5e-07 1.2 1.2 2 +SEQ16#25#72#+ 40.4 2.8e-07 1.2 1.2 2 +SEQ26#26#72#+ 39.4 4.4e-07 1.2 1.2 2 +SEQ5#26#72#+ 39.2 4.9e-07 1.2 1.2 2 +SEQ37#45#82#+ 32.4 9e-06 1.2 1.2 2 +SEQ40#21#66#+ 30.4 2.1e-05 1.2 1.2 2 +SEQ7#45#83#+ 26.7 0.00011 1.2 1.2 2 +SEQ43#27#71#+ 25.6 0.00017 1.2 1.2 2 +SEQ42#1#50#+ 45.6 2.6e-16 1.3 1.3 3 +SEQ38#1#50#+ 45.2 3.9e-16 1.3 1.3 3 +SEQ44#1#51#+ 43.7 1.7e-15 1.3 1.3 3 +SEQ6#1#51#+ 43.6 1.7e-15 1.3 1.3 3 +SEQ41#1#50#+ 40.6 3.3e-14 1.3 1.3 3 +SEQ8#1#48#+ 39.1 1.4e-13 1.3 1.3 3 +SEQ47#2#50#+ 38.0 4e-13 1.3 1.3 3 +SEQ48#1#52#+ 37.9 4.5e-13 1.3 1.3 3 +SEQ49#1#50#+ 35.7 3.9e-12 1.3 1.3 3 +SEQ43#1#52#+ 35.3 5.8e-12 1.3 1.3 3 +SEQ20#1#48#+ 29.7 1.3e-09 1.3 1.3 3 +SEQ15#1#49#+ 29.2 2.1e-09 1.3 1.3 3 +SEQ50#1#53#+ 29.0 2.5e-09 1.3 1.3 3 +SEQ39#1#50#+ 28.6 3.7e-09 1.3 1.3 3 +SEQ14#1#53#+ 27.9 7e-09 1.3 1.3 3 +SEQ4#1#53#+ 26.6 2.6e-08 1.3 1.3 3 +SEQ21#1#52#+ 24.0 3.2e-07 1.3 1.3 3 +SEQ10#1#53#+ 23.2 7.4e-07 1.3 1.3 3 +SEQ34#1#51#+ 22.2 1.9e-06 1.3 1.3 3 +SEQ74#1#50#+ 86.4 6.3e-48 1.4 1.4 4 +SEQ75#1#50#+ 83.9 1.3e-46 1.4 1.4 4 +SEQ72#1#50#+ 82.8 5.2e-46 1.4 1.4 4 +SEQ73#1#50#+ 79.7 2.1e-44 1.4 1.4 4 +SEQ84#1#50#+ 37.2 3.7e-21 1.5 1.5 5 +SEQ78#1#50#+ 36.0 3.2e-20 1.5 1.5 5 +SEQ87#1#49#+ 32.1 2.5e-17 1.5 1.5 5 +SEQ85#1#50#+ 31.3 1e-16 1.5 1.5 5 +SEQ86#1#50#+ 31.2 1.2e-16 1.5 1.5 5 +SEQ56#1#53#+ 30.0 9.3e-16 1.5 1.5 5 +SEQ58#1#50#+ 28.0 3.4e-14 1.5 1.5 5 +SEQ47#3#53#+ 27.2 1.3e-13 1.5 1.5 5 +SEQ82#1#51#+ 25.3 3.6e-12 1.5 1.5 5 +SEQ76#1#49#+ 24.4 1.5e-11 1.5 1.5 5 +SEQ79#1#50#+ 22.6 3.5e-10 1.5 1.5 5 |
| b |
| diff -r 4310ac018d05 -r 869a6e807d76 test-data/RESULTS/partitions/final_partition.used_cmsearch --- a/test-data/RESULTS/partitions/final_partition.used_cmsearch Sat Jan 21 17:39:21 2017 -0500 +++ b/test-data/RESULTS/partitions/final_partition.used_cmsearch Wed Feb 22 16:51:06 2017 -0500 |
| b |
| @@ -1,2 +1,5 @@ +1.3 1.2 1.1 +1.4 +1.5 |
